samples.json

[
    {
        "specimen_id": "CPCT1",
        "patient_id":"CPCT1",
        "tissue": "other",
        "purity": 100,
        "read1":"~/workspace/dsl2/data/CPCT12345678R/CPCT1/CPCT12345678R_AHHKYHDSXX_S13_L001_R1_001.fastq.gz",
        "read2":"~/workspace/dsl2/data/CPCT12345678R/CPCT1/CPCT12345678R_AHHKYHDSXX_S13_L001_R2_001.fastq.gz"
    },
    {
        "specimen_id":"CPCT2",
        "patient_id":"CPCT2",
        "tissue": "other",
        "purity": 100,
        "read1":"~/workspace/dsl2/data/CPCT12345678R/CPCT2/CPCT12345678R_AHHKYHDSXX_S13_L002_R1_001.fastq.gz",
        "read2":"~/workspace/dsl2/data/CPCT12345678R/CPCT2/CPCT12345678R_AHHKYHDSXX_S13_L002_R2_001.fastq.gz"
    },
    {
        "specimen_id":"CPCT3",
        "patient_id":"CPCT3",
        "tissue": "other",
        "purity": 100,
        "read1":"~/workspace/dsl2/data/CPCT12345678R/CPCT3/CPCT12345678R_AHHKYHDSXX_S13_L003_R1_001.fastq.gz",
        "read2":"~/workspace/dsl2/data/CPCT12345678R/CPCT3/CPCT12345678R_AHHKYHDSXX_S13_L003_R2_001.fastq.gz"
    },
    {
        "specimen_id":"CPCT4",
        "patient_id":"CPCT4",
        "tissue": "other",
        "purity": 100,
        "read1":"~/workspace/dsl2/data/CPCT12345678R/CPCT4/CPCT12345678R_AHHKYHDSXX_S13_L004_R1_001.fastq.gz",
        "read2":"~/workspace/dsl2/data/CPCT12345678R/CPCT4/CPCT12345678R_AHHKYHDSXX_S13_L004_R2_001.fastq.gz"
    }
]