Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[FEATURE] Extend the files supported for ingestion #930

Open
sarthakpati opened this issue Sep 9, 2024 · 1 comment
Open

[FEATURE] Extend the files supported for ingestion #930

sarthakpati opened this issue Sep 9, 2024 · 1 comment
Labels
enhancement New feature or request

Comments

@sarthakpati
Copy link
Collaborator

sarthakpati commented Sep 9, 2024

Is your feature request related to a problem? Please describe.

The following new file types need to be supported:

  1. Radiology: 3D DICOM tomosynthesis to standards-compliant NIfTI images (as a likely extension to the GaNDLF's anonymization submodule): example images, example code (this is a private repo - request access)
  2. Histology:
    a. Philips isyntax: example image, example code 1, 2
    b. DICOM: example image (download using this script), example code
    c. DSA annotations to PNG: take annotations generated using DSA along with the input WSI, and save the associated image patches and annotations; example data, example code (both need authorization)

Describe the solution you'd like

This will probably needs to be done over multiple PRs.

Describe alternatives you've considered

N.A.

Additional context

N.A.

@sarthakpati sarthakpati added the enhancement New feature or request label Sep 9, 2024
@sarthakpati
Copy link
Collaborator Author

#959 takes care of 2 a and b

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

1 participant