From e348c4bf18b93e020efffb815ee5f13924a509b7 Mon Sep 17 00:00:00 2001 From: mdorf Date: Mon, 14 Oct 2024 22:02:28 -0700 Subject: [PATCH] implemented the multilingual prefLabels --- Gemfile.lock | 26 +- .../operations/submission_rdf_generator.rb | 277 +- lib/ontologies_linked_data/utils/triples.rb | 11 +- test/data/ontology_files/d3o.owl | 7296 ++++++ test/data/ontology_files/epo.owl | 18806 ++++++++++++++++ test/models/test_class_request_lang.rb | 14 + test/models/test_ontology_submission.rb | 31 +- 7 files changed, 26195 insertions(+), 266 deletions(-) create mode 100644 test/data/ontology_files/d3o.owl create mode 100644 test/data/ontology_files/epo.owl diff --git a/Gemfile.lock b/Gemfile.lock index bf497151..458756f5 100644 --- a/Gemfile.lock +++ b/Gemfile.lock @@ -55,15 +55,10 @@ GEM launchy (>= 2.1, < 4.0) mail (~> 2.7) eventmachine (1.2.7) - faraday (2.12.0) - faraday-net_http (>= 2.0, < 3.4) - json - logger - faraday-net_http (3.3.0) - net-http - ffi (1.17.0-aarch64-linux-gnu) - ffi (1.17.0-arm64-darwin) - ffi (1.17.0-x86_64-linux-gnu) + faraday (1.2.0) + multipart-post (>= 1.2, < 3) + ruby2_keywords + ffi (1.17.0) hashie (5.0.0) htmlentities (4.3.4) http-accept (1.7.0) @@ -87,9 +82,10 @@ GEM net-pop net-smtp method_source (1.1.0) - mime-types (3.5.2) + mime-types (3.6.0) + logger mime-types-data (~> 3.2015) - mime-types-data (3.2024.0903) + mime-types-data (3.2024.1001) mini_mime (1.1.5) minitest (4.7.5) minitest-reporters (0.14.24) @@ -98,8 +94,7 @@ GEM minitest (>= 2.12, < 5.0) powerbar multi_json (1.15.0) - net-http (0.4.1) - uri + multipart-post (2.4.1) net-http-persistent (2.9.4) net-imap (0.4.16) date @@ -128,7 +123,7 @@ GEM pry (0.14.2) coderay (~> 1.1) method_source (~> 1.0) - public_suffix (6.0.1) + public_suffix (5.1.1) racc (1.8.1) rack (2.2.9) rack-test (0.8.3) @@ -166,6 +161,7 @@ GEM rubocop-ast (1.32.3) parser (>= 3.3.1.0) ruby-progressbar (1.13.0) + ruby2_keywords (0.0.5) rubyzip (1.3.0) simplecov (0.22.0) docile (~> 1.1) @@ -185,13 +181,13 @@ GEM timeout (0.4.1) tzinfo (0.3.62) unicode-display_width (2.6.0) - uri (0.13.1) uuid (2.3.9) macaddr (~> 1.0) PLATFORMS aarch64-linux arm64-darwin-22 + arm64-darwin-23 x86_64-linux DEPENDENCIES diff --git a/lib/ontologies_linked_data/services/submission_process/operations/submission_rdf_generator.rb b/lib/ontologies_linked_data/services/submission_process/operations/submission_rdf_generator.rb index 9bb2682c..ea9a0c9f 100644 --- a/lib/ontologies_linked_data/services/submission_process/operations/submission_rdf_generator.rb +++ b/lib/ontologies_linked_data/services/submission_process/operations/submission_rdf_generator.rb @@ -11,6 +11,7 @@ def process(logger, options = {}) def handle_missing_labels(file_path, logger) callbacks = { + include_languages: true, missing_labels: { op_name: 'Missing Labels Generation', required: true, @@ -60,6 +61,10 @@ def loop_classes(logger, raw_paging, submission, callbacks) size = 2500 count_classes = 0 acr = submission.id.to_s.split("/")[-1] + + # include all languages in attributes of classes if asked for + incl_lang = callbacks.delete(:include_languages) + RequestStore.store[:requested_lang] = :ALL if incl_lang operations = callbacks.values.map { |v| v[:op_name] }.join(", ") time = Benchmark.realtime do @@ -161,6 +166,7 @@ def loop_classes(logger, raw_paging, submission, callbacks) @submission.save end end + RequestStore.store[:requested_lang] = nil if incl_lang end def generate_missing_labels_pre(artifacts = {}, logger, paging) @@ -185,26 +191,35 @@ def generate_missing_labels_each(artifacts = {}, logger, paging, page_classes, p prefLabel = nil if c.prefLabel.nil? - rdfs_labels = c.label + lang_rdfs_labels = c.label(include_languages: true) + lang_rdfs_labels = {none: []} if lang_rdfs_labels.empty? - if rdfs_labels && rdfs_labels.length > 1 && c.synonym.length > 0 - rdfs_labels = (Set.new(c.label) - Set.new(c.synonym)).to_a.first + lang_rdfs_labels&.each do |lang, rdfs_labels| + if rdfs_labels && rdfs_labels.length > 1 && c.synonym.length > 0 + rdfs_labels = (Set.new(c.label) - Set.new(c.synonym)).to_a.first - rdfs_labels = c.label if rdfs_labels.nil? || rdfs_labels.length == 0 - end + rdfs_labels = c.label if rdfs_labels.nil? || rdfs_labels.length == 0 + end - rdfs_labels = [rdfs_labels] if rdfs_labels and not (rdfs_labels.instance_of? Array) - label = nil + rdfs_labels = [rdfs_labels] if rdfs_labels and not (rdfs_labels.instance_of? Array) + label = nil - if rdfs_labels && rdfs_labels.length > 0 - # this sort is needed for a predictable label selection - label = rdfs_labels.sort[0] - else - label = LinkedData::Utils::Triples.last_iri_fragment c.id.to_s + if rdfs_labels && rdfs_labels.length > 0 + # this sort is needed for a predictable label selection + label = rdfs_labels.sort[0] + else + label = LinkedData::Utils::Triples.last_iri_fragment c.id.to_s + end + + if lang === :none + lang = nil + prefLabel = label + end + prefLabel = label if !prefLabel && lang === Goo.portal_language + prefLabel = label unless prefLabel + artifacts[:label_triples] << LinkedData::Utils::Triples.label_for_class_triple( + c.id, Goo.vocabulary(:metadata_def)[:prefLabel], label, lang) end - artifacts[:label_triples] << LinkedData::Utils::Triples.label_for_class_triple( - c.id, Goo.vocabulary(:metadata_def)[:prefLabel], label) - prefLabel = label else prefLabel = c.prefLabel end @@ -381,238 +396,6 @@ def delete_and_append(triples_file_path, logger, mime_type = nil) logger.flush end - def process_callbacks(logger, callbacks, action_name, &block) - callbacks.delete_if do |_, callback| - begin - if callback[action_name] - callable = @submission.method(callback[action_name]) - yield(callable, callback) - end - false - rescue Exception => e - logger.error("#{e.class}: #{e.message}\n#{e.backtrace.join("\n\t")}") - logger.flush - - if callback[:status] - add_submission_status(callback[:status].get_error_status) - @submission.save - end - - # halt the entire processing if :required is set to true - raise e if callback[:required] - # continue processing of other callbacks, but not this one - true - end - end - end - - def loop_classes(logger, raw_paging, callbacks) - page = 1 - size = 2500 - count_classes = 0 - acr = @submission.id.to_s.split("/")[-1] - operations = callbacks.values.map { |v| v[:op_name] }.join(", ") - - time = Benchmark.realtime do - paging = raw_paging.page(page, size) - cls_count_set = false - cls_count = class_count(logger) - - if cls_count > -1 - # prevent a COUNT SPARQL query if possible - paging.page_count_set(cls_count) - cls_count_set = true - else - cls_count = 0 - end - - iterate_classes = false - # 1. init artifacts hash if not explicitly passed in the callback - # 2. determine if class-level iteration is required - callbacks.each { |_, callback| callback[:artifacts] ||= {}; iterate_classes = true if callback[:caller_on_each] } - - process_callbacks(logger, callbacks, :caller_on_pre) { - |callable, callback| callable.call(callback[:artifacts], logger, paging) } - - page_len = -1 - prev_page_len = -1 - - begin - t0 = Time.now - page_classes = paging.page(page, size).all - total_pages = page_classes.total_pages - page_len = page_classes.length - - # nothing retrieved even though we're expecting more records - if total_pages > 0 && page_classes.empty? && (prev_page_len == -1 || prev_page_len == size) - j = 0 - num_calls = LinkedData.settings.num_retries_4store - - while page_classes.empty? && j < num_calls do - j += 1 - logger.error("Empty page encountered. Retrying #{j} times...") - sleep(2) - page_classes = paging.page(page, size).all - logger.info("Success retrieving a page of #{page_classes.length} classes after retrying #{j} times...") unless page_classes.empty? - end - - if page_classes.empty? - msg = "Empty page #{page} of #{total_pages} persisted after retrying #{j} times. #{operations} of #{acr} aborted..." - logger.error(msg) - raise msg - end - end - - if page_classes.empty? - if total_pages > 0 - logger.info("The number of pages reported for #{acr} - #{total_pages} is higher than expected #{page - 1}. Completing #{operations}...") - else - logger.info("Ontology #{acr} contains #{total_pages} pages...") - end - break - end - - prev_page_len = page_len - logger.info("#{acr}: page #{page} of #{total_pages} - #{page_len} ontology terms retrieved in #{Time.now - t0} sec.") - logger.flush - count_classes += page_classes.length - - process_callbacks(logger, callbacks, :caller_on_pre_page) { - |callable, callback| callable.call(callback[:artifacts], logger, paging, page_classes, page) } - - page_classes.each { |c| - process_callbacks(logger, callbacks, :caller_on_each) { - |callable, callback| callable.call(callback[:artifacts], logger, paging, page_classes, page, c) } - } if iterate_classes - - process_callbacks(logger, callbacks, :caller_on_post_page) { - |callable, callback| callable.call(callback[:artifacts], logger, paging, page_classes, page) } - cls_count += page_classes.length unless cls_count_set - - page = page_classes.next? ? page + 1 : nil - end while !page.nil? - - callbacks.each { |_, callback| callback[:artifacts][:count_classes] = cls_count } - process_callbacks(logger, callbacks, :caller_on_post) { - |callable, callback| callable.call(callback[:artifacts], logger, paging) } - end - - logger.info("Completed #{operations}: #{acr} in #{time} sec. #{count_classes} classes.") - logger.flush - - # set the status on actions that have completed successfully - callbacks.each do |_, callback| - if callback[:status] - add_submission_status(callback[:status]) - @submission.save - end - end - end - - def generate_missing_labels_pre(artifacts = {}, logger, paging) - file_path = artifacts[:file_path] - artifacts[:save_in_file] = File.join(File.dirname(file_path), "labels.ttl") - artifacts[:save_in_file_mappings] = File.join(File.dirname(file_path), "mappings.ttl") - property_triples = LinkedData::Utils::Triples.rdf_for_custom_properties(@submission) - Goo.sparql_data_client.append_triples(@submission.id, property_triples, mime_type = "application/x-turtle") - fsave = File.open(artifacts[:save_in_file], "w") - fsave.write(property_triples) - fsave_mappings = File.open(artifacts[:save_in_file_mappings], "w") - artifacts[:fsave] = fsave - artifacts[:fsave_mappings] = fsave_mappings - end - - def generate_missing_labels_pre_page(artifacts = {}, logger, paging, page_classes, page) - artifacts[:label_triples] = [] - artifacts[:mapping_triples] = [] - end - - def generate_missing_labels_each(artifacts = {}, logger, paging, page_classes, page, c) - prefLabel = nil - - if c.prefLabel.nil? - rdfs_labels = c.label - - if rdfs_labels && rdfs_labels.length > 1 && c.synonym.length > 0 - rdfs_labels = (Set.new(c.label) - Set.new(c.synonym)).to_a.first - - if rdfs_labels.nil? || rdfs_labels.length == 0 - rdfs_labels = c.label - end - end - - if rdfs_labels and not (rdfs_labels.instance_of? Array) - rdfs_labels = [rdfs_labels] - end - label = nil - - if rdfs_labels && rdfs_labels.length > 0 - label = rdfs_labels[0] - else - label = LinkedData::Utils::Triples.last_iri_fragment c.id.to_s - end - artifacts[:label_triples] << LinkedData::Utils::Triples.label_for_class_triple( - c.id, Goo.vocabulary(:metadata_def)[:prefLabel], label) - prefLabel = label - else - prefLabel = c.prefLabel - end - - if @submission.ontology.viewOf.nil? - loomLabel = OntologySubmission.loom_transform_literal(prefLabel.to_s) - - if loomLabel.length > 2 - artifacts[:mapping_triples] << LinkedData::Utils::Triples.loom_mapping_triple( - c.id, Goo.vocabulary(:metadata_def)[:mappingLoom], loomLabel) - end - artifacts[:mapping_triples] << LinkedData::Utils::Triples.uri_mapping_triple( - c.id, Goo.vocabulary(:metadata_def)[:mappingSameURI], c.id) - end - end - - def generate_missing_labels_post_page(artifacts = {}, logger, paging, page_classes, page) - rest_mappings = LinkedData::Mappings.migrate_rest_mappings(@submission.ontology.acronym) - artifacts[:mapping_triples].concat(rest_mappings) - - if artifacts[:label_triples].length > 0 - logger.info("Asserting #{artifacts[:label_triples].length} labels in " + - "#{@submission.id.to_ntriples}") - logger.flush - artifacts[:label_triples] = artifacts[:label_triples].join("\n") - artifacts[:fsave].write(artifacts[:label_triples]) - t0 = Time.now - Goo.sparql_data_client.append_triples(@submission.id, artifacts[:label_triples], mime_type = "application/x-turtle") - t1 = Time.now - logger.info("Labels asserted in #{t1 - t0} sec.") - logger.flush - else - logger.info("No labels generated in page #{page}.") - logger.flush - end - - if artifacts[:mapping_triples].length > 0 - logger.info("Asserting #{artifacts[:mapping_triples].length} mappings in " + - "#{@submission.id.to_ntriples}") - logger.flush - artifacts[:mapping_triples] = artifacts[:mapping_triples].join("\n") - artifacts[:fsave_mappings].write(artifacts[:mapping_triples]) - - t0 = Time.now - Goo.sparql_data_client.append_triples(@submission.id, artifacts[:mapping_triples], mime_type = "application/x-turtle") - t1 = Time.now - logger.info("Mapping labels asserted in #{t1 - t0} sec.") - logger.flush - end - end - - def generate_missing_labels_post(artifacts = {}, logger, paging) - logger.info("end generate_missing_labels traversed #{artifacts[:count_classes]} classes") - logger.info("Saved generated labels in #{artifacts[:save_in_file]}") - artifacts[:fsave].close() - artifacts[:fsave_mappings].close() - logger.flush - end - def generate_obsolete_classes(logger, file_path) @submission.bring(:obsoleteProperty) if @submission.bring?(:obsoleteProperty) @submission.bring(:obsoleteParent) if @submission.bring?(:obsoleteParent) diff --git a/lib/ontologies_linked_data/utils/triples.rb b/lib/ontologies_linked_data/utils/triples.rb index 590d7324..7a138522 100644 --- a/lib/ontologies_linked_data/utils/triples.rb +++ b/lib/ontologies_linked_data/utils/triples.rb @@ -69,10 +69,17 @@ def self.rdf_for_custom_properties(ont_sub) return (triples.join "\n") end - def self.label_for_class_triple(class_id,property,label) + def self.label_for_class_triple(class_id, property, label, language=nil) label = label.to_s.gsub('\\','\\\\\\\\') label = label.gsub('"','\"') - return triple(class_id,property,RDF::Literal.new(label, :datatype => RDF::XSD.string)) + params = { datatype: RDF::XSD.string } + lang = language.to_s.downcase + + if !lang.empty? && lang.to_sym != :none + params[:datatype] = RDF.langString + params[:language] = lang.to_sym + end + return triple(class_id, property, RDF::Literal.new(label, params)) end def self.generated_label(class_id, existing_label) diff --git a/test/data/ontology_files/d3o.owl b/test/data/ontology_files/d3o.owl new file mode 100644 index 00000000..c1b20435 --- /dev/null +++ b/test/data/ontology_files/d3o.owl @@ -0,0 +1,7296 @@ + + + + + + + + + + + + + Julia Koblitz, DSMZ + + + + DSMZ Digital Diversity Ontology (D3O) + + + + The DSMZ Digital Diversity Ontology (D3O) is an ontology designed to standardize and integrate data related to microbial diversity and associated resources within the context of the DSMZ’s Digital Diversity Knowledge Graph. This ontology provides a structured framework to represent various aspects of microbial data, including taxonomic information, strain properties, cultivation conditions, and media links. D3O facilitates cross-referencing between internal DSMZ datasets and external biological resources, supporting enhanced data discovery, interoperability, and research in microbiology, genomics, and metabolomics. The ontology includes both object properties, which link entities such as bacterial strains to external resources (e.g., literature references or media descriptions), and data properties, which associate entities with literal values (e.g., taxonomic identifiers, growth conditions). Designed for use in RDF-based knowledge graphs, D3O supports flexible integration with other life science ontologies, promoting consistency and reuse in the broader scientific community. + + + + 1.1 + + + + https://bioportal.bioontology.org/ontologies/D3O + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + owl:topDataProperty + TopDataProperty + + + + Activator + An effector molecule that increases the activity of an enzyme or protein, often by stabilizing its active form or enhancing its affinity for a substrate. + + + + Activator + Activator + + + + Alcohol + An organic compound in which a hydroxyl group (-OH) is bound to a carbon atom. Alcohols are used in a wide range of industrial and pharmaceutical applications, with ethanol (C₂H₅OH) being one of the most well-known types due to its role in beverages and as a solvent. + + + + Alcohol + Alcohol + + + + Aldehyde + An organic compound containing a carbonyl group (C=O) bonded to at least one hydrogen atom. Aldehydes are key intermediates in organic reactions and are used in the synthesis of various chemicals, including fragrances and preservatives. Formaldehyde (CH₂O) is a common example. + + + + Aldehyde + Aldehyde + + + + AminoAcidMetabolism + A metabolic pathway that involves the synthesis and breakdown of amino acids, which are essential for protein production and various cellular functions. + + + + AminoAcidMetabolism + Amino Acid Metabolism + + + + AnaerobicBacteria + Bacteria that grow in environments devoid of oxygen. These organisms often thrive in habitats such as soil, sediments, and the human gut. + + + + AnaerobicBacteria + Anaerobic Bacteria + + + + AnatomicStructure + Anatomic Structure + + + + AnimalPathogenicity + The capacity of an organism to cause disease in animals, including livestock, wildlife, and pets. + + + + AnimalPathogenicity + Animal Pathogenicity + + + + AnorganicCompound + Refers to compounds that do not contain carbon-hydrogen bonds, typically derived from minerals or non-living matter. Inorganic compounds play vital roles in various chemical reactions and industrial processes + + + + AnorganicCompound + Anorganic Compound + + + + AnorganicMolecule + A molecule