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BA.2.12.1 Lineage Request #9

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m-crown opened this issue Jun 13, 2022 · 1 comment
Open

BA.2.12.1 Lineage Request #9

m-crown opened this issue Jun 13, 2022 · 1 comment
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vcf request Request for lineage VCF file

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@m-crown
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m-crown commented Jun 13, 2022

This lineage is described at cov-lineages/pango-designation#499 and CoVariants

@m-crown
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m-crown commented Jun 13, 2022

BA.2.12.1

nt product AA source
T670G NSP1 S135R
C2790T NSP3 T24I
G4184A NSP3 G489S
C9344T NSP4 L264F
C9534T NSP4 T327I
C9866T NSP4 L438F
C10029T NSP4 T492I
C10449A NSP5 P132H
11288-11296del NSP6 S106del, G107del, F108del
C14408T NSP12 P323L
C17410T NSP13 R392C
A18163G NSP14 I42V
C19955T NSP15 T112I
C21618T Surface Glycoprotein T19I
21633_21641del Surface Glycoprotein L24S, P25del, P26del, A27del
G21987A Surface Glycoprotein G142D
T22200G Surface Glycoprotein V213G
G22578A Surface Glycoprotein G339D
C22674T Surface Glycoprotein S371F
T22679C Surface Glycoprotein S373P
C22686T Surface Glycoprotein S375F
A22688G Surface Glycoprotein T376A
G22775A Surface Glycoprotein D405N
A22786C Surface Glycoprotein R408S
G22813T Surface Glycoprotein K417N
T22882G Surface Glycoprotein N440K
T22917A Surface Glycoprotein L452Q
G22992A Surface Glycoprotein S477N
C22995A Surface Glycoprotein T478K
A23013C Surface Glycoprotein E484A
A23040G Surface Glycoprotein Q493R
A23055G Surface Glycoprotein Q498R
A23063T Surface Glycoprotein N501Y
T23075C Surface Glycoprotein Y505H
A23403G Surface Glycoprotein D614G
C23525T Surface Glycoprotein H655Y
T23599G Surface Glycoprotein N679K
C23604A Surface Glycoprotein P681H
C23673T Surface Glycoprotein S704L
C23854A Surface Glycoprotein N764K
G23948T Surface Glycoprotein D796Y
A24424T Surface Glycoprotein Q954H
T24469A Surface Glycoprotein N969K
C26060T ORF3a T223I
C26270T E T9I
C26577G M Q19E
G26709A M A63T
G27382C, A27383T, T27384C ORF6 D61L
C28311T N P13L
28362_28370del N E31del, R32del, S33del
G28881A, G28882A, G28883C N R203K, G204R
A29510C N S413R

Synonymous SNPs (CoVariants)
C241T
C3037T
C4321T
A9424G
C10198T
G10447A
C11674T
C12880T
T15009C
C15714T
A20055G
C21721T
C25000T
C25416T
C25584T
C26858T
A27259C
C27807T
A28271T

@m-crown m-crown self-assigned this Jun 15, 2022
@m-crown m-crown added the vcf request Request for lineage VCF file label Jun 15, 2022
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