NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(colnames,SCE)
S3method(dim,SCE)
S3method(rownames,SCE)
export(Alpha)
export(assign_clusters)
export(barcode_rank_plot)
export(call_targets)
export(clusters)
export(convert_to_seurat)
export(create_SCE)
export(de_ttest)
export(de_ttest_all)
export(debris_genes)
export(droplet_data)
export(estimate_dbr_score)
export(filter_genes)
export(fraction_log)
export(gene_data)
export(get_clean_ids)
export(get_gene_pct)
export(get_pcs)
export(get_removed_ids)
export(get_var_genes)
export(init)
export(normalize_data)
export(plot_clust)
export(plot_data)
export(plot_dbr_score)
export(plot_umi_gene)
export(raw_counts)
export(read_10x)
export(run_em)
export(set_debris_test_set)
export(sum_log)
export(summarize_clusters)
export(top_genes)
exportClasses(SCE)
import(Rcpp)
import(ggplot2)
importClassesFrom(Matrix,dgCMatrix)
importFrom(Matrix,Diagonal)
importFrom(Matrix,Matrix)
importFrom(Matrix,colSums)
importFrom(Matrix,readMM)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,t)
importFrom(irlba,prcomp_irlba)
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,setClassUnion)
importFrom(methods,setOldClass)
importFrom(scales,comma)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,loess)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,pt)
importFrom(utils,globalVariables)
importFrom(utils,read.delim)
useDynLib(diem)