that lacks carbon-hydrogen bonds, typically composed of non-metallic and metallic elements. Examples include water (H₂O), carbon dioxide (CO₂), and sulfuric acid (H₂SO₄). + + + + AnorganicMolecule + Anorganic Molecule + + + + Archaea + A domain of prokaryotic microorganisms that are distinct from bacteria. Archaea often thrive in extreme environments, such as hot springs and salt lakes, and have unique biochemical pathways. + + + + Archaea + Archaea + + + + BRENDALigand + BRENDA Ligand + + + + BRENDALigand-ID + An identifier used in the BRENDA enzyme database to refer to specific ligands or compounds that interact with enzymes. + + + + Bacteria + Single-celled prokaryotes that are found in virtually every environment on Earth. Bacteria can be both beneficial (e.g., in digestion and fermentation) and pathogenic, playing essential roles in ecological processes and biotechnology. + + + + Bacteria + Bacteria + + + + BioCycCompound + BioCyc Compound + + + + BioCycCompound-ID + An identifier used in the BioCyc database to represent specific chemical compounds. + + + + BiochemicalPathway + A series of interconnected biochemical reactions that occur within a cell or organism to carry out essential functions such as metabolism, signal transduction, or energy production. + + + + BiochemicalPathway + Biochemical Pathway + + + + BiochemicalReaction + A chemical reaction that occurs within living organisms, often catalyzed by enzymes, and is essential for metabolism, growth, and cellular function. + + + + BiochemicalReaction + Biochemical Reaction + + + + BiologicalMaterial + Biological Material + + + + BiologicalRole + Describes the functional role that a substance or organism plays in a biological context, such as its part in metabolism, growth, or interaction with other entities. + + + + BiologicalRole + Biological Role + + + + Blood + Blood + + + + BodyFluid + Body Fluid + + + + CASRegistryNumber + A unique numerical identifier assigned by the Chemical Abstracts Service (CAS) to every chemical substance described in the open scientific literature. + + + + CASRegistryNumber + CASRegistry Number + + + + CarbohydratePathway + A metabolic pathway responsible for the breakdown and synthesis of carbohydrates, including sugars, which are key sources of energy for living organisms. + + + + CarbohydratePathway + Carbohydrate Pathway + + + + CarbonSource + A biological role in which a substance provides carbon atoms, typically serving as the backbone for organic molecules during metabolism. Examples include glucose and other sugars used by organisms for energy. + + + + CarbonSource + Carbon Source + + + + CellArrangement + The pattern in which cells are organized or grouped, such as chains (strepto-), clusters (staphylo-), or pairs (diplo-). This is a distinguishing feature for many types of microorganisms. + + + + CellArrangement + Cell Arrangement + + + + CellDensity + The number of cells within a given volume or area, typically used to measure the growth or concentration of cells in culture or environmental samples. + + + + CellDensity + Cell Density + + + + CellLine + Cell Line + + + + CellMorphology + The study of the structure and form of cells, including features such as shape, size, pigmentation, and arrangement. Cell morphology is a key aspect of microbial identification and classification. + + + + CellMorphology + Cell Morphology + + + + CellMotility + The ability of cells to move by themselves using mechanisms such as flagella, cilia, or pseudopodia. Motility is an important characteristic for distinguishing microorganisms and understanding their behavior. + + + + CellMotility + Cell Motility + + + + CellPigmentation + The coloration of cells, which can be due to pigments produced by the organism. Cell pigmentation is often used in microbial classification and may indicate specific metabolic processes. + + + + CellPigmentation + Cell Pigmentation + + + + CellShape + The physical shape of a microorganism's cell, such as rod-shaped (bacillus), spherical (coccus), or spiral-shaped (spirillum). Cell shape is an important taxonomic characteristic. + + + + CellShape + Cell Shape + + + + CellSize + The dimensions or volume of a microorganism's cell, which can vary widely among species and is used in the identification and classification of microorganisms. + + + + CellSize + Cell Size + + + + ChEBI + ChEBI + + + + ChEBI-ID + An identifier used by the Chemical Entities of Biological Interest (ChEBI) database to represent biologically relevant molecules. + + + + ChEMBL + ChEMBL + + + + ChEMBL-ID + An identifier used in the ChEMBL database to track bioactive drug-like compounds. + + + + Chaperone + A type of protein that assists other proteins in folding into their proper three-dimensional structures. Chaperones play a crucial role in ensuring proteins reach their functional forms and preventing misfolding and aggregation. + + + + Chaperone + Chaperone + + + + ChemSpider + Chem Spider + + + + ChemSpider-ID + An identifier used by ChemSpider to represent chemical structures and associated data. + + + + ChemicalCompound + A substance composed of two or more different elements chemically bonded together in a fixed ratio. Compounds can be broken down into simpler substances through chemical reactions and are classified based on their chemical structure and properties. + + + + ChemicalCompound + Chemical Compound + + + + ChemicalMaterial + Represents any substance with a defined chemical composition, including elements, molecules, and mixtures. Chemical materials are fundamental to processes in biology, chemistry, and physics, and include both organic and inorganic compounds. + + + + ChemicalMaterial + Chemical Material + + + + ChemicalRole + Describes the functional role a chemical substance plays in a reaction, pathway, or process, such as a catalyst, substrate, or product. + + + + ChemicalRole + Chemical Role + + + + Class + A rank used in the biological classification that groups organisms sharing common traits, placed below the phylum and above the order. + + + + Class + Class + + + + Cofactor + A non-protein chemical compound or metallic ion required by an enzyme to carry out its biological function. Cofactors are often involved in electron transfer, stabilization of intermediates, or catalysis. + + + + Cofactor + Cofactor + + + + CofactorsAndVitaminsMetabolism + A metabolic pathway involved in the biosynthesis and utilization of cofactors and vitamins, which are essential molecules for enzyme function and other biochemical processes. + + + + CofactorsAndVitaminsMetabolism + Cofactors and Vitamins Metabolism + + + + ColonyColor + The color or pigmentation of a microbial colony, which can provide insights into the organism's metabolism or the presence of specific pigments. + + + + ColonyColor + Colony Color + + + + ColonyMorphology + The visible characteristics of microbial colonies grown on solid media, including aspects such as color, shape, and size. Colony morphology is used in microbial identification. + + + + ColonyMorphology + Colony Morphology + + + + ColonyShape + The overall shape of a microbial colony when grown on solid media, which can vary from round, irregular, filamentous, or others, depending on the species. + + + + ColonyShape + Colony Shape + + + + ColonySize + The diameter or size of a microbial colony on solid media, which can be an important distinguishing feature among species. + + + + ColonySize + Colony Size + + + + Color + A visual property or attribute of an object or substance based on the wavelengths of light it reflects or emits, perceived by human vision as hues such as red, blue, or green. + + + + Color + Color + + + + CompoundIdentifier + An identifier used to track chemical compounds across various scientific and chemical databases. + + + + CompoundIdentifier + Compound Identifier + + + + CompoundName + The standard or systematic name assigned to a chemical compound. + + + + CompoundName + Compound Name + + + + Concentration + The amount of a substance within a specific volume or solution, typically expressed in units such as moles per liter (M) or mass per volume. Concentration is a key property in chemical and biological experiments. + + + + Concentration + Concentration + + + + ConceptualEntity + An abstract class representing non-physical entities, concepts, or roles that play a part in biological, chemical, or environmental processes. Conceptual entities are used to describe functional roles, classifications, and conditions within scientific frameworks. + + + + ConceptualEntity + Conceptual Entity + + + + Contamination + The presence of an unwanted substance, organism, or impurity within a sample, which can affect its purity, quality, or accuracy in experimental procedures. + + + + Contamination + Contamination + + + + Coordinate + A set of values that represent the exact position of a point on the Earth’s surface, typically given in latitude and longitude. + + + + Coordinate + Coordinate + + + + CultivationCondition + A biological role that encompasses the specific environmental or nutritional conditions required for growing microorganisms or cells. These conditions can vary based on temperature, pH, and available nutrients. + + + + CultivationCondition + Cultivation Condition + + + + CultivationMedium + A substance or mixture of substances that supports the growth, reproduction, and maintenance of microorganisms or cells. Cultivation media are used in microbiology, biotechnology, and cell biology to provide nutrients, moisture, and the appropriate environment for biological entities. + + + + CultivationMedium + Cultivation Medium + + + + CultivationTime + The amount of time an organism, such as bacteria or cells, is allowed to grow in culture under controlled conditions. + + + + CultivationTime + Cultivation Time + + + + CultureCollection + A curated repository of biological specimens, typically microorganisms such as bacteria, fungi, viruses, or cell lines, that are preserved for research, industrial, and medical purposes. Culture collections ensure the long-term preservation of biological diversity and provide standardized, authenticated strains for scientific study and biotechnological applications. They often serve as reference centers for strain identification, characterization, and distribution. Examples include well-known collections like ATCC (American Type Culture Collection) and DSMZ (German Collection of Microorganisms and Cell Cultures). + + + + CultureCollection + Culture Collection + + + + CultureCollectionNumber + A unique identifier assigned to a strain stored in a culture collection, often used for accessing strain data and ordering. + + + + CultureCollectionNumber + Culture Collection Number + + + + CultureCondition + Describes specific environmental conditions required for growing organisms in a controlled environment, such as the type of medium, pH, and temperature. + + + + CultureCondition + Culture Condition + + + + CultureMedium + A substance or mixture that provides the nutrients necessary for microorganisms or cells to grow in laboratory conditions. Culture media can be defined or complex, depending on their composition. + + + + CultureMedium + Culture Medium + + + + CulturePH + The measure of acidity or alkalinity in a culture environment. The pH of the medium influences the growth and metabolic activity of organisms. + + + + CulturePH + Culture pH + + + + CultureTemperature + The temperature at which a culture is maintained to optimize the growth of the organism. Different organisms require specific temperature ranges for ideal growth conditions. + + + + CultureTemperature + Culture Temperature + + + + Cytokine + A category of signaling proteins involved in cell communication, particularly in immune responses. Cytokines regulate the behavior of immune cells and can stimulate or inhibit various functions such as inflammation, cell growth, and apoptosis. + + + + Cytokine + Cytokine + + + + DNASequence + A sequence of nucleotides within DNA that encodes genetic information. DNA sequences are responsible for heredity and govern cellular functions through gene expression. + + + + DNASequence + DNASequence + + + + DOI + A Digital Object Identifier (DOI) is a persistent identifier or handle used to uniquely identify objects, such as electronic documents. + + + + DOI + DOI + + + + Dataset + A structured collection of data, often presented in tabular or other formats, that is used for analysis, research, or reference purposes. Datasets can consist of numerical, textual, or categorical information. + + + + Dataset + Dataset + + + + DegradationPathway + A metabolic pathway that involves the breakdown of complex molecules into simpler ones, often for the purpose of recycling or energy production. + + + + DegradationPathway + Degradation Pathway + + + + Density + The mass of a substance per unit volume, often expressed as grams per cubic centimeter (g/cm³) or kilograms per liter (kg/L). Density is an important physical property for characterizing substances. + + + + Density + Density + + + + Diversity + A measure of the variety or heterogeneity within a sample, population, or ecosystem, often used in ecological, biological, or genetic studies to describe variation among species or genetic traits. + + + + Diversity + Diversity + + + + Domain + The highest taxonomic rank in biological classification, dividing life into three domains: Archaea, Bacteria, and Eukarya. + + + + Domain + Domain + + + + DoublingTime + The period required for a population of cells or organisms to double in size, often used in microbiology and cell biology to assess growth rates. + + + + DoublingTime + Doubling Time + + + + Drug + A chemical substance used in the treatment, diagnosis, prevention, or mitigation of diseases or medical conditions. Drugs can have therapeutic or toxic effects and are often rigorously tested and regulated before use in medicine. + + + + Drug + Drug + + + + DrugOrDisease + Drug or Disease + + + + DrugOrDisease-associatedPathway + A biochemical pathway that is directly related to the metabolism or mechanism of action of drugs or is associated with a specific disease, often targeted for therapeutic interventions. + + + + ECNumber + A numerical classification scheme for enzymes based on the chemical reactions they catalyze, as defined by the Enzyme Commission (EC). + + + + ECNumber + ECNumber + + + + Effector + A molecule that modulates the activity of a protein, typically an enzyme or receptor. Effectors can either enhance or inhibit the activity of their target molecule. + + + + Effector + Effector + + + + ElectronAcceptor + A chemical role where a molecule receives electrons during a redox (reduction-oxidation) reaction. Electron acceptors play a crucial role in processes such as respiration and photosynthesis. + + + + ElectronAcceptor + Electron Acceptor + + + + EnergyMetabolism + A set of metabolic pathways that are involved in the generation and use of energy within an organism, typically through processes like cellular respiration and photosynthesis. + + + + EnergyMetabolism + Energy Metabolism + + + + EnergySource + Describes a role in which a substance provides energy to an organism, often through metabolic processes like glycolysis or oxidative phosphorylation. Common energy sources include sugars, fats, and light (for photosynthetic organisms). + + + + EnergySource + The type of substance or process that an organism uses to obtain energy, such as light (photosynthesis), organic compounds, or inorganic compounds. The energy source plays a crucial role in an organism's metabolic phenotype. + + + + EnergySource + Energy Source + + + + EnrichmentProcedure + A type of isolation procedure where specific conditions are used to enhance the growth of a particular organism or group of organisms, making it easier to isolate them from a mixed community. + + + + EnrichmentProcedure + Enrichment Procedure + + + + EnsemblGeneID + A unique identifier used in the Ensembl database to refer to a specific gene. + + + + EnsemblGeneID + Ensembl GeneID + + + + EnsemblProteinID + An identifier used in the Ensembl database to refer to a specific protein sequence encoded by a gene. + + + + EnsemblProteinID + Ensembl ProteinID + + + + Environment + A conceptual entity describing the physical surroundings or conditions in which an organism lives or a process occurs. Environments can be natural or artificial. + + + + Environment + Environment + + + + EnvironmentalCondition + Describes any external factor or set of factors in the surrounding environment that can influence the growth, behavior, or survival of an organism. Environmental conditions play a crucial role in determining how organisms interact with their habitat and can include factors like temperature, pH, humidity, and light. + + + + EnvironmentalCondition + Environmental Condition + + + + Enzyme + A biological catalyst that accelerates chemical reactions in the body. Enzymes are essential for nearly all metabolic processes and are highly specific for their substrates. + + + + Enzyme + Enzyme + + + + EnzymeActivityAlteration + A process in which the activity of an enzyme is either increased or decreased due to factors such as the presence of inhibitors, activators, or post-translational modifications. + + + + EnzymeActivityAlteration + Enzyme Activity Alteration + + + + EnzymeIdentifier + A general identifier used to refer to specific enzymes, often based on a classification system like the EC number. + + + + EnzymeIdentifier + Enzyme Identifier + + + + EnzymeName + The common or systematic name of an enzyme, often used to describe its function or substrate specificity. + + + + EnzymeName + Enzyme Name + + + + Eukaryotes + Organisms whose cells contain a nucleus and other organelles enclosed within membranes. This group includes animals, plants, fungi, and protists. + + + + Eukaryotes + Eukaryotes + + + + ExpressionFeature + A specific aspect or