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visualize.R
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visualize.R
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## Here I visualize the results
theme_set(theme_bw(base_size = 14)) # set theme
dist_palette <- c("#FEE090", "#FDAE61", "#F46D43", "#D73027")
#### Distance of differences ####
# ------------------------------------------------------------------------------
## mean distance of differences
ggplot(results_mean_df,
aes(fit_dim, mean_distance_diff_proc, color = org_dim, group = org_dim)) +
geom_point() +
geom_line() +
scale_color_manual(values = dist_palette) +
labs(title = "Difference of Distances",
subtitle = "Euclidean distance between the true distances between
the nodes and the estimated distances",
x = "Fitted dimension",
y = "Mean Difference of Distances",
color = "Original \ndimension") +
facet_grid(nodes ~ distribution)
ggsave(file = "./Plots/Dod_mean.pdf", width = 210, height = 297, units = "mm")
ggsave(file = "./Plots/Dod_mean.png", width = 210, height = 280, units = "mm")
ggplot(results_mean_df,
aes(fit_dim, mean_distance_diff_proc_scaled, color = org_dim, group = org_dim)) +
geom_point() +
geom_line() +
scale_color_manual(values = dist_palette) +
labs(title = "Difference of Distances divided by the number of nodes",
subtitle = "Euclidean distance between the true distances between
the nodes and the estimated distances",
x = "Fitted dimension",
y = "Mean Difference of Distances",
color = "Original \ndimension") +
facet_grid(nodes ~ distribution)
ggsave(file = "./Plots/Dod_mean_free.pdf", width = 210, height = 297, units = "mm")
ggsave(file = "./Plots/Dod_mean_free.png", width = 210, height = 280, units = "mm")
## mean distance of differences (scaled)
ggplot(results_mean_df,
aes(fit_dim, mean_distance_diff_scale, color = org_dim, group = org_dim)) +
geom_point() +
geom_line() +
scale_color_manual(values = dist_palette) +
labs(title = "Difference of Distances",
subtitle = "Euclidean distance between the true distances between
the nodes and the estimated distances",
x = "Fitted dimension",
y = "Mean Difference of Distances",
color = "Original \ndimension") +
facet_grid(nodes ~ distribution)
ggsave(file = "./Plots/Dod_scaled.pdf", width = 210, height = 297, units = "mm")
ggsave(file = "./Plots/Dod_scaled.png", width = 210, height = 280, units = "mm")
ggplot(results_mean_df,
aes(fit_dim, mean_distance_diff_scale_scaled, color = org_dim, group = org_dim)) +
geom_point() +
geom_line() +
scale_color_manual(values = dist_palette) +
labs(title = "Difference of Distances divided by the number of nodes",
subtitle = "Euclidean distance between the true distances between
the nodes and the estimated distances",
x = "Fitted dimension",
y = "Mean Difference of Distances",
color = "Original \ndimension") +
facet_grid(nodes ~ distribution)
ggsave(file = "./Plots/Dod_scaled_free.pdf", width = 210, height = 297, units = "mm")
ggsave(file = "./Plots/Dod_scaled_free.png", width = 210, height = 280, units = "mm")
# sd difference of distances
ggplot(results_mean_df,
aes(fit_dim, sd_distance_diff_proc, color = org_dim, group = org_dim)) +
geom_point() +
geom_line() +
scale_color_manual(values = dist_palette) +
labs(title = "Variance of the Difference of Distances",
subtitle = "Euclidean distance between the true distances between
the nodes and the estimated distances",
x = "Fitted dimension",
y = "Standard deviation",
color = "Original \ndimension") +
facet_grid(nodes ~ distribution)
ggsave(file = "./Plots/Dod_sd.pdf", width = 210, height = 297, units = "mm")
ggsave(file = "./Plots/Dod_sd.png", width = 210, height = 280, units = "mm")
ggplot(results_mean_df,
aes(fit_dim, sd_distance_diff_proc_scaled, color = org_dim, group = org_dim)) +
geom_point() +
geom_line() +
scale_color_manual(values = dist_palette) +
labs(title = "Variance of the Difference of Distances divided by the number of nodes",
subtitle = "Euclidean distance between the true distances between
the nodes and the estimated distances",
x = "Fitted dimension",
y = "Standard deviation",
color = "Original \ndimension") +
facet_grid(nodes ~ distribution)
ggsave(file = "./Plots/Dod_sd_free.pdf", width = 210, height = 297, units = "mm")
ggsave(file = "./Plots/Dod_sd_free.png", width = 210, height = 280, units = "mm")
# ------------------------------------------------------------------------------