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read_align.html
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<html>
<head>
<title>
READ_ALIGN - Convert an alignment to PIR format
</title>
</head>
<body bgcolor="#EEEEEE" link="#CC0000" alink="#FF3300" vlink="#000055">
<h1 align = "center">
READ_ALIGN <br> Convert an alignment to PIR format
</h1>
<hr>
<p>
<b>READ_ALIGN</b>
is a FORTRAN90 program which
reads a file
containing information about a multiple sequence alignment, and
writes out the relevant information to another file using
the PIR format, by Des Higgins.
</p>
<p>
The reason for converting to the PIR format is to use
the <a href = "../../f_src/distances/distances.html">DISTANCES</a> program.
</p>
<h3 align = "center">
Languages:
</h3>
<p>
<b>READ_ALIGN</b> is available in
<a href = "../../f77_src/read_align/read_align.html">a FORTRAN77 version</a> and
<a href = "../../f_src/read_align/read_align.html">a FORTRAN90 version</a>.
</p>
<h3 align = "center">
Related Data and Programs:
</h3>
<p>
<a href = "../../f_src/distances/distances.html">
DISTANCES</a>,
a FORTRAN90 program which
can read a file in PIR format and create a distance matrix.
</p>
<p>
<a href = "../../f_src/spacer/spacer.html">
SPACER</a>,
a FORTRAN90 program which
can read a distance matrix and perform a principal component analysis.
</p>
<p>
<a href = "../../f_src/spacer_data_convert/spacer_data_convert.html">
SPACER_DATA_CONVERT</a>,
a FORTRAN90 program which
can read a multiple sequence alignment file and write out the
relevant information into a file in PIR format.
</p>
<h3 align = "center">
Author:
</h3>
<p>
Des Higgins,<br>
EMBL Data Library,<br>
April 1992.
</p>
<h3 align = "center">
Source Code:
</h3>
<p>
<ul>
<li>
<a href = "read_align.f90">read_align.f90</a>, the source code;
</li>
<li>
<a href = "read_align.sh">read_align.sh</a>,
commands to compile and load the source code;
</li>
</ul>
</p>
<h3 align = "center">
Examples and Tests:
</h3>
<p>
<ul>
<li>
<a href = "clustal.dat">clustal.dat</a>, a CLUSTAL alignment file;
</li>
<li>
<a href = "clustal.pir">clustal.pir</a>, the converted alignment file;
</li>
</ul>
</p>
<h3 align = "center">
List of Routines:
</h3>
<p>
<ul>
<li>
<b>READ_ALIGN</b> reads a multiple alignment file and rewrites it in PIR format.
</li>
<li>
<b>BLANK_LINE</b> looks for a "blank" line.
</li>
<li>
<b>TIMESTAMP</b> prints the current YMDHMS date as a time stamp.
</li>
</ul>
</p>
<p>
You can go up one level to <a href = "../f_src.html">
the FORTRAN90 source codes</a>.
</p>
<hr>
<i>
Last revised on 15 December 2007.
</i>
<!-- John Burkardt -->
</body>
</html>