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terminate called after throwing an instance of 'std::bad_alloc' #68

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B-1991-ing opened this issue Jul 7, 2022 · 1 comment
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@B-1991-ing
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Dear IDBAUD support team,

What does it mean that "terminate called after throwing an instance of 'std::bad_alloc'"?

My error file:
IDBA_UD_lake_backup.err.txt

My shell script:
/services/tools/idba/1.1.1/bin/idba_ud --pre_correction --num_threads 40 --min_count 3 --mink 40 --maxk 100 --min_contig 1000 -r ${lake_backup_fa} -o ${IDBA_UD_out}

I have a 701GB merged .fa file. But, my CPU cores' limitation is 40 and memory limitation is 1500gb.

Is it due to I have a very big .fa file to be assembled?

Best,

Bing

@TianzeS
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TianzeS commented Mar 23, 2024

Hi Bing,
I have met the same problem. Have you figure out what is the cause of this problem?

Best,
Tianze

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