Skip to content
This repository has been archived by the owner on Jan 13, 2022. It is now read-only.

Latest commit

 

History

History
39 lines (30 loc) · 1.35 KB

RELEASES.md

File metadata and controls

39 lines (30 loc) · 1.35 KB
Raw

Flappie

Flappie is a prototype basecaller for the sequence platforms produced by Oxford Nanopore Technologies.

2.1.3 (Pelotretis flavilatus)

New Flip-flop model for direct RNA

  • Accuracy improvement, typically +1.5% over Guppy Hac v3.5.1

2.1.2 (Pleuronichthys decurrens)

Further improvements to Flip-flop and RLE models

  • Accuracy improvement, typically +1.5% over Guppy Hac v3.4
  • Performance reduced

2.1.1 (Solea solea)

Improved Flip-flop and RLE models

  • Accuracy improvements, typically > +1%
  • Performance improvements, approximately 2x faster

2.1.0 (Lepidopsetta bilineata)

Runnie(r), improved Run-Length Encoding.

  • Improved RLE model
  • Shift-invariant formulation; input reads nolonger need to be scaled
  • Shape and scale parameters for run-distributions now decimal-encoded floats

2.0.0 (Psettichthys melanostictus)

Runnie, Run-Length Encoded basecaller

1.1.0 (Isopsetta isolepis)

Previous release of 5mC had incorrect model - please upgrade

  • Simple trace viewer with support for modified bases
  • Correct implementation of 5mC calling

1.0.0 (Microstomus kitt)

Public release of Flappie under the terms of the Oxford Nanopore Technologies Ltd. Public Licence v1.0.

0.1.0 (Parophrys vetulus)

Initial release of Flappie

  • Flip-flop basecalling of Fast5
  • Calling of 5mC as a separate base in CpG contexts