characteristic of gene or protein expression, such as the presence of regulatory elements, response to stimuli, or expression level patterns across tissues or conditions. + + + + ExpressionFeature + Expression Feature + + + + ExpressionLevel + The quantity of a gene product, such as mRNA or protein, that is produced in a cell or tissue under specific conditions. Expression level is a key attribute in gene expression studies and functional genomics. + + + + ExpressionLevel + Expression Level + + + + FASTA + A text-based file format commonly used for storing nucleotide or peptide sequences, with each sequence identified by a header line starting with a “>” symbol. + + + + FASTA + FASTA + + + + FASTQ + A file format used for storing nucleotide sequences along with their corresponding quality scores, commonly used in high-throughput sequencing technologies. + + + + FASTQ + FASTQ + + + + Family + A rank in biological classification that groups together genera with common characteristics, placed below order and above genus. + + + + Family + Family + + + + Feature + A characteristic or measurable aspect of an entity, often used to describe specific elements or attributes in biological sequences, structures, or functions. + + + + Feature + Feature + + + + FileFormat + A conceptual entity representing the structure and encoding of files used in biological, chemical, or other scientific contexts. + + + + FileFormat + File Format + + + + FlowRate + The volume of fluid or gas passing through a point or conduit over a specific period, often measured in liters per second (L/s) or cubic meters per hour (m³/h). + + + + FlowRate + Flow Rate + + + + FoodOrFoodProduct + Any substance consumed for nutritional support, energy, or enjoyment. Food products can be processed or unprocessed and typically consist of proteins, fats, carbohydrates, vitamins, and minerals essential for an organism’s health and growth. Examples include fruits, vegetables, meats, and processed foods. + + + + FoodOrFoodProduct + Food or Food Product + + + + FunctionalAnnotation + Describes the assignment of functional roles to genes, proteins, or other biological entities based on experimental or computational analysis. + + + + FunctionalAnnotation + Functional Annotation + + + + GCContent + The percentage of guanine (G) and cytosine (C) bases in a DNA or RNA molecule, often used as an indicator of stability and gene expression potential in a sequence. + + + + GCContent + GCContent + + + + GMO + Genetically Modified Organisms (GMOs) have had their genomes altered through genetic engineering, often to enhance traits such as resistance to pests or herbicides. + + + + GMO + GMO + + + + Gas + A state of matter where the substance expands freely to fill any space available, with molecules in constant random motion. Common gases include oxygen (O₂), nitrogen (N₂), and hydrogen (H₂), which are critical for biological and chemical processes. + + + + Gas + Gas + + + + Gender + A biological and social characteristic of organisms that distinguishes male, female, and in some species, additional sex or gender categories. + + + + Gender + Gender + + + + GeneExpression + The process by which genetic information encoded in DNA is transcribed and translated to produce functional products, such as proteins, influencing cellular structure and function. + + + + GeneExpression + Gene Expression + + + + GeneIdentifier + A unique identifier for a specific gene, used in various biological and genomic databases. + + + + GeneIdentifier + Gene Identifier + + + + GeneProduct + Any biochemical substance that is the result of gene expression, including proteins and various forms of RNA. Gene products are central to cellular function and metabolism, acting in processes such as catalysis, structural support, and regulation. + + + + GeneProduct + Gene Product + + + + GeneSequence + A specific sequence of DNA that contains the necessary information to produce a functional product, typically a protein. Gene sequences are the fundamental units of heredity. + + + + GeneSequence + Gene Sequence + + + + GeneralStability + The overall stability of a substance, referring to its ability to remain intact and functional under a variety of conditions, including temperature, pressure, and exposure to light or chemicals. + + + + GeneralStability + General Stability + + + + GenomeIdentifier + An identifier used to refer to a specific genome sequence in a database. + + + + GenomeIdentifier + Genome Identifier + + + + GenomeSequence + The complete DNA sequence of an organism's genome, encompassing all of its genes and non-coding regions. Genome sequencing allows the study of the full genetic content of an organism. + + + + GenomeSequence + Genome Sequence + + + + Genus + A rank in biological classification that groups together species with similar characteristics. The genus is placed above species and below family. + + + + Genus + Genus + + + + GeographicArea + Represents a defined physical space on Earth, often identified through coordinates or place names. + + + + GeographicArea + Geographic Area + + + + GeographicLocation + A property or attribute that defines the specific location of an object or organism on Earth, typically expressed through coordinates such as latitude and longitude. + + + + GeographicLocation + Geographic Location + + + + GlycanMetabolism + A metabolic pathway that involves the synthesis and breakdown of glycans (polysaccharides), which are important for energy storage, structural support, and cellular signaling. + + + + GlycanMetabolism + Glycan Metabolism + + + + GramNegativeBacteria + Bacteria that do not retain the crystal violet stain used in Gram staining. Gram-negative bacteria have an outer membrane and are often resistant to certain antibiotics. + + + + GramNegativeBacteria + Gram Negative Bacteria + + + + GramPositiveBacteria + Bacteria that retain the crystal violet stain used in Gram staining. Gram-positive bacteria have a thick peptidoglycan layer in their cell walls. + + + + GramPositiveBacteria + Gram Positive Bacteria + + + + GramStain + A differential staining technique used to classify bacteria based on the composition of their cell walls. Bacteria can be categorized as Gram-positive or Gram-negative based on their response to the stain. + + + + GramStain + Gram Stain + + + + GramStain + http://purl.obolibrary.org/obo/OMP_0000191 + + + + GrowthFactor + Proteins that stimulate cell proliferation, differentiation, and survival. Growth factors are key regulators in developmental processes and tissue repair. + + + + GrowthFactor + Growth Factor + + + + GrowthPH + Growth pH + + + + GrowthRate + The rate at which an organism increases in size, mass, or population over time, typically expressed as a change per unit of time. + + + + GrowthRate + Growth Rate + + + + GrowthSalinity + The specific range of salinity in which an organism can grow and reproduce effectively. This varies widely among organisms depending on their tolerance to salt concentration. + + + + GrowthSalinity + Growth Salinity + + + + GrowthTemperature + The specific range of temperature within which an organism can grow and reproduce. This range varies for different organisms, depending on their environmental adaptations. + + + + GrowthTemperature + Growth Temperature + + + + HTML + A markup language used for structuring and displaying content on the web. HTML files contain elements such as text, images, and links that are used to build websites. + + + + HTML + HTML + + + + Habitat + A specific environment where an organism lives, which provides the necessary resources and conditions for its survival and reproduction. + + + + Habitat + Habitat + + + + Height + A measure of the vertical dimension of an object or organism from its base to its highest point. + + + + Height + Height + + + + Host + An organism that harbors a parasite, symbiont, or pathogen, providing nutrients or shelter. Hosts can be plants, animals, or microorganisms. + + + + Host + Host + + + + HumanPathogenicity + The ability of an organism to cause disease in humans. Pathogenic organisms include bacteria, viruses, fungi, and parasites. + + + + HumanPathogenicity + Human Pathogenicity + + + + Humidity + The concentration of water vapor in the air, typically expressed as a percentage. Humidity affects various environmental and biological processes, including climate, respiration, and microbial growth. + + + + Humidity + Humidity + + + + Hydrolases + A class of enzymes that catalyze the hydrolysis of chemical bonds, breaking down molecules by adding water. Examples include proteases, lipases, and nucleases. + + + + Hydrolases + Hydrolases + + + + IC50 + The half-maximal inhibitory concentration (IC50) is a measure of the effectiveness of a substance in inhibiting a specific biological or biochemical function, typically used in drug discovery and toxicology. + + + + IC50 + IC50 + + + + IUPACName + The systematic name of a chemical compound, as determined by the International Union of Pure and Applied Chemistry (IUPAC). + + + + IUPACName + IUPACName + + + + Identifier + A general term for a unique sequence or number used to identify a specific entity, such as a molecule, enzyme, gene, or organism in scientific databases. + + + + Identifier + Identifier + + + + Inchi + The IUPAC International Chemical Identifier (InChI) is a textual identifier for chemical substances, designed to provide a standard way to encode molecular information. + + + + Inchi + Inchi + + + + InchiKey + A condensed, fixed-length version of the InChI, designed to be a more accessible way of indexing chemical substances. + + + + InchiKey + Inchi Key + + + + IndustrialWaste + Refers to environments that contain byproducts of industrial processes, often with chemicals or substances that can affect ecosystems or organisms living there. + + + + IndustrialWaste + Industrial Waste + + + + Ingredient + A chemical substance that is part of a mixture or formulation, such as an ingredient in a cultivation medium, food product, or pharmaceutical preparation. + + + + Ingredient + Ingredient + + + + Inhibitor + An effector molecule that decreases the activity of an enzyme or protein, often by binding to its active site or altering its conformation. + + + + Inhibitor + Inhibitor + + + + IsolationHost + The specific organism from which a biological sample, strain, or microorganism was isolated. The host can play a significant role in determining the characteristics of the isolated strain. + + + + IsolationHost + Isolation Host + + + + IsolationInformation + Information related to the process and circumstances of isolating a biological sample, such as the host from which it was taken, the procedure used, and the source of isolation. + + + + IsolationInformation + Isolation Information + + + + IsolationProcedure + The method or protocol used to obtain a biological specimen from its natural or artificial environment. This can include various techniques for ensuring the viability of the sample. + + + + IsolationProcedure + Isolation Procedure + + + + IsolationSource + The specific material or environment from which a biological sample was taken, such as soil, water, or an organism. The source of isolation can influence the characteristics of the specimen. + + + + IsolationSource + Isolation Source + + + + Isomerases + Enzymes that catalyze the rearrangement of bonds within a molecule, changing it from one isomer to another. These enzymes are critical in metabolic pathways, such as glycolysis. + + + + Isomerases + Isomerases + + + + JSON + A lightweight data-interchange format that is easy for humans to read and write, and easy for machines to parse and generate. JSON is often used for transmitting data between web applications and servers. + + + + JSON + JSON + + + + KEGGCompound + KEGGCompound + + + + KEGGCompound-ID + An identifier used in the KEGG database to represent specific chemical compounds involved in metabolic pathways. + + + + Kingdom + A high-level taxonomic rank that groups organisms into major categories based on fundamental characteristics, such as Animalia, Plantae, and Fungi. + + + + Kingdom + Kingdom + + + + Km + The Michaelis constant (Km) is a measure of the substrate concentration at which an enzyme-catalyzed reaction proceeds at half its maximum velocity, providing insight into enzyme affinity for a substrate. + + + + Km + Km + + + + LSU + The rRNA component of the large subunit of the ribosome, involved in catalyzing peptide bond formation during protein synthesis. + + + + LSU + LSU + + + + Lake + A freshwater or saline body of water that provides a habitat for various organisms. Lakes support unique ecosystems and can be subject to environmental changes such as pollution or climate variations. + + + + Lake + Lake + + + + Latitude + A geographic coordinate that specifies the north-south position of a point on the Earth's surface, measured in degrees from the equator. + + + + Latitude + Latitude + + + + Length + A measure of the distance from one end of an object to the other, typically in the longest dimension. + + + + Length + Length + + + + Ligases + Enzymes that catalyze the joining of two molecules by forming new chemical bonds, often requiring energy from ATP. Ligases play an important role in DNA replication and repair. + + + + Ligases + Ligases + + + + Light + A physical parameter referring to electromagnetic radiation that is visible to the human eye. Light intensity and wavelength can significantly affect biological processes such as photosynthesis. + + + + Light + Light + + + + LipidMetabolism + A metabolic pathway responsible for the synthesis, breakdown, and storage of lipids (fats), which are crucial for energy storage, cell membrane structure, and signaling. + + + + LipidMetabolism + Lipid Metabolism + + + + Literature + Published works, including scientific papers, articles, books, and reports, that provide information, research findings, or reviews in a specific field of study. Literature serves as a key source of knowledge and reference. + + + + Literature + Literature + + + + LiteratureIdentifier + A type of identifier used to reference scientific literature or publications, often linked to specific articles or datasets. + + + + LiteratureIdentifier + Literature Identifier + + + + LocationOfOrigin + The geographic or environmental location where a biological specimen was originally found or collected. This can refer to a specific country, region, or ecosystem. + + + + LocationOfOrigin + Location of Origin + + + + LocusTag + A unique identifier for a gene or locus within a particular genome, often used in microbial genome annotation. + + + + LocusTag + Locus Tag + + + + Longitude + A geographic coordinate that specifies the east-west position of a point on the Earth's surface, measured in degrees from the prime meridian. + + + + Longitude + Longitude + + + + Lyases + A class of enzymes that catalyze the breaking of chemical bonds by means other than hydrolysis or oxidation, often forming double bonds or ring structures. Examples include decarboxylases and dehydratases. + + + + Lyases + Lyases + + + + Lymph + Lymph + + + + MarineOrganism + An organism that lives in or is dependent on marine environments such as oceans or seas. Marine organisms include fish, corals, and various microorganisms. + + + + MarineOrganism + Marine Organism + + + + MaximumPH + Maximum pH + + + + MaximumSalinity + The highest concentration of salt in an environment that an organism can tolerate without experiencing significant physiological stress or mortality. + + + + MaximumSalinity + Maximum Salinity + + + + MaximumTemperature + The highest temperature at which an organism can survive or remain active. Above this temperature, proteins may denature, and cellular processes can fail, leading to organism death. + + + + MaximumTemperature + Maximum Temperature + + + + MetabolicPathway + A biochemical pathway that involves the series of reactions responsible for the production, conversion, and breakdown of molecules within an organism to sustain life, provide energy, and maintain cellular structures. + + + + MetabolicPathway + Metabolic Pathway + + + + MetabolicPhenotype + The set of traits related to an organism's metabolic processes, including the utilization of energy sources, nutrient requirements, and tolerance to environmental factors such as oxygen and salt. + + + + MetabolicPhenotype + Metabolic Phenotype + + + + MetabolicPhenotype + http://purl.jp/bio/10/mpo#MPO_04000 + + + + MetabolicProcess + A broad term for the chemical reactions and pathways occurring within a cell or organism that allow it to grow, reproduce, maintain its structures, and respond to environmental changes. + + + + MetabolicProcess + Metabolic Process + + + + Metazoa + Multicellular animals that form a distinct group characterized by differentiated cells and tissues. Metazoans include all animal species, ranging from simple sponges to highly complex mammals. They play diverse roles in ecosystems and have complex life cycles. + + + + Metazoa + Metazoa + + + + Method + A general concept referring to a systematic procedure or technique used to accomplish a task or achieve a result in a scientific or experimental setting. + + + + Method + Method to identify the details of the bacteria and it's related property + + + + Method + Method + + + + MicrobialPhenotype + The observable traits and characteristics of microorganisms, including cell structure, colony appearance, motility, and the ability to form spores. + + + + MicrobialPhenotype + Microbial Phenotype + + + + MicrobialPhenotype + MicrobialPhenotype + + + + Microbiome + A community of microorganisms living in a particular environment, such as the human gut, soil, or marine ecosystems. + + + + Microbiome + Microbiome + + + + Microorganism + A broad class encompassing microscopic organisms that can be single-celled or multicellular. Microorganisms include