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4_summarize_data.yml
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4_summarize_data.yml
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target_default: 4_summarize_data
packages:
- dplyr
- pah
- ggplot2
- httr
- sf
- USAboundaries
- RColorBrewer
include:
- 3_filter_data.yml
sources:
- 4_summarize_data/src/summarize_data.R
- 4_summarize_data/src/map_thresholds.R
- 4_summarize_data/src/plot_pah_alt.R
targets:
4_summarize_data:
depends:
- 4_summarize_data/doc/conc_by_watershed.png
- 4_summarize_data/doc/conc_by_watershed.pdf
- threshold_dat
- 4_summarize_data/doc/map_thresholds.png
- 4_summarize_data/doc/map_thresholds.pdf
4_summarize_data/doc/conc_by_watershed.png:
command: conc_by_site(sample_dat = samples, fig_file_path = target_name)
4_summarize_data/doc/conc_by_watershed.pdf:
command: conc_by_site(sample_dat = samples, fig_file_path = target_name)
threshold_dat:
command: calc_tox_thresholds(compound_info = samples, sample_column = I('unique_id'), conc_column = I('RESULT'), compound_column = I('PARAM_SYNONYM'), conc_unit = I('ppb'))
4_summarize_data/doc/map_thresholds.png:
command: make_map(filename = target_name, sample_info = samples, thresh_dat = threshold_dat)
4_summarize_data/doc/map_thresholds.pdf:
command: make_map(filename = target_name, sample_info = samples, thresh_dat = threshold_dat)