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test_dna.expected
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test_dna.expected
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Protein identifier Contig id Start Stop Strand Gene symbol Sequence name Scope Element type Element subtype Class Subclass Method Target length Reference sequence length % Coverage of reference sequence % Identity to reference sequence Alignment length Accession of closest sequence Name of closest sequence HMM id HMM description Hierarchy node
NA contig01 1 984 + blaTEMp_G162T Escherichia amoxicillin-clavulanic acid/piperacillin-tazobactam/ticarcillin-clavulanic acid resistant blaTEM core AMR POINT BETA-LACTAM AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID POINTN 984 1176 83.67 99.80 984 NZ_CP095603.1:148777-149952 blaTEM promoter region NA NA NA
NA contig01 101 958 + blaTEM-156 class A beta-lactamase TEM-156 core AMR AMR BETA-LACTAM BETA-LACTAM ALLELEX 286 286 100.00 100.00 286 WP_061158039.1 class A beta-lactamase TEM-156 NA NA blaTEM-156
NA contig02 1 1191 + blaPDC PDC family class C beta-lactamase core AMR AMR BETA-LACTAM CEPHALOSPORIN BLASTX 397 397 100.00 99.75 397 WP_061189306.1 class C beta-lactamase PDC-114 NA NA blaPDC
NA contig03 101 802 + blaOXA OXA-48 family class D beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIALX 234 265 88.30 100.00 234 WP_058842180.1 OXA-48 family carbapenem-hydrolyzing class D beta-lactamase OXA-436 NA NA blaOXA-48_fam
NA contig04 101 1147 + vanG D-alanine--D-serine ligase VanG core AMR AMR GLYCOPEPTIDE VANCOMYCIN EXACTX 349 349 100.00 100.00 349 WP_063856695.1 D-alanine--D-serine ligase VanG NA NA vanG
NA contig04 1261 2391 + blaEC BlaEC family class C beta-lactamase plus AMR AMR BETA-LACTAM BETA-LACTAM BLASTX 377 377 100.00 98.14 377 WP_063610930.1 extended-spectrum class C beta-lactamase EC-15 NA NA blaEC
NA contig08 1 700 + blaTEMp_G162T Escherichia amoxicillin-clavulanic acid/piperacillin-tazobactam/ticarcillin-clavulanic acid resistant blaTEM core AMR POINT BETA-LACTAM AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID POINTN 700 1176 59.52 99.71 700 NZ_CP095603.1:148777-149952 blaTEM promoter region NA NA NA
NA contig08 101 700 + blaTEM TEM family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM PARTIAL_CONTIG_ENDX 200 286 69.93 100.00 200 WP_061158039.1 class A beta-lactamase TEM-156 NA NA blaTEM
NA contig09 1 651 - aph(3'')-Ib aminoglycoside O-phosphotransferase APH(3'')-Ib core AMR AMR AMINOGLYCOSIDE STREPTOMYCIN PARTIAL_CONTIG_ENDX 217 267 81.27 100.00 217 WP_001082319.1 aminoglycoside O-phosphotransferase APH(3'')-Ib NA NA aph(3'')-Ib
NA contig09 715 1377 - sul2 sulfonamide-resistant dihydropteroate synthase Sul2 core AMR AMR SULFONAMIDE SULFONAMIDE PARTIAL_CONTIG_ENDX 221 271 81.55 100.00 221 WP_001043265.1 sulfonamide-resistant dihydropteroate synthase Sul2 NA NA sul2
NA contig10 486 1307 + blaOXA OXA-9 family oxacillin-hydrolyzing class D beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM INTERNAL_STOP 274 274 100.00 99.64 274 WP_000722315.1 oxacillin-hydrolyzing class D beta-lactamase OXA-9 NA NA blaOXA-9_fam
NA contig11 1 984 + blaTEMp_G162T Escherichia amoxicillin-clavulanic acid/piperacillin-tazobactam/ticarcillin-clavulanic acid resistant blaTEM core AMR POINT BETA-LACTAM AMOXICILLIN-CLAVULANIC_ACID/PIPERACILLIN-TAZOBACTAM/TICARCILLIN-CLAVULANIC_ACID POINTN 984 1176 83.67 96.04 984 NZ_CP095603.1:148777-149952 blaTEM promoter region NA NA NA
NA contig11 101 958 + blaTEM TEM family class A beta-lactamase core AMR AMR BETA-LACTAM BETA-LACTAM INTERNAL_STOP 286 286 100.00 93.01 286 WP_061158039.1 class A beta-lactamase TEM-156 NA NA blaTEM
NA contig12 71 634 + qacR multidrug-binding transcriptional regulator QacR plus STRESS BIOCIDE QUATERNARY AMMONIUM QUATERNARY AMMONIUM BLASTX 188 188 100.00 99.47 188 ADK23698.1 multidrug-binding transcriptional regulator QacR NA NA qacR
NA contig13 1 1137 + emrD3 multidrug efflux MFS transporter EmrD-3 plus AMR AMR EFFLUX EFFLUX EXACTX 379 379 100.00 100.00 379 ABQ18953.1 multidrug efflux MFS transporter EmrD-3 NA NA emrD3
NA contig14 1 1089 + pmrB_C84R Escherichia colistin resistant PmrB core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA pmrB
NA contig14 1093 2181 + pmrB_C84R Escherichia colistin resistant PmrB core AMR POINT COLISTIN COLISTIN POINTX 363 363 100.00 99.72 363 WP_001300761.1 two-component system sensor histidine kinase PmrB NA NA pmrB
NA contig15 1 2905 + 23S_A2058T Escherichia azithromycin/erythromycin/telithromycin resistant 23S core AMR POINT MACROLIDE AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN POINTN 2905 2905 100.00 99.97 2905 NC_004431.1:237160-240064 23S ribosomal RNA NA NA NA
NA contig16 1 720 + nfsA_K141STOP Escherichia nitrofurantoin resistant NfsA core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA nfsA
NA contig16 1 720 + nfsA_R15C Escherichia nitrofurantoin resistant NfsA core AMR POINT NITROFURAN NITROFURANTOIN POINTX 240 240 100.00 99.17 240 WP_089631889.1 nitroreductase NfsA NA NA nfsA
NA contig17 1 247 + ampC_T-14TGT Escherichia cephalosporin resistant ampC core AMR POINT BETA-LACTAM CEPHALOSPORIN POINTN 247 245 100.00 99.19 247 NZ_CP041538.1:1149245-1149489 ampC/blaEC promoter region NA NA NA