v0.33

Fixed distance matrix bug

v0.32

• The mashtree executable is now mashtree instead of mashtree.pl
• Quicktree is now required
• Increased precision of distances between genomes
• added mashtree module to testing environment
• Fixed some warnings related to the minimum abundance finder
• Fixed the findDistances bug by updating the SQL queries

Mashtree v0.29

• better documentation on cpan (?)
• mashtree instead of mashtree.pl
  • I'll have a deprecation message for several versions, until we are comfortable removing mashtree.pl
• treeDist() method to describe a distance between two trees

v0.28

• Updated the unit tests so that they work with QuickTree too.
• Created a tree distance metric to help with the unit tests.

0.27

Same as 0.27a except I remembered to add the correct version number. Sorry for the confusion.

0.27a

• SQLite woes are probably fixed. No longer are we capped at 1000 genomes. Thank you @fbristow for the pull request. Thanks to everyone else for bringing it to my attention.
• Added test to make sure the database is working properly (t/10_sqlite.t)
• QuickTree is now an option. If it is in your PATH then it will use QuickTree which produces the same tree but faster.

v0.26

For the minimum abundance filter (--min-depth 0), using Mash for generating a histogram. Thanks for the tip @boydgreenfield.

v0.25

Some metadata for CPAN was fixed.

Chunking insert statements so as to not overload sqlite. See issue #11 .

v0.23

More minor fixes

v0.22

This version isn't a huge update. Just minor changes.

• Cleaning up intermediate files better
• Native reading of fastq.gz files into Mash. Hopefully that speeds things up a bit.