bacteria, archaea, fungi, and protists. They play a crucial role in ecosystems, health, and biotechnology. + + + + Microorganism + Microorganism + + + + MinimumPH + Minimum pH + + + + MinimumSalinity + The lowest concentration of salt that an organism can tolerate for survival or growth. Below this threshold, biological functions may be impaired. + + + + MinimumSalinity + Minimum Salinity + + + + MinimumTemperature + The lowest temperature at which an organism can survive or remain active. Below this temperature, cellular processes slow down or cease, affecting the organism’s growth and survival. + + + + MinimumTemperature + Minimum Temperature + + + + MolecularProperty + A measurable characteristic of a molecule, such as its chemical structure, stability, molecular weight, or behavior in chemical reactions. Molecular properties are fundamental for understanding chemical and biological function. + + + + MolecularProperty + Molecular Property + + + + MolecularWeight + The total mass of a molecule, calculated as the sum of the atomic masses of its constituent atoms. Molecular weight is a critical parameter in understanding molecular interactions and reactions. + + + + MolecularWeight + The total mass of a molecule, typically expressed in Daltons (Da) or atomic mass units (amu). Molecular weight is crucial for understanding molecular behavior in biochemical and physical processes. + + + + MolecularWeight + Molecular Weight + + + + MoleculeIdentifier + A general category for identifiers that refer to specific molecules in chemical and biological databases. + + + + MoleculeIdentifier + Molecule Identifier + + + + MotilityPathway + A biochemical pathway involved in the processes that allow organisms or cells to move, often through mechanisms such as flagella, cilia, or muscle contraction. + + + + MotilityPathway + Motility Pathway + + + + Mucus + Mucus + + + + Multi + Multi + + + + MulticelluarOrganism + Organisms composed of multiple cells that form specialized tissues and organs. Multicellular organisms include plants, animals, and fungi, and they display a complex organization that allows for the division of labor between cells. + + + + MulticelluarOrganism + Multicelluar Organism + + + + Mutation + A change in the genetic material of an organism that can result in different traits or characteristics. Mutations can occur naturally or be induced and can have various impacts on organisms. + + + + Mutation + Mutation + + + + NCBIGeneID + An identifier used by the National Center for Biotechnology Information (NCBI) to uniquely refer to a gene. + + + + NCBIGeneID + NCBIGeneID + + + + NCBIGenomeAccession + A unique identifier assigned to a genome sequence in the NCBI database, used for retrieval and reference. + + + + NCBIGenomeAccession + NCBIGenome Accession + + + + NitrogenSource + A biological role in which a substance provides nitrogen, often necessary for the synthesis of amino acids, nucleic acids, and other vital compounds in organisms. Examples include ammonia, nitrates, and nitrogen gas. + + + + NitrogenSource + Nitrogen Source + + + + NucleotideMetabolism + A metabolic pathway involved in the synthesis and degradation of nucleotides, the building blocks of DNA and RNA, essential for cell division and genetic information transmission. + + + + NucleotideMetabolism + Nucleotide Metabolism + + + + NucleotideSequence + A sequence of nucleotides (adenine, thymine, cytosine, guanine in DNA; adenine, uracil, cytosine, guanine in RNA) that carries genetic information. Nucleotide sequences form the basis of DNA and RNA structures. + + + + NucleotideSequence + Nucleotide Sequence + + + + NutritionType + The classification of an organism based on how it obtains its nutrients, such as autotrophic (producing its own food) or heterotrophic (obtaining food from external sources). + + + + NutritionType + Nutrition Type + + + + OBO + A file format used for representing ontologies in a structured format. OBO (Open Biological and Biomedical Ontology) is widely used in bioinformatics for sharing and curating ontologies. + + + + OBO + OBO + + + + OpenAlexID + An identifier used in the OpenAlex database for tracking scholarly works and academic entities. + + + + OpenAlexID + Open AlexID + + + + OptimumPH + Optimum pH + + + + OptimumSalinity + The salinity range that supports the most efficient growth and reproduction of an organism, representing ideal environmental conditions for biological activity. + + + + OptimumSalinity + Optimum Salinity + + + + OptimumTemperature + The temperature range at which an organism exhibits the most efficient growth and biological activity. This is typically the mid-range temperature between the maximum and minimum limits for growth. + + + + OptimumTemperature + Optimum Temperature + + + + Order + A taxonomic rank used to group families with shared traits, placed below class and above family. + + + + Order + Order + + + + Organ + Organ + + + + OrganicCompound + Compounds that contain carbon atoms bonded to hydrogen and often other elements like oxygen, nitrogen, or sulfur. Organic compounds are the basis of life on Earth and are essential in biochemistry, pharmaceuticals, and materials science. + + + + OrganicCompound + Organic Compound + + + + OrganismGroup + A classification of organisms based on shared characteristics, such as oxygen requirements, gram staining, or genetic modifications. + + + + OrganismGroup + Organism Group + + + + OrganismIdentifier + A general identifier used to refer to specific organisms or strains in biological databases. + + + + OrganismIdentifier + Organism Identifier + + + + Origin + A general concept referring to the source or place from which a biological specimen, strain, or sample was derived. This includes information about the isolation procedure, host, and location of origin. + + + + Origin + Origin + + + + OxidationStability + The resistance of a substance to oxidation, a chemical process in which it loses electrons. Oxidation stability is important for determining the shelf-life and reactivity of compounds, especially in organic chemistry. + + + + OxidationStability + Oxidation Stability + + + + Oxidoreductases + Enzymes that catalyze oxidation-reduction (redox) reactions, transferring electrons between molecules. These enzymes are vital for energy production and metabolic processes such as respiration. + + + + Oxidoreductases + Oxidoreductases + + + + OxygenTolerance + The ability of an organism to survive and grow in the presence or absence of oxygen, ranging from obligate aerobes to obligate anaerobes, as well as facultative anaerobes. + + + + OxygenTolerance + Oxygen Tolerance + + + + OxygenTolerance + http://purl.jp/bio/10/mpo#MPO_04001 + + + + PDB + PDB + + + + PDB-ID + A unique identifier used by the Protein Data Bank (PDB) to refer to a specific protein structure. + + + + Parasite + An organism that lives on or inside a host organism and benefits at the host’s expense, often causing harm or disease. + + + + Parasite + Parasite + + + + Pathogenicity + Describes the ability of an organism to cause disease in a host organism, varying in severity and specificity to different hosts. + + + + Pathogenicity + Pathogenicity + + + + Phenotype + The observable characteristics or traits of an organism, which result from the interaction of its genotype with the environment. Phenotypes can include metabolic, morphological, and behavioral traits. + + + + Phenotype + Phenotype + + + + Phylum + A taxonomic rank used to classify organisms based on major body plans or organizational characteristics, placed below kingdom and above class. + + + + Phylum + Phylum + + + + PhysicalParameter + A measurable characteristic that defines the physical conditions or properties of a system or environment, such as temperature, light, pressure, and salinity. + + + + PhysicalParameter + Physical Parameter + + + + PlantPathogenicity + The ability of an organism to cause disease in plants, leading to agricultural damage and economic losses. + + + + PlantPathogenicity + Plant Pathogenicity + + + + Precision + A measure of the exactness or reproducibility of a result or measurement, often used in scientific experiments and data analysis to ensure accuracy and reliability. + + + + Precision + Precision + + + + Pressure + The force exerted per unit area by gases or liquids on surfaces. Pressure plays a crucial role in physical and biological processes, influencing gas exchange and structural integrity of cells and organisms. + + + + Pressure + Pressure + + + + Process + A sequence of events or actions carried out by biological or chemical mechanisms, resulting in a specific outcome or transformation within an organism or system. + + + + Process + Process + + + + Product + The final chemical compound or substance that results from a chemical reaction. Products are the outcomes of metabolic or synthetic processes and can be intermediates in further reactions. + + + + Product + Product + + + + Prokaryotes + Organisms that lack a defined nucleus and other membrane-bound organelles. Prokaryotes include bacteria and archaea, which are known for their diverse metabolic pathways and roles in the environment. + + + + Prokaryotes + Prokaryotes + + + + PropertyOrAttribute + A general concept referring to measurable or observable characteristics of an entity, such as physical properties, biological attributes, or other traits used for analysis and classification. + + + + PropertyOrAttribute + Property or Attribute + + + + Protein + A complex macromolecule composed of one or more chains of amino acids. Proteins perform a wide range of functions in organisms, including catalyzing metabolic reactions, providing structural support, and regulating gene expression. + + + + Protein + Protein + + + + ProteinIdentifier + A unique identifier for a specific protein sequence or structure in a biological database. + + + + ProteinIdentifier + Protein Identifier + + + + Protozoa + A diverse group of unicellular eukaryotic organisms, often considered animal-like due to their ability to move and consume organic material. Protozoa are found in diverse environments and can be free-living or parasitic. + + + + Protozoa + Protozoa + + + + PubChem + Pub Chem + + + + PubChem-ID + A unique identifier used by the PubChem database to track small molecules and their biological activities. + + + + PubmedID + A unique identifier for articles in the PubMed database, which contains references and abstracts on life sciences and biomedical topics. + + + + PubmedID + PubmedID + + + + Purification + The process of isolating a specific molecule or substance from a mixture, removing contaminants and unwanted substances, often to achieve a high degree of purity for experimental or industrial use. + + + + Purification + Purification + + + + RDF + A framework for representing information about resources in the web, where the data is modeled in triples. RDF (Resource Description Framework) is used in semantic web technologies for linking and querying data. + + + + RDF + RDF + + + + RNASequence + A sequence of nucleotides in RNA that plays various roles in gene expression and regulation. RNA sequences include mRNA, rRNA, tRNA, and other types of RNA involved in cellular processes. + + + + RNASequence + RNASequence + + + + Rate + A property or attribute that describes the speed or frequency at which a process occurs, such as growth, reaction, or survival rates. + + + + Rate + Rate + + + + ReactionRate + The speed at which a chemical or biochemical reaction occurs, often influenced by factors such as temperature, concentration, and catalyst presence. + + + + ReactionRate + Reaction Rate + + + + Record + A documented or stored piece of information or data that is maintained for reference or analysis. Records can take many forms, including datasets, literature, and references. + + + + Record + Record + + + + Reference + A citation or mention of a source that provides support, evidence, or additional information for a particular statement or finding. References are commonly used in academic and scientific work to attribute credit to previous research. + + + + Reference + Reference + + + + RegulatoryPathway + A biochemical pathway that regulates the activity of enzymes, genes, or other cellular processes, ensuring proper function and response to internal or external stimuli. + + + + RegulatoryPathway + Regulatory Pathway + + + + Riboprotein + A complex formed by the association of proteins and ribonucleic acids (RNAs), often involved in protein synthesis. Riboproteins are a key component of the ribosome and other ribonucleoprotein complexes. + + + + Riboprotein + Riboprotein + + + + RiskAssessment + A systematic process used to identify, evaluate, and estimate the potential risks to health, safety, environment, or assets. Risk assessments help in decision-making by determining the likelihood and impact of adverse events and suggesting mitigation strategies. + + + + RiskAssessment + Risk Assessment + + + + SMILES + A text-based representation of a molecule's structure, using a line notation to describe the arrangement of atoms and bonds. + + + + SMILES + SMILES + + + + SSU + The rRNA component of the small subunit of the ribosome, responsible for decoding the mRNA sequence during protein synthesis. + + + + SSU + SSU + + + + Salinity + The concentration of salts in a given environment, typically expressed in parts per thousand (ppt) or percent. Salinity is a critical factor in determining the survival and growth of organisms in aquatic ecosystems. + + + + Salinity + Salinity + + + + Salt + An ionic compound formed by the neutralization reaction between an acid and a base. Salts consist of a cation (positive ion) and an anion (negative ion) and are essential in biological systems, chemistry, and industrial applications. Sodium chloride (NaCl) is a common example. + + + + Salt + Salt + + + + SaltTolerance + The ability of an organism to tolerate and thrive in environments with varying concentrations of salt, ranging from non-halophiles to extreme halophiles. + + + + SaltTolerance + Salt Tolerance + + + + Sea + A large saline body of water that connects to the ocean and provides a habitat for marine life. Seas play a significant role in global ecosystems and can support a wide diversity of organisms. + + + + Sea + Sea + + + + SecondaryMetaboliteBiosynthesis + A biochemical pathway involved in the production of secondary metabolites, compounds that are not directly involved in growth or reproduction but play roles in defense, competition, or signaling in microorganisms, plants, and animals. + + + + SecondaryMetaboliteBiosynthesis + Secondary Metabolite Biosynthesis + + + + SequenceFeature + A defined region within a nucleotide or protein sequence that has functional or structural significance, such as exons, promoters, binding sites, or motifs. + + + + SequenceFeature + Sequence Feature + + + + Serum + Serum + + + + Shape + The geometric form or outline of an object or organism, which can vary based on its structure, function, or environmental influences. + + + + Shape + Shape + + + + SignalingPathway + A sequence of molecular events initiated by a signal (e.g., a hormone, neurotransmitter, or environmental stimulus) that triggers a specific cellular response, such as growth, division, or metabolism. + + + + SignalingPathway + Signaling Pathway + + + + Size + The overall dimensions or magnitude of an object or organism, often measured in terms of height, length, or volume. + + + + Size + Size + + + + Soil + A terrestrial environment composed of minerals, organic matter, water, and air. Soil is critical for plant growth and acts as a habitat for microorganisms and other life forms. + + + + Soil + Soil + + + + Species + The basic unit of biological classification, representing a group of organisms capable of interbreeding and producing fertile offspring. + + + + Species + Species + + + + Speed + The rate at which an object or organism moves, often expressed as distance traveled per unit of time (e.g., meters per second). + + + + Speed + Speed + + + + SporeFormation + The ability of certain microorganisms to form spores, a resistant structure that allows survival in adverse conditions. Spore formation is a significant trait for microbial classification and survival strategies. + + + + SporeFormation + Spore Formation + + + + Stability + A property that describes how resistant a molecule, compound, or material is to changes or degradation over time, under various environmental or chemical conditions. + + + + Stability + Stability + + + + Strain + A genetic variant or subtype of a microorganism (e.g., bacteria, virus, or fungus). Strains are distinguished by differences in their genetic material, often exhibiting unique traits that can be important for research, medicine, and industrial applications. + + + + Strain + Strain + + + + StrainDesignation + A name or label assigned to a microbial strain, often reflecting its source or notable characteristics. + + + + StrainDesignation + Strain Designation + + + + StrainInfo + StrainInfo + + + + StrainInfo-ID + An identifier used in the StrainInfo database to uniquely refer to a specific microbial strain. + + + + StrainNumber + A unique number or identifier assigned to a specific strain of microorganism, used for identification and reference. + + + + StrainNumber + Strain Number + + + + StructuralProtein + Proteins that provide mechanical support and shape to cells and tissues. Examples include collagen in connective tissue and keratin in hair and nails. + + + + StructuralProtein + Structural Protein + + + + Subphylum + A rank below the phylum, used to classify organisms that share certain characteristics distinct from other members of the same phylum. + + + + Subphylum + Subphylum + + + + Substrate + A substance on which an enzyme acts during a biochemical reaction, usually being transformed into one or more products. + + + + Substrate + Substrate + + + + Superphylum + A taxonomic rank used to group together several phyla with common evolutionary traits, placed above phylum. + + + + Superphylum + Superphylum + + + + SurvivalRate + The proportion of individuals in a population that survive over a specified period, often used in ecological and medical studies to assess the effects of environmental conditions or treatments. + + + + SurvivalRate + Survival Rate + + + + Symbiont + An organism that lives in a symbiotic relationship with another organism, where both may benefit, or one may benefit without harming the other. + + + + Symbiont + Symbiont + + + + TaxonomicRank + A hierarchical level in the classification of organisms, used in biological taxonomy to organize living things based on shared characteristics. + + + + TaxonomicRank + Taxonomic Rank + + + + Temperature + Describes the degree of heat in an environment or cultivation, which can influence biological processes, metabolic rates, and organism survival. Temperature is a key factor in defining the suitable living conditions for many organisms. + + + + Temperature + Temperature + + + + TemperatureStability + The resistance of a substance or molecule to changes in structure or function due to fluctuations in temperature. Temperature stability is critical for enzymes, proteins, and other biomolecules. + + + + TemperatureStability + Temperature Stability + + + + Time + A property that refers to the duration or specific point when an event occurs. Time is fundamental in measuring processes such as growth, reactions, and changes in biological or chemical systems. + + + + Time + Time + + + + Tissue + Tissue + + + + TranscriptionFactor + Proteins that bind to specific DNA sequences and regulate the transcription of genetic information from DNA to mRNA. Transcription factors play a crucial role in gene expression, allowing cells to respond to internal and external signals. + + + + TranscriptionFactor + Transcription Factor + + + + Transferases + Enzymes that catalyze the transfer of functional groups (e.g., phosphate, methyl, or acyl groups) from one molecule to another. Transferases are involved in numerous metabolic processes, including phosphorylation and glycosylation. + + + + Transferases + Transferases + + + + Translocases + A class of enzymes that assist in the movement of molecules across membranes, such as proteins or nucleic acids. These enzymes are essential for transporting substances into and out of cells or organelles. + + + + Translocases + Translocases + + + + TransportProcess + The movement of molecules, ions, or other substances across cell membranes or within an organism, which is essential for maintaining homeostasis, nutrient uptake, and waste removal. + + + + TransportProcess + Transport Process + + + + TurnoverNumber + The number of substrate molecules converted to product per enzyme molecule per second, under optimal conditions. The turnover number is a measure of enzyme efficiency and catalytic activity. + + + + TurnoverNumber + Turnover Number + + + + TypeStrain + A strain of a microorganism that is used as the reference strain for defining a species. Type strains are essential for taxonomic classification. + + + + TypeStrain + Type Strain + + + + UncategorizedTaxon + A placeholder category for organisms that have not been definitively classified into a specific taxonomic rank. + + + + UncategorizedTaxon + Uncategorized Taxon + + + + UnicellularAlgae + Photosynthetic eukaryotic microorganisms found in aquatic environments. These algae are important for their role in producing oxygen and serving as the base of many aquatic food chains. + + + + UnicellularAlgae + Unicellular Algae + + + + UnicellularFungi + Fungi that exist as a single cell, such as yeast. These organisms are often involved in fermentation processes and can also be pathogens or symbiotic organisms. + + + + UnicellularFungi + Unicellular Fungi + + + + Uniprot + Uniprot + + + + Uniprot-ID + An identifier used by the UniProt database to uniquely refer to a specific protein sequence and its related data. + + + + UnitOfMeasure + A standardized quantity used to express and measure physical, chemical, or biological attributes, such as meters, liters, grams, or moles. + + + + UnitOfMeasure + Unit OfMeasure + + + + Urine + Urine + + + + Value + A numerical or qualitative representation of a property or attribute, often used to quantify characteristics such as size, concentration, or rate. + + + + Value + Value + + + + Volume + The amount of three-dimensional space occupied by a substance or object, typically measured in liters or cubic meters. + + + + Volume + Volume + + + + Weight + The force exerted by gravity on an object, often expressed in grams, kilograms, or other units of mass. + + + + Weight + Weight + + + + Width + A measure of the distance from one side of an object to the other, typically in a dimension perpendicular to its length. + + + + Width + Width + + + + XLSX + A spreadsheet file format used by Microsoft Excel, typically storing tabular data with rows and columns, which can include text, numbers, and formulas. + + + + XLSX + XLSX + + + + XML + An extensible markup language used for encoding documents in a format that is both human-readable and machine-readable. XML is used for data interchange between systems. + + + + XML + XML + + + + YAML + A human-readable data serialization format commonly used for configuration files and data exchange between applications. + + + + YAML + YAML + + + + describesStrain + A property indicating a relationship where a particular entity (e.g., a document or dataset) provides a description or detailed information about a microbial strain. + + + + describesStrain + describes strain + + + + fromSequenceDB + A property indicating the sequence database from which the genetic information is sourced, such as GenBank, ENA, or DDBJ. + + + + fromSequenceDB + from sequence database + + + + gcMethod + A method referring to Gas Chromatography (GC), a technique used to separate and analyze compounds that can be vaporized without decomposition. It is commonly used in chemistry for qualitative and quantitative analysis. + + + + gcMethod + gc Method + + + + growthObserved + A property indicating whether growth was observed under specific conditions, such as the presence or absence of nutrients, media, or environmental factors. + + + + growthObserved + growth observed + + + + hasAbility + A property representing a relationship where an entity possesses a certain ability or capability, such as performing a function or action. + + + + hasAbility + has ability + + + + hasActivity + A property indicating a relationship where an entity participates in or exhibits a certain activity, typically referring to biological, chemical, or physical processes. + + + + hasActivity + has activity + + + + hasAssemblyLevel + A property linking an entity to the assembly level of the genome, such as complete, draft, or scaffold level. + + + + hasAssemblyLevel + has assembly level + + + + hasBacDiveID + A property linking an entity to the BacDive identifier, a unique number used to reference strains in the BacDive database. + + + + hasBacDiveID + has BacDive ID + + + + hasBibliographicInformation + A property that links an entity to bibliographic information, such as titles, authors, or publication details, providing reference metadata for documents or literature. + + + + hasBibliographicInformation + has bibliographic information + + + + hasBiosafetyLevel + A property linking an entity to its biosafety level, which represents the containment protocols and safety measures required to handle biological materials, typically classified from BSL-1 to BSL-4. + + + + hasBiosafetyLevel + has biosafety level + + + + hasBookTitle + A property that links bibliographic information to the title of a book. It specifies the name of the book being referenced. + + + + hasBookTitle + has book title + + + + hasCatalogueID + A property linking an entity to a specific catalogue identifier, used for referencing the entity in a biological resource center or database catalogue. + + + + hasCatalogueID + has catalogue ID + + + + hasCatalogueInformation + A property linking an entity to its catalogue information, which includes identifying and institutional details from a reference collection or database. + + + + hasCatalogueInformation + has catalogue information + + + + hasCatalogueInstitution + A property linking an entity to the institution responsible for the catalogue entry, typically referring to a biological resource center or repository that holds or maintains the sample. + + + + hasCatalogueInstitution + has catalogue institution + + + + hasClass + A property linking an entity to the taxonomic class it belongs to, which is a rank in the hierarchy between phylum and order. + + + + hasClass + has class + + + + hasColonyColor + A property linking an entity to the color of a microbial colony, which can be an important phenotypic characteristic for identification and classification. + + + + hasColonyColor + has colony color + + + + hasColonyLength + A property linking an entity to the measured length of a microbial colony, often used to describe its size and physical dimensions. + + + + hasColonyLength + has colony length + + + + hasColonyLengthRangeEnd + A property indicating the maximum length of a microbial colony within a specified range, providing a boundary for the possible size of the colony. + + + + hasColonyLengthRangeEnd + has colony length range end + + + + hasColonyLengthRangeStart + A property indicating the minimum length of a microbial colony within a specified range, providing a boundary for the possible size of the colony. + + + + hasColonyLengthRangeStart + has colony length range start + + + + hasColonyMorphologyInformation + A property linking an entity to information about the morphology of a microbial colony, including its physical characteristics such as shape, color, size, and structure. + + + + hasColonyMorphologyInformation + has colony morphology information + + + + hasColonyShape + A property linking an entity to the shape of a microbial colony, which is a key feature in microbial identification and classification. + + + + hasColonyShape + has colony shape + + + + hasColonyWidth + A property linking an entity to the measured width of a microbial colony, often used to describe its size and physical dimensions. + + + + hasColonyWidth + has colony width + + + + hasColonyWidthRangeEnd + A property indicating the maximum width of a microbial colony within a specified range, providing a boundary for the possible size of the colony. + + + + hasColonyWidthRangeEnd + has colony width range end + + + + hasColonyWidthRangeStart + A property indicating the minimum width of a microbial colony within a specified range, providing a boundary for the possible size of the colony. + + + + hasColonyWidthRangeStart + has colony width range start + + + + hasCountry + A property linking an entity to a specific country, indicating the nation where the entity is located or was collected from. + + + + hasCountry + has country + + + + hasDesignation + A property linking an entity to the strain's official designation or label, often reflecting its origin or notable characteristics. + + + + hasDesignation + has designation + + + + hasDocumentType + A property that links bibliographic information to the type of document, such as a journal article, book, or thesis. + + + + hasDocumentType + has document type + + + + hasDomain + A property linking an entity to its taxonomic domain, the highest rank in the biological classification system, such as Bacteria, Archaea, or Eukarya. + + + + hasDomain + has domain + + + + hasECNumber + A property linking an entity to the Enzyme Commission (EC) number of an enzyme, which is a numerical classification scheme for enzymes based on the reactions they catalyze. + + + + hasECNumber + has EC number + + + + hasEditor + A property linking bibliographic information to the editor(s) of a document, such as a book or journal. The editor is responsible for overseeing the content. + + + + hasEditor + has editor + + + + hasEnzyme + A property linking an entity to an enzyme, typically representing a relationship where the enzyme is involved in a biological or biochemical process. + + + + hasEnzyme + has enzyme + + + + hasFamily + A property linking an entity to its taxonomic family, a rank in the classification hierarchy between order and genus. + + + + hasFamily + has family + + + + hasFlagellumArrangement + A property linking an entity to the arrangement of flagella, such as polar, peritrichous, or lophotrichous, which is important for motility classification. + + + + hasFlagellumArrangement + has flagellum arrangement + + + + hasGCContentRangeEnd + A property indicating the maximum percentage of guanine and cytosine bases in a given DNA sequence range, providing an upper boundary for the GC content. + + + + hasGCContentRangeEnd + has GC content range end + + + + hasGCContentRangeStart + A property indicating the minimum percentage of guanine and cytosine bases in a given DNA sequence range, providing a lower boundary for the GC content. + + + + hasGCContentRangeStart + has GC content range start + + + + hasGCInformation + A property linking an entity to GC content information, which represents the proportion of guanine (G) and cytosine (C) bases in a DNA sequence, commonly used to assess DNA stability and characteristics. + + + + hasGCInformation + has GC information + + + + hasGCMethod + A property linking an entity to the method used for determining the GC content of a DNA sequence, such as thermal denaturation or chromatography-based techniques. + + + + hasGCMethod + has GC method + + + + hasGenus + A property linking an entity to its taxonomic genus, a rank in the classification hierarchy just above species. + + + + hasGenus + has genus + + + + hasGramStain + A property linking an entity to its Gram stain result, which indicates whether it is Gram-positive or Gram-negative based on the structure of its cell wall. + + + + hasGramStain + has Gram stain + + + + hasGrowthInformation + A property linking an entity to information about the growth conditions and observations for a microorganism, including media, temperature, pH, and oxygen tolerance. + + + + hasGrowthInformation + has growth information + + + + hasHemolysisAbility + A property indicating whether an organism has the ability to cause hemolysis, the breakdown of red blood cells, in its environment. + + + + hasHemolysisAbility + has hemolysis ability + + + + hasHemolysisInformation + A property linking an entity to information about the hemolysis characteristics of an organism, such as its ability to lyse red blood cells. + + + + hasHemolysisInformation + has hemolysis information + + + + hasHemolysisType + A property linking an entity to the specific type of hemolysis observed, such as alpha, beta, or gamma hemolysis, based on the degree of red blood cell destruction. + + + + hasHemolysisType + has hemolysis type + + + + hasISBN + A property linking bibliographic information to the ISBN (International Standard Book Number) of a book, which is a unique identifier for published works. + + + + hasISBN + has ISBN + + + + hasIncubationInformation + A property linking an entity to information about the incubation conditions, such as the duration or environment required for microbial growth or reactions to take place. + + + + hasIncubationInformation + has incubation information + + + + hasIncubationPeriod + A property linking an entity to the specific period of time an organism or sample is incubated under controlled conditions. + + + + hasIncubationPeriod + has incubation period + + + + hasIncubationPeriodRangeEnd + A property indicating the maximum duration of the incubation period within a specified range. + + + + hasIncubationPeriodRangeEnd + has incubation period range end + + + + hasIncubationPeriodRangeStart + A property indicating the minimum duration of the incubation period within a specified range. + + + + hasIncubationPeriodRangeStart + has incubation period range start + + + + hasJournalAbbreviation + A property linking bibliographic information to the abbreviated form of a journal's name, often used in citations for space-saving purposes. + + + + hasJournalAbbreviation + has journal abbreviation + + + + hasJournalFullName + A property linking bibliographic information to the full name of a journal, used to provide the complete title in references and citations. + + + + hasJournalFullName + has journal full name + + + + hasLPSNID + A property linking an entity to the LPSN (List of Prokaryotic Names with Standing in Nomenclature) identifier for a strain, used for taxonomic classification and reference. + + + + hasLPSNID + has LPSN ID + + + + hasLatitude + A property linking an entity to its latitude coordinate, representing its north-south position on the Earth's surface. + + + + hasLatitude + has latitude + + + + hasLength + A property linking an entity to the measured length of a cell or organism, providing important information about its size and morphology. + + + + hasLength + has length + + + + hasLengthRangeEnd + A property indicating the maximum length within a specific range for a cell or organism, used to define its size variability. + + + + hasLengthRangeEnd + has length range end + + + + hasLengthRangeStart + A property indicating the minimum length within a specific range for a cell or organism, used to define its size variability. + + + + hasLengthRangeStart + has length range start + + + + hasLengthUnit + A property linking an entity to the unit of measurement used for length, such as micrometers (µm) or millimeters (mm). + + + + hasLengthUnit + has length unit + + + + hasLink + A property linking an entity to a specific URL or reference that provides further information or external resources related to the entity. + + + + hasLink + has link + + + + hasLocation + A property linking an entity to its physical or geographical location, such as a place or region where it is found or originated from. + + + + hasLocation + has location + + + + hasLongitude + A property linking an entity to its longitude coordinate, representing its east-west position on the Earth's surface. + + + + hasLongitude + has longitude + + + + hasMediaDiveID + A property linking an entity to a unique identifier from the MediaDive database, representing the specific media used in growth experiments or cultivation. + + + + hasMediaDiveID + has MediaDive ID + + + + hasMediaLink + A property that links a strain or organism to cultivation media, representing the relationship between a biological entity and the culture medium used for its growth or study. + + + + hasMediaLink + has media link + + + + hasMediumComposition + A property linking an entity to the composition of the growth medium, including nutrients, chemicals, and any other ingredients required for microbial growth. + + + + hasMediumComposition + has medium composition + + + + hasMediumGrowth + A property linking an entity to the type of growth observed in a specific medium, which may vary based on nutrient availability and environmental conditions. + + + + hasMediumGrowth + has medium growth + + + + hasOrder + A property linking an entity to its taxonomic order, a rank in the classification hierarchy between class and family. + + + + hasOrder + has order + + + + hasOxygenTolerance + A property indicating the oxygen tolerance of a microorganism, such as whether it is aerobic, anaerobic, or facultative anaerobe, based on growth conditions. + + + + hasOxygenTolerance + has oxygen tolerance + + + + hasPHRangeEnd + A property indicating the maximum pH value within a range where a microorganism can grow or survive. + + + + hasPHRangeEnd + has pH range end + + + + hasPHRangeStart + A property indicating the minimum pH value within a range where a microorganism can grow or survive. + + + + hasPHRangeStart + has pH range start + + + + hasPHRangeType + A property linking an entity to the type of pH range under which a microorganism can grow, such as optimum, minimum, or maximum pH conditions. + + + + hasPHRangeType + has pH range type + + + + hasPageRange + A property linking bibliographic information to the page range of an article or document, specifying the start and end pages in a publication. + + + + hasPageRange + has page range + + + + hasPhenotypeInformation + A property linking an entity to information about its phenotype, which includes observable characteristics such as morphology, motility, and staining properties. + + + + hasPhenotypeInformation + has phenotype information + + + + hasPhylum + A property linking an entity to its taxonomic phylum, a rank in the classification hierarchy between domain and class. + + + + hasPhylum + has phylum + + + + hasPigmentColor + A property that links an entity to the color of a pigment produced by an organism, such as red, yellow, or green. + + + + hasPigmentColor + has pigment color + + + + hasPigmentInformation + A property linking an entity to information about the pigments produced by an organism, including color, name, and production levels. + + + + hasPigmentInformation + has pigment information + + + + hasPigmentName + A property linking an entity to the specific name of a pigment produced by an organism, such as carotenoid, melanin, or chlorophyll. + + + + hasPigmentName + has pigment name + + + + hasPigmentProduction + A property indicating the level or quantity of pigment production in an organism, which may be quantified or described qualitatively. + + + + hasPigmentProduction + has pigment production + + + + hasPubMedID + A property linking an entity to its unique identifier in the PubMed database, which is used to reference scientific literature in the field of life sciences and biomedical research. + + + + hasPubMedID + has PubMed ID + + + + hasPublisher + A property linking bibliographic information to the publisher of a document, which is the organization or company responsible for printing or distributing the work. + + + + hasPublisher + has publisher + + + + hasReference + A property that relates an entity (e.g., strain, dataset, or publication) to a reference or citation that provides supporting information or evidence. + + + + hasReference + has reference + + + + hasSaltConcentration + A property linking an entity to the specific salt concentration in a medium or environment where the organism is grown or studied, often measured in parts per thousand (ppt) or percent. + + + + hasSaltConcentration + has salt concentration + + + + hasSaltConcentrationRangeEnd + A property indicating the maximum salt concentration within a specified range in which an organism can survive or grow. + + + + hasSaltConcentrationRangeEnd + has salt concentration range end + + + + hasSaltConcentrationRangeStart + A property indicating the minimum salt concentration within a specified range in which an organism can survive or grow. + + + + hasSaltConcentrationRangeStart + has salt concentration range start + + + + hasSaltConcentrationUnit + A property linking an entity to the unit of measurement used for salt concentration, such as parts per thousand (ppt) or percent (%). + + + + hasSaltConcentrationUnit + has salt concentration unit + + + + hasSaltInformation + A property linking an entity to information about its salt tolerance, including concentration, type, and the conditions under which the organism survives or thrives in salty environments. + + + + hasSaltInformation + has salt information + + + + hasSaltType + A property linking an entity to the specific type of salt present in the medium or environment, such as sodium chloride (NaCl) or magnesium sulfate (MgSO4). + + + + hasSaltType + has salt type + + + + hasSequenceAccession + A property linking an entity to the unique sequence accession number used in databases to reference the genetic sequence. + + + + hasSequenceAccession + has sequence accession + + + + hasSequenceInformation + A property linking an entity to information about its genetic sequence, including database sources, accession numbers, and assembly level. + + + + hasSequenceInformation + has sequence information + + + + hasSequenceLength + A property indicating the length of a genetic sequence, typically measured in base pairs (bp). + + + + hasSequenceLength + has sequence length + + + + hasSpecies + A property linking an entity to its species, the basic unit of classification that groups organisms capable of interbreeding. + + + + hasSpecies + has species + + + + hasSpeciesEpithet + A property linking an entity to its species epithet, the second part of a binomial scientific name that identifies the species within a genus. + + + + hasSpeciesEpithet + has species epithet + + + + hasSporeType + A property linking an entity to the specific type of spores produced by a microorganism, such as endospores or exospores. + + + + hasSporeType + has spore type + + + + hasStrainNames + A property linking an entity to the names and designations used to identify microbial strains, including official and alternative names. + + + + hasStrainNames + has strain names + + + + hasStrainNumber + A property linking an entity to the strain number used in collections or databases, which uniquely identifies the strain. + + + + hasStrainNumber + has strain number + + + + hasSubspeciesEpithet + A property linking an entity to its subspecies epithet, used to identify an additional taxonomic rank below species when subspecies distinctions exist. + + + + hasSubspeciesEpithet + has subspecies epithet + + + + hasTaxID + A property linking an entity to its unique taxonomic identifier (TaxID) used in biological databases to classify organisms. + + + + hasTaxID + has tax ID + + + + hasTaxonomicRank + A property linking an entity to its taxonomic rank, which determines its hierarchical position in the biological classification system. + + + + hasTaxonomicRank + has taxonomic rank + + + + hasTemperatureRange + A property linking an entity to the temperature range in which a microorganism can grow, including minimum, optimum, and maximum values. + + + + hasTemperatureRange + has temperature range + + + + hasTemperatureRangeEnd + A property indicating the maximum temperature at which a microorganism can grow or survive within a specific temperature range. + + + + hasTemperatureRangeEnd + has temperature range end + + + + hasTemperatureRangeStart + A property indicating the minimum temperature at which a microorganism can grow or survive within a specific temperature range. + + + + hasTemperatureRangeStart + has temperature range start + + + + hasTestAbility + A property indicating the specific ability or characteristic being tested or assessed in a given biological or chemical test. + + + + hasTestAbility + has test ability + + + + hasTestType + A property linking an entity to the type of test performed, specifying the method or procedure used in the experiment or analysis. + + + + hasTestType + has test type + + + + hasVariant + A property linking an entity to a specific variant, indicating genetic or phenotypic differences from the typical form of a species or strain. + + + + hasVariant + has variant + + + + hasVolume + A property linking bibliographic information to the volume of a journal or series in which an article or document is published. + + + + hasVolume + has volume + + + + hasWidth + A property linking an entity to the measured width of a cell or organism, providing important information about its size and morphology. + + + + hasWidth + has width + + + + hasWidthRangeEnd + A property indicating the maximum width within a specific range for a cell or organism, used to define its size variability. + + + + hasWidthRangeEnd + has width range end + + + + hasWidthRangeStart + A property indicating the minimum width within a specific range for a cell or organism, used to define its size variability. + + + + hasWidthRangeStart + has width range start + + + + hasWidthUnit + A property linking an entity to the unit of measurement used for width, such as micrometers (µm) or millimeters (mm). + + + + hasWidthUnit + has width unit + + + + isAnimalPathogen + A property indicating whether an organism is a pathogen that specifically causes disease in animals. + + + + isAnimalPathogen + is animal pathogen + + + + isHumanPathogen + A property indicating whether an organism is a pathogen that specifically causes disease in humans. + + + + isHumanPathogen + is human pathogen + + + + isMotile + A property indicating whether an organism is capable of movement, typically referring to the presence of structures such as flagella or cilia. + + + + isMotile + is motile + + + + isPathogen + A property indicating whether an organism is a pathogen, capable of causing disease in its host. + + + + isPathogen + is pathogen + + + + isPlantPathogen + A property indicating whether an organism is a pathogen that specifically causes disease in plants. + + + + isPlantPathogen + is plant pathogen + + + + isTypeStrain + A property indicating whether an organism is the type strain, which is the strain upon which the description of a species is based. + + + + isTypeStrain + is type strain + + + + kcat + The catalytic constant (kcat) is a measure of the efficiency of an enzyme in converting substrate molecules to product per unit time, providing insights into enzyme activity and turnover. + + + + kcat + kcat + + + + mRNA + A type of RNA that carries genetic information from DNA to the ribosome, where it is used as a template for protein synthesis. mRNA serves as the intermediary between a gene and its corresponding protein product. + + + + mRNA + mRNA + + + + matchesTaxIDLevel + A property indicating the level at which the TaxID matches the classification, such as genus, species, or family. + + + + matchesTaxIDLevel + matches tax ID level + + + + ncRNA + RNA molecules that do not encode proteins but have important roles in gene regulation, RNA processing, and structural functions. Examples include microRNAs (miRNAs) and long non-coding RNAs (lncRNAs). + + + + ncRNA + ncRNA + + + + pH + A measure of the acidity or alkalinity of an environment, which can affect the biological processes of organisms. pH is critical for enzyme activity, microbial growth, and the solubility of nutrients in an environment. Different organisms thrive at different pH levels, from acidic to neutral to alkaline environments. + + + + pH + pH + + + + pHStability + The ability of a molecule, compound, or material to maintain its structural integrity or functional properties when exposed to different pH levels, which is important for enzymes and other biological molecules. + + + + pHStability + pHStability + + + + providedBy + A property indicating the source or entity that provided the organism, sample, or data, often used to reference contributors or institutions. + + + + providedBy + provided by + + + + rRNA + A type of RNA that forms the structural and functional components of the ribosome, the molecular machine responsible for protein synthesis. + + + + rRNA + rRNA + + + + rRNASequence + The nucleotide sequence that composes ribosomal RNA (rRNA), a key component of ribosomes, which are responsible for protein synthesis in all living cells. + + + + rRNASequence + rRNASequence + + + + refersTo + A property indicating a relationship where one entity (e.g., a document or dataset) refers to or mentions another entity, establishing a link between them. + + + + refersTo + refers to + + + + tRNA + A type of RNA that helps decode mRNA sequences into proteins during translation. Each tRNA molecule carries a specific amino acid to the ribosome and matches it to the corresponding codon in the mRNA through its anticodon region. + + + + tRNA + tRNA + + + + #Archaea + microorganisms which are similar to bacteria in size and simplicity of structure but radically different in molecular organization. + + + + #Bacteria + a member of a large group of unicellular microorganisms which have cell walls but lack organelles and an organized nucleus, including some which can cause disease. + + + + #BiologicalMaterial + a living thing that has (or can develop) the ability to act or function independently. + + + + #Embryophyte + Embryophytes are complex multicellular eukaryotes with specialized reproductive organs. + + + + #Embryophyte + Land Plants + + + + #Eukaryotes + Eukaryotic cells contain membrane bound organelles, such as mitochondria, a nucleus, and chloroplasts. + + + + #Metazoa + Metazoa (also called Animals) are multicellular eukaryotic organisms that form the biological kingdom Animalia + + + + #Microorganism + A unicellular organism, also known as a single-celled organism, is an organism that consists of a single cell. + + + + #MulticelluarOrganism + Multicellular organisms are organisms that consist of more than one cell, in contrast to unicellular organisms. + + + + #Prokaryotes + Prokaryotes lack membrane-bound organelles, such as mitochondria or a nucleus. + + + + #Protozoa + Protozoa are largely defined by their method of locomotion, including flagella, cilia, and pseudopodia. + + + + #UnicellularAlgae + Unicellular algae are plant-like autotrophs and contain chlorophyll. + + + + #UnicellularFungi + Unicellular fungi include the yeasts. Fungi are found in most habitats, although most are found on land. + + + + 16SBacterial + The small subunit rRNA found in bacterial ribosomes, widely used as a molecular marker for identifying and classifying bacteria. + + + + 16SBacterial + 16S (Bacterial) + + + + 16SMitochondrial + The small subunit rRNA found in mitochondrial ribosomes, playing a role in mitochondrial protein synthesis. + + + + 16SMitochondrial + 16S (Mitochondrial) + + + + 16SSequence + The sequence of the 16S ribosomal RNA gene, which is highly conserved among bacteria and archaea. It is widely used for phylogenetic studies and microbial identification. + + + + 16SSequence + 16SSequence + + + + 18S + The small subunit rRNA found in eukaryotic ribosomes, responsible for the accurate translation of mRNA into proteins. + + + + 18S + 18S + + + + 23SBacterial + The large subunit rRNA found in bacterial ribosomes, playing a key role in the catalytic activity of the ribosome. + + + + 23SBacterial + 23S (Bacterial) + + + + 23SMitochondrial + The large subunit rRNA found in mitochondrial ribosomes, distinct from its bacterial counterpart but performing a similar function in protein synthesis within mitochondria. + + + + 23SMitochondrial + 23S (Mitochondrial) + + + + 28S + The large subunit rRNA found in eukaryotic ribosomes, involved in catalyzing peptide bond formation during translation. + + + + 28S + 28S + + + + xsd:string + + + + + + + diff --git a/test/data/ontology_files/epo.owl b/test/data/ontology_files/epo.owl new file mode 100644 index 00000000..19d9756f --- /dev/null +++ b/test/data/ontology_files/epo.owl @@ -0,0 +1,18806 @@ + + + + + + + + + + + + + +]> + + + + + 1.1 + Ferdinand Dhombres + Jean Charlet + Paul Maurice + This is the taxonomic hierarchy of the Ectopic Pregnancy Ontology. This ontology include the vocabulary for ultrasound image description for ectopic pregnancy. +Contact: ferdinand.dhombres@aphp.fr + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CNAMTS - CCAM version 16 applicable au 28/05/2009 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + a pour mesure + + + + + + + + + + + + can visualize + peut visualiser + + + + + + + + + + + + + + + + + + + + hasLocation + est une description de + + + + + + + + + + + is suggested by + est évoqué devant + + + + + + + + + + + est insuffisament explorable par + + + + + + + + + + + + is limited for the assessement of + est insuffisant pour explorer + + + + + + + + + + + hasMorphologicalStatus + Relation entre un état morphologique et un attribut : normal, anormal ou douteux. + + + + + + + + + + + is