NAMESPACE

importClassesFrom(Biobase, AnnotatedDataFrame, AssayData, data.frameOrNULL, MIAME, Versions, NChannelSet, eSet, VersionedBiobase, Versioned)
importMethodsFrom(Biobase, fData)
importFrom(Biobase, assayDataNew)
importFrom(cellHTS2, buildCellHTS2, convertWellCoordinates)
importClassesFrom(cellHTS2, cellHTS)
importMethodsFrom(cellHTS2, annotate, configure, geneAnno, "name<-", pdim, plate)
importFrom(hwriter, hwrite, hwriteImage)
importFrom(methods, getMethod, new, signature)
importMethodsFrom(vsn, predict)
importFrom(stats, cov, mad, mahalanobis, median, na.omit, quantile, sd, var)
importFrom(utils, browseURL, download.file, read.table, URLencode, write.table)

importFrom(e1071, svm, tune)
importFrom(EBImage, closing, colorMode,
           computeFeatures.basic, computeFeatures.haralick, computeFeatures.moment, computeFeatures.shape,
           dilate, distmap, drawCircle, erode,
           fillHull, filter2, getFrame, Grayscale, makeBrush, numberOfFrames,
           ocontour, opening, paintObjects,
           propagate, readImage, resize, rgbImage, rmObjects, tile, thresh,
           toRGB, translate, untile, watershed, writeImage)

exportClasses(imageHTS)

export(
       ## core
       parseImageConf,

       ## process well
       segmentWells, extractFeatures, readLearnTS, predictCellLabels, summarizeWells,

       ## HeLa cells
       segmentATH, getCellFtrsATH,

       ## Yeast BF
       segmentYeastBF, segmentRing, 
       
       ## inspect screen data
       installWebQuery, popWebQuery, installCellPicker, popCellPicker, makeCellHTS,

       ## access
       fileHTS, readHTS, parseDCF, collectCellFeatures, getWellFeatures,

       ## uname
       getUnames, prw2uname, uname2prw, rowcol2well, well2rowcol, well2wellid,

       ## misc
       zprime, highlightSegmentation, countObjects, getImageConf
)