mnegri-ov198

This repository holds scripts and raw data used by the publication:

Paracchini L, Mannarino L, et al., Oncotarget (2016), in press.

and it is divided in several subdirectories:

config: Includes configuration data for bcbio-nextgen
data: Includes results (VCFs) and other data files

Data files

The data files included are as follows:

all_genes.bed: BED file containing all the regions used in the experiment
all_somatic_variants.vcf.gz: The complete file containing all the variants analyzed
all_somatic_variants.vcf.gz.tbi: tabix index for the above file
phylogeny_table.txt: Allelic fraction table used to generate the phylogenetic trees

See also

Additional data files were taken from https://github.com/lbeltrame/mnegri-ov170 as they were also part of the previous publication.