Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Segmentation fault when providing --time #14

Closed
unode opened this issue May 22, 2018 · 1 comment
Closed

Segmentation fault when providing --time #14

unode opened this issue May 22, 2018 · 1 comment

Comments

@unode
Copy link

unode commented May 22, 2018

Got one more segmentation fault when specifying --time 1:00:00 for 1 hour.
Seems to be just an alias problem since -t 1:00:00 works.

...
d #e494 [     0.03]  * # Native specification: --cpus-per-task=2 --nodes=1 --mem-per-cpu=50 --partition=htc --time 1:00:00 --tmp=100
t #e494 [     0.03] -> slurmdrmaa_parse_native
t #e494 [     0.03] -> slurmdrmaa_parse_additional_attr
d #e494 [     0.03]  * # cpus_per_task = 2
t #e494 [     0.03] <- slurmdrmaa_parse_additional_attr
t #e494 [     0.03] -> slurmdrmaa_parse_additional_attr
d #e494 [     0.03]  * nodes: 1 ->
d #e494 [     0.03]  * # min_nodes = 1
t #e494 [     0.03] <- slurmdrmaa_parse_additional_attr
t #e494 [     0.03] -> slurmdrmaa_parse_additional_attr
d #e494 [     0.03]  * # pn_min_memory (MEM_PER_CPU) = 50
t #e494 [     0.03] <- slurmdrmaa_parse_additional_attr
t #e494 [     0.03] -> slurmdrmaa_parse_additional_attr
d #e494 [     0.03]  * # partition = htc
t #e494 [     0.03] <- slurmdrmaa_parse_additional_attr
t #e494 [     0.03] -> slurmdrmaa_parse_additional_attr
d #e494 [     0.03]  * # time_limit = (null)
t #e494 [     0.03] -> slurmdrmaa_datetime_parse((null))