measure of + Relation entre une mesure par un examen et la structure anatomique mesurée. +Exemple : (longeur de femur à l'échographie) et (femur) + est une mesure de + + + + + + + + + + + suggests + évoque + + + + + + + + + + + has for part + a comme partie + + + + + + + + + + est décrit par + + + + + + + + + + + + + + + + + + + + is a part of + same as the Part Of relation of the FMA + est une partie de + + + + + + + + + requires + est visualisable par + + + + + + + + + + + + + + + + + + + Une relation au sens général du terme entre deux concepts. +Ne devrait pas être utilisé pour des restrictions. + + + + + + + + Une "relation inverse" au sens générale. +Ne devrait pas être utilisé pour des restrictions. + + + + + + + + + + The bounds relation specifies the object(s) whose extent is determined by this boundary concept + bounds + délimite + + + + + + + + + + is cause of + + + + + + + + + + + + + + + + + + + + + + DEFxChangexAbstractObj + + + + + + + + + + + + + + + + + + + + + + + DEFxUnICxStatePhyObj + + + + + + + + + + + defines physical function + has for function + + + + + + + + + + + has attribute + relation between an abstract object and the attribute which is an intrinsic property of this object. + a comme attribut + + + + + + + + + + + has for consequence + a pour conséquence + + + + + + + + + + + + HasContraceptionMethod + has contraception method + + + + + + + + + + + has drug presentation + + + + + + + + + + + has location + a pour localisation + + + + + + + + + has for personal antecedent + has in his/her medical history + a pour antécédent + + + + + + + + + + + + + + + + + + + + has as a prerequisite + a comme pré-requis + + + + + + + + + + + has for risk factor + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + is the consequence of + a pour conséquence + + + + + + + + + + + + is continuous with + est en continuité avec + + + + + + + + + + + is a prerequisite for + est un pré-requis à + + + + + + + + + + + + is a risk factor of + + + + + + + + + + + + + + + + + + is used for + + + + + + + + + + + requires mode + + + + + + + + + + requires route + + + + + + + + + + requires view + + + + + + + + + + shows + + + + + + + + + + Comes directly from OntoMenelas. +Relation between two pathological states, one resulting from a worsening of the other. + worsening of + aggravation de + + + + + + + + + + + + after_state + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Pain can or cannot have an irradiation + has pain irradiation + + + + + + + + + + + + + + + + + abnormal + anormal + + + + + + + + + + absent + + + + + + + + + presence of cardiac activity + + + + + + + + + Type de patient : Age + Type de patient + Type de patient + Age + + + + + + + + + Type de patient + Type de patient + + + + + + + + + PLA + amniocentèse + ponction du liquide amniotique + prélèvement de liquide amniotique + + + + + + + + + CCAM : Amniocentèse sur plusieurs sacs amniotiques, avec guidage échographique. + JPHJ001 + amniocentèses multiples + + + + + + + + + JPHJ002 + CCAM : Amniocentèse sur un sac amniotique unique, avec guidage échographique. + amniocentèse simple + + + + + + + + + + + + + + + + + JPQE001 + CCAM : endoscopie de l'utérus gravide. + amnioscopie + + + + + + + + + + + + + + + + + + + + + + + + + 83464 + cerebellar tonsil + neuraxis tonsil + tonsil of cerebellum + amygdale cérébelleuse + + + + + + + + + FMA definition : +"Immaterial anatomical entity of one less dimension than the anatomical entity it bounds or demarcates from another anatomical entity. Examples: surface of heart, surface of epithelial cell, cervicothoracic plane, supra-orbital notch, costal margin, apex beat, Sylvian point." + anatomical boundary entity + limite anatomique + + + + + + + + + 67552 + FMA definition : +" Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure or two or more adjacent anatomical structures. Examples: nasal cavity, cavity of stomach, pharyngeal recess space, lumen of artery, cavity of serous sac." + anatomical cavity + cavité anatomique + + + + + + + + + Anatomical surface + FMA definition : +"Anatomical boundary entity which has two spatial dimensions. Examples: body surface, epigastrium, precordium, right iliac fossa." + surface anatomique + + + + + + + + + + + + + + + + + Anomalie de la structure anatomique en rapport avec son environnement (position anormale, compression par une structure voisine...) +ex : "cervelet bas situé" + anormal par anomalie externe + anormal par anomalie extrinsèque + + + + + + + + + Anomalie de la structure anatomique elle-même (anomalie de forme, de taille, de structure, ...) +ex : "petit cervelet" + anomalie interne + anomalie intrinsèque + + + + + + + + + Instruments servant à l'examen clinique + + + + + + + + + + + + + + + + + + + + + + + + + appareil de réanimation + + + + + + + + + + + + + + + + + apyrexie + apyrétique + + + + + + + + + different destinations. + is an individual. Can be set in the plural so that one can count them when the are in the plural. + made by man. + Menelas efinition : +"Artificial objects are made in a given purpose, to help perform a function, or solve a task. Hence, artificial objects must be distinguished according to the goal for which they are made. + +Besides, being real objects, an artificial object has necessarily a function and a form. However, while a natural object has not always an essential function, an artificial one is designed for only one essential use. For example, buildings to be safe in them, drugs to care, implement to help medical intervention." + +CG Representation : +[artificial_object: _x] + artificial object + objet artificiel + + + + + + + + + + attribut calculé + attribut calculé en utilisation une combinaison d'autre taux atomique + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + internalised point of view on abstract objects + Attributs s'appliquant à des objets physique + attribit physique + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + kind of abstract objects (physical or intentional) it is an attribute of. + point of view on abstract objects + the point of view does not constitute a reference system. + According to OntoDPN : +" "modifier" according to the Snomed." + +Menelas definition : +"As a concept in the CG sense, an attribute a unary relation, Its logical interpretation, i.e. its denotation, consists of every occurrence of the attribute for what it is an attribute of: e.g. denotation of temperature is the set of temperature of every patient at every time. The graph of the attr relation will be, regarding temperature, {(#123, T(t1, #123))...} + +An attribute characterises a property intrinsic of an object. It is a point of view that is internalised in the object definition. This must be constrasted to with the functional point of view that are external considerations to the object that are not necessarily considered in the object definition." + + +CG Representation : +[attribute: _x]- + (attr)<--[abstract_object] + (val)-->[value]% + attribute + Des attributs. +"Modificateurs" pour la Snomed + attribut + + + + + + + + + auscultation + + + + + + + + + + + + + + + + + + + + + + + + + 61945 + corpus callosum rostrum + rostrum of corpus callosum + bec du corps calleux + rostrum du corps calleux + corpus callosum rostrum + rostrum corporis callosi + rostrum corpus callosi + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CCAM : biopsie du trophoblaste. + +(correspond à deux activités : guidage échographique et biopsie du trophoblaste) + JPHB002 + PVC + biopsie du trophoblaste + prélèvement de villosités choriales + + + + + + + + + FMA definition : +"Anatomical surface which marks a physical discontinuity between two or more anatomical structures or is an interface between an anatomical space and one more anatomical structures. Examples: surface of head, costal surface of lung, luminal surface of epithelium, P-face of plasma membrane." + bona fide anatomical surface + surface de structure anatomique + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 24034 + FMA definition : +"Anatomical cavity, which is surrounded by an organ part; is separated from the cavity or lumen of other organ parts of the same organ by anatomical structures. Examples: cavity of right atrium, medullary cavity of long bone, bone marrow cavity." + cavity of organ part + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Concept absent from FMA. + germ cell + cellule germinale + + + + + + + + + 256172 + Nucleated cell which has a diploid set of 46 chromosomes (23 pairs) . + diploid germ cell + + + + + + + + + 18649 + FMA definition is incorrect (feedback in May 2016 to Mejino): +"Nucleated cell which has a haploid set (23 pairs) of chromosomes." + Nucleated cell which has a haploid set of 23 chromosomes. + gamete + haploid germ cell + haploid nucleated cell + meiotic cell + cellule germinale haploïde + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 68647 + FMA definition: +"Cell which has as its direct part a maximally connected part of cytoplasm. Examples: erythrocyte, corneocyte, lens fiber, thrombocyte." + non-nucleated cell + + + + + + + + + 67513 + FMA definition: +"Cell which has as its direct part a maximally connected part of protoplasm. Examples: hepatocyte, erythroblast, skeletal muscle cell, megakaryocyte." + nucleated cell + cellule nuclée + + + + + + + + + 72300 + Error in the FMA definition "Nucleated cell which has one or more diploid sets (46 pairs) of chromosomes." + In the FMA, "diploid cell" is a synonym, which is not allways true (some germ cell are diploid too) + Nucleated cell which has one or more diploid sets (23 pairs) of chromosomes. + cellule somatique + somatic cell + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + aka67944 + Epencephalon-1 + Segment of neuraxis that has as its parts the cerebellar cortex, cerebellar nuclear complex and cerebellar white matter. + cerebellum + cervelet + cerebellum + + + + + + + + + + Change or not change, that is the question. + any object whose instantiation takes place in time + describes change of an intentional object + kind of object it is state of: physical, ideal, mental. + 121121 + Menelas definition : +"A change is a description of a given intentional object when it is changing. Basically, a state change is the moving from a start state to an end state. According to the fact whether the change is motivated by an intentional human behaviour, or caused by a causal principle, one has an intentional change with its a motive and a reason, or an unintentional change, with a before_state and an after_state." + +CG Representation : [change: _x]- (happens_loc)-->[spatial_object] (purported_ideal_obj)-->[ideal_object] (purported_abstract_obj)-->[abstract_object] % + change + changement + + + + + + + + + Calcul de la clairance en utilisant +- creatinine urinaire +- creatinine sanguine + clairance de la créatinine + + + + + + + + + clairance de la créatinine (Cockroft) + clairance de la créatinine calculée par la formule de Cockroft + + + + + + + + + New York Heart Association Functional Classification + + + + + + + + + 63931 + fetal heart + coeur foetal + cœur fœtal + + + + + + + + + 42385 + neck of femur + col du fémur + + + + + + + + + coma + + + + + + + + + + + + + + + + + + + + + + + + + FMAID: 7095 + composant cardiaque + + + + + + + + + conscient + + + + + + + + + + + + + + + + + PSF + cordocentèse + ponction de sang fœtal + + + + + + + + + CCAM : Prélèvement de sang de plusieurs fœtus, par ponction du cordon ombilical. + +(correspond à trois activités : guidage échographique et cordocentèse sur plusieurs fœtus, assistance hémobiologique) + JQHF001 + cordocentèses multiples + + + + + + + + + CCAM : Prélèvement de sang d'un fœtus, par ponction du cordon ombilical. + +(correspond à trois activités : guidage échographique et cordocentèse sur un fœtus, assistance hémobiologique) + JQHF002 + cordocentèse simple + + + + + + + + 85541 + umbilical cord + cordon ombilical + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 86464 + corpus callosum + corpus callosum + + + + + + + + + body of corpus callosum + corpus callosum body + corpus callosum, body + trunk of corpus callosum + corps du corps calleux + corps du corps calleux + tronc du corps calleux + corpus callosum truncus + corpus callosum, corpus + truncus corporis callosi + truncus corpus callosi + + + + + + + + + 63919 + fetal body + + + + + + + + + + + + + + + + + + + + + + + + + + + 72248 + cerebellar cortex + cortex of cerebellum + cortex cérébelleux + cortex cerebelli + + + + + + + + cotyledon + cotylédon + cotylédon placentaire + unité placentaire + + + + + + + + + + has all properties of the physical objects. + is an individual. Can be set in the plural so that one can count them when the are in the plural. + est énumérable + Menelas definition : +"a countable object is a real object for which one is able to count its occurrences in the real world. A countable object is associated to a natural number, while a mass_object to a real number. + +There are also some distinctions in the way of qualifying them: there are some, many etc, occurrences of a countable objects, but only plenty of a mass object." + +CG Representation : +[countable_object: _x]- + (made_of)-->[mass_object] + (countains)-->[mass_object] + (constituted_of)<--[mass_object] + (countable_object_unit)<--[quantitative_val] + (definition)<--[set]--(cardinality)-->[cardinal_quantity] + --(quantitative_number)-->[quantitative_val] + % + countable object + Objet dont l'on peut compter les instances, au contraire des liquides par exemple. + objet comptable + objet énumérable + + + + + + + + + défibrillateur + + + + + + + + + défibrillateur automatique + + + + + + + + + défibrillateur semi-automatique + + + + + + + + + + + + + + + + + + + + + + + Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus. + aka62001 + between brain + diencephalon + interbrain + mature diencephalon + diencéphale + diencephalon + + + + + + + + + doute + + + + + + + + + droitier + + + + + + + + + corps calleux à controler + corps calleux à recontroler + corps calleux à revoir + corps calleux à vérifier + + + + + + + + + absence de corps calleux + corps calleux absent + + + + + + + + + corps calleux anormal + + + + + + + + + corps calleux aperçu + + + + + + + + + aspect normal du corps calleux + corps calleux d'allure normale + corps calleux d'aspect normal + + + + + + + + + corps calleux bien dégagé + + + + + + + + + corps calleux bien développé + + + + + + + + + corps calleux bien suivi + + + + + + + + + corps calleux bien visualisé + corps calleux bien vu + + + + + + + + + corps calleux complet + corps calleux vu dans sa totalité + + + + + + + + + corps calleux court + + + + + + + + + corps calleux de longeur normale + + + + + + + + + corps calleux de taille normale + + + + + + + + + corps calleux dégagé + + + + + + + + + corps calleux difficile à dégager + corps calleux difficile à dérouler + corps calleux difficile à voir + + + + + + + + + corps calleux difficile à voir dans sa totalité + corps calleux difficile à voir en entier + corps calleux difficile à voir en totalité + + + + + + + + + corps calleux en place + + + + + + + + + corps calleux épais + + + + + + + + + + + + + + + + + corps calleux accessible + corps calleux explorable + corps calleux visible + + + + + + + + + corps calleux fin + corps calleux grêle + + + + + + + + + corps calleux mal explorable + + + + + + + + + corps calleux mal identifié + corps calleux mal individualisé + + + + + + + + + corps calleux mal visible + + + + + + + + + corps calleux mal vu + + + + + + + + + mesurant + mesuré à + + + + + + + + + corps calleux non accessible + corps calleux non explorable + + + + + + + + + corps calleux non visualisé + corps calleux non vu + + + + + + + + + corps calleux normal + corps calleux vu normal + + + + + + + + + + + + + + + + + + + + + + + + + corps calleux paraissant habituel + + + + + + + + + corps calleux paraissant inhabituel + corps calleux semblant inhabituel + + + + + + + + + corps calleux pas encore accessible + + + + + + + + + corps calleux de petite taille + corps calleux petit + + + + + + + + + corps calleux présent + + + + + + + + + corps calleux refoulé + + + + + + + + + corps calleux régulier + + + + + + + + + corps calleux semblant complet + + + + + + + + + corps calleux suivi + corps calleux suivi en sagittal + + + + + + + + + corps calleux très étiré + + + + + + + + + corps calleux très mal explorable + + + + + + + + + corps calleux paraissant court + corps calleux semblant court + corps calleux un peu court + + + + + + + + + corps calleux paraissant épais + corps calleux un peu épais + corps calleux un peu épaissi + + + + + + + + + corps calleux visualisé + corps calleux vu + + + + + + + + + cervelet à revoir + + + + + + + + + absence de cervelet + cervelet absent + + + + + + + + + aspect asymétrique du cervelet + cervelet asymétrique + cervelet d'aspect asymétrique + + + + + + + + + aspect destructuré du cervelet + cervelet d'aspect destructuré + + + + + + + + + aspect inhabituel du cervelet + cervelet d'aspect inhabituel + + + + + + + + + aspect habituel du cervelet + aspect normal du cervelet + cervelet d'allure normale + cervelet d'aspect habituel + cervelet d'aspect normal + + + + + + + + + cervelet attiré vers le trou occipital + + + + + + + + + aspect d'ouverture postérieure du cervelet + cervelet avec un aspect d'ouverture postérieure + + + + + + + + + cervelet bas situé + cervelet en situation basse + + + + + + + + + beau cervelet + bel aspect du cervelet + + + + + + + + + cervelet de largeur normale + + + + + + + + + cervelet de mensurations normales + cervelet de taille normale + cervelet de volume normal + + + + + + + + + cervelet déformé + + + + + + + + + cervelet déformé et plaqué à la fosse postérieure + + + + + + + + + cervelet déformé et plaqué au trou occipital + + + + + + + + + cervelet dévié + + + + + + + + + + + + + + + diamètre transervse