SYNOPSIS

sn_mlst

Runs 7-gene MLST on each sample

Software requirements

Torsten mlst

Algorithm

For each genome assembly, runs mlst and reports an individual file in each sample subdirectory.

Outputs

Table with columns

sample
mlst_scheme
7-gene_ST
locus1
locus2
locus3
locus4
locus5
locus6
locus7