Program received signal SIGSEGV, Segmentation fault.
0x00007ffff6b20faf in __strlen_sse42 () from /lib64/libc.so.6
(gdb) bt
#0  0x00007ffff6b20faf in __strlen_sse42 () from /lib64/libc.so.6
#1  0x00007fffed955284 in slurmdrmaa_datetime_parse (string=0x0) at util.c:53
#2  0x00007fffed956295 in slurmdrmaa_add_attribute (job_desc=0x7fffffff9e10, attr=19, value=0x0) at util.c:292
#3  0x00007fffed956c19 in slurmdrmaa_parse_additional_attr (job_desc=0x7fffffff9e10, add_attr=0x7ac3bf "time", clusters_opt=0x7fffffff8af0) at util.c:427
#4  0x00007fffed9570f8 in slurmdrmaa_parse_native (job_desc=0x7fffffff9e10, value=0x79f8b0 "--cpus-per-task=2 --nodes=1 --mem-per-cpu=50 --partition=htc --time 1:00:00 --tmp=100") at util.c:502
#5  0x00007fffed95462e in slurmdrmaa_job_create (session=0x641ad0, jt=0x7e3570, envp=0x7fffffffa0f8, expand=0x771280, job_desc=0x7fffffff9e10) at job.c:701
#6  0x00007fffed952d3b in slurmdrmaa_job_create_req (session=0x641ad0, jt=0x7e3570, envp=0x7fffffffa0f8, job_desc=0x7fffffff9e10) at job.c:302
#7  0x00007fffed954af4 in slurmdrmaa_session_run_bulk (self=0x641ad0, jt=0x7e3570, start=1, end=2, incr=1) at session.c:126
#8  0x00007fffed96facb in drmaa_run_bulk_jobs (job_ids=0x7fffeea84a28, jt=0x7e3570, start=1, end=2, incr=1, error_diagnosis=0x732960 "", error_diag_len=1024) at drmaa_base.c:427
#9  0x00007fffeffed550 in ffi_call_unix64 () at /home/ilan/minonda/conda-bld/python_1494526091235/work/Python-3.6.1/Modules/_ctypes/libffi/src/x86/unix64.S:76
#10 0x00007fffeffeccf5 in ffi_call (cif=<optimized out>, fn=0x7fffed96f8e3 <drmaa_run_bulk_jobs>, rvalue=<optimized out>, avalue=0x7fffffffa330) at /home/ilan/minonda/conda-bld/python_1494526091235/work/Python-3.6.1/Modules/_ctypes/libffi/src/x86/ffi64.c:525
#11 0x00007fffeffe483c in _call_function_pointer (argcount=7, resmem=0x7fffffffa380, restype=<optimized out>, atypes=<optimized out>, avalues=0x7fffffffa330, pProc=0x7fffed96f8e3 <drmaa_run_bulk_jobs>, flags=4353)
    at /home/ilan/minonda/conda-bld/python_1494526091235/work/Python-3.6.1/Modules/_ctypes/callproc.c:809
#12 _ctypes_callproc (pProc=0x7fffed96f8e3 <drmaa_run_bulk_jobs>, argtuple=0x7fffffffa4f0, flags=4353, argtypes=<optimized out>, restype=0x7ffff0236158, checker=0x0) at /home/ilan/minonda/conda-bld/python_1494526091235/work/Python-3.6.1/Modules/_ctypes/callproc.c:1147
#13 0x00007fffeffdcda3 in PyCFuncPtr_call (self=<optimized out>, inargs=<optimized out>, kwds=0x0) at /home/ilan/minonda/conda-bld/python_1494526091235/work/Python-3.6.1/Modules/_ctypes/_ctypes.c:3870
#14 0x00007ffff793fe96 in PyObject_Call (func=0x7fffeea66e58, args=<optimized out>, kwargs=<optimized out>) at Objects/abstract.c:2246
#15 0x00007ffff7a20236 in do_call_core (kwdict=0x0, callargs=<optimized out>, func=0x7fffeea66e58) at Python/ceval.c:5067
#16 _PyEval_EvalFrameDefault (f=<optimized out>, throwflag=<optimized out>) at Python/ceval.c:3366
#17 0x00007ffff7a1aa60 in _PyEval_EvalCodeWithName (_co=0x7ffff0220390, globals=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=6, kwnames=0x0, kwargs=0x7e61c8, kwcount=0, kwstep=1, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0,
    name=0x7ffff7f66308, qualname=0x7ffff7f66308) at Python/ceval.c:4128
#18 0x00007ffff7a1c48a in fast_function (kwnames=<optimized out>, nargs=6, stack=<optimized out>, func=0x7fffeea7f840) at Python/ceval.c:4939
#19 call_function (pp_stack=0x7fffffffaa08, oparg=<optimized out>, kwnames=<optimized out>) at Python/ceval.c:4819
#20 0x00007ffff7a1f15d in _PyEval_EvalFrameDefault (f=<optimized out>, throwflag=<optimized out>) at Python/ceval.c:3284
#21 0x00007ffff7969e33 in gen_send_ex (gen=0x7fffefd92200, arg=<optimized out>, exc=<optimized out>, closing=<optimized out>) at Objects/genobject.c:189
#22 0x00007ffff7978f16 in listextend (self=0x7fffeea8ee88, b=<optimized out>) at Objects/listobject.c:857
#23 0x00007ffff7979398 in list_init (self=0x7fffeea8ee88, args=<optimized out>, kw=<optimized out>) at Objects/listobject.c:2316
#24 0x00007ffff79add4c in type_call (type=<optimized out>, args=0x7ffff7e8e908, kwds=0x0) at Objects/typeobject.c:915
#25 0x00007ffff793fade in _PyObject_FastCallDict (func=0x7ffff7d5bb40 <PyList_Type>, args=<optimized out>, nargs=<optimized out>, kwargs=0x0) at Objects/abstract.c:2316
#26 0x00007ffff7a1c2bb in call_function (pp_stack=0x7fffffffad48, oparg=<optimized out>, kwnames=0x0) at Python/ceval.c:4822
#27 0x00007ffff7a1f15d in _PyEval_EvalFrameDefault (f=<optimized out>, throwflag=<optimized out>) at Python/ceval.c:3284
#28 0x00007ffff7a1aa60 in _PyEval_EvalCodeWithName (_co=0x7ffff01ff420, globals=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=1, kwnames=0x7ffff7e9cb58, kwargs=0x7ffff7f8fba8, kwcount=3, kwstep=1, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0,
    name=0x7ffff7ea3d70, qualname=0x7fffefd8f300) at Python/ceval.c:4128
#29 0x00007ffff7a1c48a in fast_function (kwnames=<optimized out>, nargs=1, stack=<optimized out>, func=0x7fffeea84400) at Python/ceval.c:4939
#30 call_function (pp_stack=0x7fffffffafe8, oparg=<optimized out>, kwnames=<optimized out>) at Python/ceval.c:4819
#31 0x00007ffff7a1e8dd in _PyEval_EvalFrameDefault (f=<optimized out>, throwflag=<optimized out>) at Python/ceval.c:3300
#32 0x00007ffff7a1aa60 in _PyEval_EvalCodeWithName (_co=0x7ffff7f1c930, globals=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=0, kwnames=0x0, kwargs=0x8, kwcount=0, kwstep=2, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0, name=0x0, qualname=0x0)
    at Python/ceval.c:4128
#33 0x00007ffff7a1aee3 in PyEval_EvalCodeEx (_co=<optimized out>, globals=<optimized out>, locals=<optimized out>, args=<optimized out>, argcount=<optimized out>, kws=<optimized out>, kwcount=0, defs=0x0, defcount=0, kwdefs=0x0, closure=0x0) at Python/ceval.c:4149
#34 0x00007ffff7a1af2b in PyEval_EvalCode (co=<optimized out>, globals=<optimized out>, locals=<optimized out>) at Python/ceval.c:695
#35 0x00007ffff7a4d6c0 in run_mod (arena=0x7ffff7f79180, flags=0x7fffffffb340, locals=0x7ffff7f5df30, globals=0x7ffff7f5df30, filename=0x7ffff7ea3970, mod=0x6857d8) at Python/pythonrun.c:980
#36 PyRun_FileExFlags (fp=0x6438d0, filename_str=<optimized out>, start=<optimized out>, globals=0x7ffff7f5df30, locals=0x7ffff7f5df30, closeit=<optimized out>, flags=0x7fffffffb340) at Python/pythonrun.c:933
#37 0x00007ffff7a4ec83 in PyRun_SimpleFileExFlags (fp=0x6438d0, filename=<optimized out>, closeit=1, flags=0x7fffffffb340) at Python/pythonrun.c:396
#38 0x00007ffff7a6a0b5 in run_file (p_cf=0x7fffffffb340, filename=0x603310 L"test_drmaa.py", fp=0x6438d0) at Modules/main.c:338
#39 Py_Main (argc=<optimized out>, argv=<optimized out>) at Modules/main.c:810
#40 0x0000000000400c1d in main (argc=2, argv=<optimized out>) at ./Programs/python.c:69
@natefoo
Copy link
Owner

natefoo commented Nov 13, 2018

The = is required for long options that take a value (there can't be a space between the option and value). However, it will no longer segfault in this case.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants