3_hybrid_predictions.yml

target_default: 3_hybrid_predictions

packages:
  - RcppCNPy
  - dplyr
  - feather
  - lubridate
  - readr

sources:
  - 3_hybrid_predictions/src/npy_prediction.R

targets:
  3_hybrid_predictions:
    depends:
     - 3_hybrid_predictions/out/compare_predictions_obs.rds.ind


  # combine the prediction from 4 models: ANN (plain neural network),
  # RNN (+ time), RGCN (+ space), RGCN_ptrn (+ pretraining) with observed data.

  3_hybrid_predictions/out/compare_predictions_obs_d100.rds.ind:
    command: combine_models_obs(
      obs_ind = '2_observations/out/obs_temp_drb.rds.ind',
      ann_ind = '3_hybrid_predictions/in/ANN_0831.npy.ind',
      rnn_ind = '3_hybrid_predictions/in/RNN_0518.npy.ind',
      rnn_ptr_ind = '3_hybrid_predictions/in/PGRNN_0716.npy.ind',
      rgcn_ind = '3_hybrid_predictions/in/RGCN_0518_woptr.npy.ind',
      rgcn_ptrn_ind = '3_hybrid_predictions/in/RGCN_0518.npy.ind',
      rgcn_ptrn_ctr_ind = '3_hybrid_predictions/in/RGCN_0518_wctr.npy.ind',
      out_ind = target_name)


  3_hybrid_predictions/out/compare_predictions_obs_d001.rds.ind:
    command: combine_models_obs(
      obs_ind = '2_observations/out/obs_temp_drb.rds.ind',
      ann_ind = '3_hybrid_predictions/in/ANN_0507_d001.npy.ind',
      rnn_ind = '3_hybrid_predictions/in/RNN_0507_d001.npy.ind',
      rnn_ptr_ind = '3_hybrid_predictions/in/PGRNN_0507_d001.npy.ind',
      rgcn_ind = '3_hybrid_predictions/in/RGCN_woptr_0507_d001.npy.ind',
      rgcn_ptrn_ind = '3_hybrid_predictions/in/RGCN_0507_d001.npy.ind',
      rgcn_ptrn_ctr_ind = '3_hybrid_predictions/in/RGCN_0507_wctr_d001.npy.ind',
      out_ind = target_name)

  3_hybrid_predictions/out/compare_predictions_obs_d02.rds.ind:
    command: combine_models_obs(
      obs_ind = '2_observations/out/obs_temp_drb.rds.ind',
      ann_ind = '3_hybrid_predictions/in/ANN_0507_d02.npy.ind',
      rnn_ind = '3_hybrid_predictions/in/RNN_0507_d02.npy.ind',
      rnn_ptr_ind = '3_hybrid_predictions/in/PGRNN_0507_d02.npy.ind',
      rgcn_ind = '3_hybrid_predictions/in/RGCN_woptr_0507_d02.npy.ind',
      rgcn_ptrn_ind = '3_hybrid_predictions/in/RGCN_0507_d02.npy.ind',
      rgcn_ptrn_ctr_ind = '3_hybrid_predictions/in/RGCN_0507_wctr_d02.npy.ind',
      out_ind = target_name)

  3_hybrid_predictions/out/compare_predictions_obs.rds.ind:
    command: combine_experiments(
      d100_ind = '3_hybrid_predictions/out/compare_predictions_obs_d100.rds.ind',
      d02_ind = '3_hybrid_predictions/out/compare_predictions_obs_d02.rds.ind',
      d001_ind = '3_hybrid_predictions/out/compare_predictions_obs_d001.rds.ind',
      out_ind = target_name)