diff --git a/ports/itk/portfile.cmake b/ports/itk/portfile.cmake
index 5e370771275efa..57bf5a92cc9c0b 100644
--- a/ports/itk/portfile.cmake
+++ b/ports/itk/portfile.cmake
@@ -54,6 +54,8 @@ vcpkg_check_features(OUT_FEATURE_OPTIONS FEATURE_OPTIONS
         "cuda"         RTK_USE_CUDA
         #"cuda"         CUDA_HAVE_GPU   # Automatically set by FindCUDA?
         "cufftw"       ITK_USE_CUFFTW
+        "fftw"         ITK_USE_FFTWD
+        "fftw"         ITK_USE_FFTWF
         "opencl"       ITK_USE_GPU
         "tbb"          Module_ITKTBB
         "rtk"          Module_RTK
diff --git a/ports/itk/vcpkg.json b/ports/itk/vcpkg.json
index 5c449650ae6968..d5aadaaed0ecdb 100644
--- a/ports/itk/vcpkg.json
+++ b/ports/itk/vcpkg.json
@@ -9,10 +9,6 @@
     "double-conversion",
     "eigen3",
     "expat",
-    {
-      "name": "fftw3",
-      "default-features": false
-    },
     "gdcm",
     {
       "name": "hdf5",
@@ -62,6 +58,12 @@
         "cuda"
       ]
     },
+    "fftw": {
+      "description": "Enable the FFTW backend",
+      "dependencies": [
+        "fftw3"
+      ]
+    },
     "opencl": {
       "description": "Use OpenCL",
       "dependencies": [
diff --git a/scripts/test_ports/vcpkg-ci-itk/vcpkg.json b/scripts/test_ports/vcpkg-ci-itk/vcpkg.json
index d76f0660bc4e83..8f752ff0b7adbd 100644
--- a/scripts/test_ports/vcpkg-ci-itk/vcpkg.json
+++ b/scripts/test_ports/vcpkg-ci-itk/vcpkg.json
@@ -8,6 +8,7 @@
     {
       "name": "itk",
       "features": [
+        "fftw",
         "opencl",
         "opencv",
         "rtk",
diff --git a/versions/i-/itk.json b/versions/i-/itk.json
index 24228afa0c1a4b..f673b7111de5d6 100644
--- a/versions/i-/itk.json
+++ b/versions/i-/itk.json
@@ -1,7 +1,7 @@
 {
   "versions": [
     {
-      "git-tree": "bd1f27445fa5cca6a83d2a0879d860429c406b6d",
+      "git-tree": "0eb38ceb9c48563ee85896790bcb807cdba766e4",
       "version": "5.4.0",
       "port-version": 1
     },