du cervelet + largeur du cervelet + + + + + + + + + cervelet en biais + + + + + + + + + cervelet hyperéchogène + + + + + + + + + cervelet identifiable + + + + + + + + + cervelet mal identifiable + + + + + + + + + cervelet non dégagé + + + + + + + + + cervelet non identifiable + + + + + + + + + cervelet non visible + + + + + + + + + cervelet perçu + + + + + + + + + cervelet de petite taille + petit cervelet + + + + + + + + + cervelet sans aspect de banane + cervelet vu sans aspect de banane + + + + + + + + + cervelet de type Arnold Chiari + + + + + + + + + cervelet visualisé + cervelet vu + + + + + + + + + contours irréguliers des hémisphères cérébelleux + + + + + + + + + + + + + + + protubérance d'aspect normal + + + + + + + + + + + + + + + + + agénésie du vermis + agénésie vermienne + + + + + + + + + + + + + + + + + vermis RAS + vermis d'allure habituelle + vermis d'allure échographique habituelle pour le terme + vermis d'aspect habituel + vermis d'aspect normal + + + + + + + + + vermis de bel aspect + vermis de bel aspect échographique + + + + + + + + + + + + + + + + + + + + + + + + + doute sur le vermis + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + vermis semblant complet + + + + + + + + + + + + + + + + + vermis visible + + + + + + + + + + + + + + + + + + + + + + + JNQM001 + early pregnancy ultrasound scan + CCAM : Échographie non morphologique de la grossesse avant 11 semaines d'aménorrhée + échographie précoce + + + + + + + + + Echelle NIHSS ( National Institute of Health Stroke Score) + echelle NIHSS + score NIHSS + + + + + + + + + CCAM : Échographie biométrique et morphologique d'une grossesse uniembryonnaire au 1er trimestre + examen de routine + JQQM010 + écho T1 + échographie du premier trimestre de singleton + + + + + + + + + CCAM : Échographie biométrique et morphologique d'une grossesse multiembryonnaire au 1er trimestre + JQQM015 + échographie du premier trimestre de grossesse multiple + + + + + + + + + examen de routine + CCAM : Échographie biométrique et morphologique d'une grossesse unifœtale au 2ème trimestre, avec ou sans échographie-doppler des artères utérines de la mère ou des vaisseaux du cordon ombilical. + +(À l'exclusion de : échographie d'une grossesse unifœtale à partir du 2ème trimestre avec échographie-doppler des artères utérines de la mère et des vaisseaux du fœtus, pour souffrance fœtale, codée JQQM002 ) + JQQM018 + écho T2 + échographie du second trimestre de singleton + + + + + + + + + JQQM019 + CCAM : Échographie biométrique et morphologique d'une grossesse multifœtale au 2ème trimestre, avec ou sans échographie-doppler des artères utérines de la mère ou des vaisseaux du cordon ombilical. + +(À l'exclusion de : échographie d'une grossesse multifœtale à partir du 2ème trimestre avec échographie-doppler des artères utérines de la mère et des vaisseaux du fœtus, pour souffrance fœtale codée JQQM007) + échographie du second trimestre de grossesse multiple + + + + + + + + + JQQM016 + examen de routine + CCAM : Échographie biométrique et morphologique d'une grossesse unifœtale au 3ème trimestre avec ou sans échographie-doppler des artères utérines de la mère ou des vaisseaux du cordon ombilical. + +(À l'exclusion de : échographie d'une grossesse unifœtale à partir du 2ème trimestre avec échographie-doppler des artères utérines de la mère et des vaisseaux du fœtus, pour souffrance fœtale, codée JQQM002 ) + écho T3 + échographie du troisième trimestre de singleton + + + + + + + + + JQQM017 + CCAM : Échographie biométrique et morphologique d'une grossesse multifœtale au 3ème trimestre, avec ou sans échographie-doppler des artères utérines de la mère ou des vaisseaux du cordon ombilical. + +(À l'exclusion de : échographie d'une grossesse multifœtale à partir du 2ème trimestre avec échographie-doppler des artères utérines de la mère et des vaisseaux du fœtus, pour souffrance fœtale codée JQQM007) + échographie du troisième trimestre de grossesse multiple + + + + + + + + + CCAM : Échographie et hémodynamique doppler du cœur et des vaisseaux intrathoraciques du fœtus. + JQQM008 + échocardiographie fœtale + + + + + + + + + + + + + + + + + JQQM003 + CCAM : Échographie de surveillance de la croissance fœtale avec échographie-doppler des artères utérines de la mère et des vaisseaux du fœtus + échographie de contrôle de croissance avec étude Doppler + + + + + + + + + JQQM001 + CCAM : Échographie de surveillance de la croissance fœtale + échographie de contrôle de croissance + + + + + + + + + + + + + + + + + YYYY075 + CCAM : Échographie de contrôle ou surveillance de pathologie gravidique fœtale ou maternelle au cours d'une grossesse multifœtale + échographie de surveillance de pathologie pour une grossesse multiple + + + + + + + + + YYYY088 + CCAM : Échographie de contrôle ou surveillance de pathologie gravidique fœtale ou maternelle au cours d'une grossesse unifœtale + échographie de surveillance de pathologie pour une grossesse simple + + + + + + + + + CCAM : Mesure de la longueur du canal cervical du col de l'utérus, par échographie par voie vaginale. + JQQJ037 + écho col + échographie du col + échographie du col de l'utérus + + + + + + + + + échographie de grossesse multiple + + + + + + + + + échographie de dépistage de grossesse singleton + + + + + + + + + échographie postnatale + + + + + + + + + CCAM : Échographie d'une grossesse multifœtale à partir du 2ème trimestre avec échographie-doppler des artères utérines de la mère et des vaisseaux des fœtus, pour souffrance fœtale. + JQQM007 + échographie pour souffrance fœtale d'une grossesse multiple + + + + + + + + + CCAM : Échographie d'une grossesse unifœtale à partir du 2ème trimestre avec échographie-doppler des artères utérines de la mère et des vaisseaux du fœtus, pour souffrance fœtale. + JQQM002 + échographie pour souffrance fœtale d'une grossesse simple + + + + + + + + + ETF + échographie transfontanellaire + + + + + + + + + + + + + + + + + + + + + + + Service de pédiatrie : Age + Age + Service de pédiatrie + Service de pédiatrie + enfant + + + + + + + + + a une masse + : a une dimension +a une masse +a des limites + Anatomischer Satz + Anatomical set + Material anatomical entity which consists of the maximum number of discontinuous members of the same class. Examples: set of cranial nerves, ventral branches of aorta, set of mammary arteries, thoracic viscera, dental arcade. + Insieme anatomico + a une dimension +a une masse +a des limites + ensemble anatomique + + + + + + + + + + + + + + + + + + + + + + + + + Ensemble d'organes + + + + + + + + + Ensemble de régions d'organes + + + + + + + + 1 + Menelas definition : +"everything for which one has terms ot speak about it in CG. " + +CG Representation : [entity: _x] + entity + Au sens Menelas : +"Tout ce dont on peut avoir envie de parler. Idem DOLCE qui parle d'une ontologie de particuliers plutôt que d'universaux " + +NB : La notion de "substratum" disctincte de "entitée" de MENELAS n'est pas conservée ici. +(Au sens Menelas : "Un substrat est tout ce qui peut etre sujet d'une proposition impliquant un atome de connaissance du domaine. Il represente quelque chose dans le domaine. Il a un ou des attributs et est relie aux autres substrats") + entitée + + + + + + + + + + + + + + + + + + + + + + + + + FMA definition : +"Immaterial anatomical entity which has three spatial dimensions. Examples: body cavity, thoracic cavity, lesser sac, cavity of right atrium, lumen of aorta, mediastinal space, space of anterior compartment of forearm." + anatomical space + espace anatomique + + + + + + + + + + + + + + + + + enceinte + etat de grossesse + + + + + + + + + état hémodynamique + + + + + + + + + + + + + + + + + clinical examination + examen clinique + + + + + + + + + + + + + + + examen fœtopathologique + + + + + + + + + morphological examination + examen morphologique + + + + + + + + + examen physique + + + + + + + + + + + + + + + changes are desired or intentionnally provoked. + kind of state that is changed. + Menelas definition : +action performed by a doctor to acquire knowledge about the medical state of the patient + +CG Representation : +[examination:_x]- + (agt)-->[human_being:_doc] + --(defines_cultural_function)-->[cultural_system_function] + --(cultural_role)-->[doctor] + (pat)-->[human_being:_pat] + --(defines_cultural_function)-->[cultural_system_function] + --(cultural_role)-->[patient] + (purported_obj)-->[human_being:_pat] + (happens_loc)-->[object_area]- + (defines_area)<--[hospital] + (loc_at)-->[town]--(loc_at)-->[country] + %% + examination + examen + + + + + + + + + + + + + + + + + + + + + + + + + Fibroblaste du derme papillaire + + + + + + + + + fréquence respiratoire + + + + + + + + + gaucher + + + + + + + + + 61946 + corpus callosum genu + genu of corpus callosum + genou du corps calleux + corpus callosum, genu + genu corporis callosi + genu corpus callosi + + + + + + + + + + + + + + + + + polar body + globule polaire + + + + + + + + + first polar body + globule polaire 1 + + + + + + + + + second polar body + globule polaire 2 + + + + + + + + + + + + + + + + + mesure de la glycémie à jeun et post prandiale + + + + + + + + + + + + + + + + + + + + + + + + + groupe A + groupe sanguin A + + + + + + + + + groupe AB + groupe sanguin AB + + + + + + + + + 49443 + Anatomischer Block + Anatomical structure, which has as its parts a heterogeneous collection of organs, organ parts, cells, cell parts or body part subdivisions that are adjacent to, or continuous with one another; does not constitute a cell part, cell, tissue, organ, organ system or organ system subdivision, cardinal body part, body part subdivision or anatomical junction. Examples: joint, adnexa of uterus, root of lung, renal pedicle, back. + anatomical cluster + Racimo anatómico + regroupement anatomique + regroupement anatomique + Serie di ingranaggi anatomica + + + + + + + + + groupe B + groupe sanguin B + + + + + + + + + 83143 + cell part cluster of neuraxis + neuraxis layer + groupe de parties de cellules du SNC + groupe de parties de cellules du système nerveux central + + + + + + + + + 83115 + Anatomical cluster which has as direct parts cell parts from two or more cells + cell part cluster + groupe de parties de cellule + + + + + + + + + groupe O + groupe sanguin O + + + + + + + + + Type de patient + Type de patient + groupe sanguin + + + + + + + + + hyperglyémie provoquée par voie orale + + + + + + + + + 62845 + erythrocyte + red blood cell + globule rouge + hématie + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 76925 + cerebellum hemisphere + hemisphere of cerebellum + hémisphère cérébelleux + néocervelet + hemispherium cerebelli + + + + + + + + + hémisphère cérébral droit + + + + + + + + + hémisphère cérébral gauche + + + + + + + + + + + + + + + One of two bilateral, largely symmetrical organ subdivisions within the telencephalon which contain the cerebral cortex and cerebral white matter. + aka61817 + cerebral hemisphere + hémisphère cérébral + hemispherium cerebralis + hemispherium cerebri + + + + + + + + + + + + + + + + + + + + + + + + + + + human being + être humain + + + + + + + + + either qualitative categorisation or unit categorisation. + point of view on ideal objects + human role + Au sens OntoDPN : +"Role d'une personne humaine. +Appliqué à un être humain existant dans la monde physique." + rôle humain + + + + + + + + + IRM + imagerie par résonance magnétique + + + + + + + + + + + + + + + + + + + + + + + + + examen par résonance magnétique + postnatale + examen par résonance magnétique + examen par résonance magnétique : postnatale + + + + + + + + + + + + + + + prénatale + examen par résonance magnétique : prénatale + examen par résonance magnétique + IRM anténatale + IRM prénatale + examen par résonance magnétique + + + + + + + + + + + + + + + + + absence de corps calleux + corps calleux absent + + + + + + + + + agénésie du bec et du genou + agénésie du bec et du genou du corps calleux + + + + + + + + + agénésie du bec et du splénium + agénésie du bec et du splénium du corps calleux + + + + + + + + + corps calleuxcomplet + + + + + + + + + bref + corps calleux court + + + + + + + + + corps calleux épais + + + + + + + + + épaisseur du CC + épaisseur du corps calleux + + + + + + + + + corps calleux fin + + + + + + + + + longueur du CC + longueur du corps calleux + + + + + + + + + corps calleux non visible + + + + + + + + + corps calleux non visualisé + corps calleux non vu + + + + + + + + + corps calleux normal + corps calleux vu normal + + + + + + + + + corps calleux présent + + + + + + + + + corps calleux très court + + + + + + + + + corps calleux trop court + + + + + + + + + corps calleux vu + + + + + + + + + d'aspect normal + + + + + + + + + + + + + + + cervelet de foliation normale + de foliation normale + + + + + + + + + hémisphère cérébelleux de foliation anormale + hémisphère de foliation normale + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + de petite taille + petit + un peu petit + + + + + + + + + d'aspect normal + + + + + + + + + complet + + + + + + + + + de surface inferieure à la normale + + + + + + + + + de surface normale + + + + + + + + + de taille inferieure à la normale + + + + + + + + + mal roté + + + + + + + + + non analysable + + + + + + + + + petit + + + + + + + + + tassé + + + + + + + + + bien vu + vu + + + + + + + + + + abstract : essence different of existence +ideal : essence = existence +Object which is not situated in time or space. + + it is something + its referent is itself: no difference between type and instances. + whether it is defined about something else. + 122 + Menelas definition : +"Objets that are not situated in time nor in space. They are ideals and their denotations are themselves. These are ways of considering abstract_object that do not have to be instantiated while abstract_object have. " + +CG Representation : [ideal_object: _x] + ideal object + Au sens Menelas: +"Objets qui ne sont situes ni dans le temps ni dans l'espace. Les "abstract" de DOLCE semble-t-il." + objet idéal + + + + + + + + + 67112 + has mass : false + has mass: false + FMA definition : +"Physical anatomical entity which is a three-dimensional space, surface, line or point associated with a material anatomical entity. Examples: body space, surface of heart, costal margin, apex of right lung, anterior compartment space of right arm." + Immaterial physical anatomical entity + immaterial anatomical entity + entité anatomique immatérielle + + + + + + + + + Structure mal (ou partiellement) identifiée, mal vue, à recontroler. + indéfini + + + + + + + + + indice de masse corporelle + + + + + + + + + cortex insularis + lobus insularis + + + + + + + + + + + + + + + + + aka67329 + The insula is the one of five lobes of the cerebral hemisphere. It lies in the depths of the lateral fissure and is covered by portions of the frontal, parietal and temporal lobes. + central lobe + cortex of island + insula + insula lobule + insular cortex + insular lobe + insular region + island of Reil + insula + cortex insularis + lobus insularis + + + + + + + + + + Change or not change, that is the question. + any object whose instantiation takes place in time. Description of what is considered. + essence that is instantiated in a reference universe + time/space + 1211 + Menelas definition : +"An INTENTIONAL_OBJECT is an object that can not be found in the physical world nor in the abstract or temporal one. Such an object is a description of the world or of a change in the world. It is intentional because this the way we think of the world: not directly to physical, abstract or temporal objects, but through the states and state_changes in which they occur. It is the reason why intentional_object amounts to the Menelas phase_I concept named "timed". Hence this concept intentional_object could be named timed_object. In the same way, temporal_object could be named time_object. To be consensually decided. Every intentional_object is connected to a temporal object because it is temporally situated. On the other hand, it is not spatially situated in itself, but only through the mediation of the physical objects it is a state or a state change of. This fact is parallel to the fact the physical objects (individuated objects) are not temporally situated but spatially situated. To be temporally situated, they have to be considered through an intentional object. Always to follow philosophical metaphors, one can say that the intentional objects, having a mental nature, are given within the time dimension, which the apriori form of the internal sense, in the kantian terminology. The physical objects are given in the apriori form of the external sense, i.e. space. However, since states and state changes conflate different types of objects, they conflate the two dimensions." + +CG Representation : [intentional_object: _x]- (content)<--[state_of_mind]--(noetic_modality)-->[thetic_modality:_t] (noematic_modality)-->[thetic_modality:_t] (triggering_factor)-->[intentional_object] (intentional) (real) (timed_modality)-->[temporal_object] (timed_date)-->[date_time_stamp:_date2] --(day_temporal_measure)-->[quantitative_val] --(reference_unit)-->[temporal_datation] (timed_begin_at)-->[date_time_stamp:_date2] (timed_end_at)-->[date_time_stamp:_date2] (timed_occurs)-->[date_time_stamp:_date2] (timed_during)-->[temporal_interval:_it1]- (temporal_interval_measure)-->[quantitative_val] --(reference_unit)-->[temporal_duration] (begin_at)-->[date_time_stamp:_date1] (end_at)-->[date_time_stamp:_date1] (time_covers)-->[date_time_stamp:_date1] (time_date)-->[date_time_stamp:_date1] --(day_temporal_measure)-->[quantitative_val] --(reference_unit)-->[temporal_datation] (interval_temporal_rel)-->[temporal_interval:_it2]- (timed_during)<--[intentional_object] (temporal_interval_measure)-->[quantitative_val] --(reference_unit)-->[temporal_duration] (time_date)-->[date_time_stamp:_date] --(day_temporal_measure)-->[quantitative_val] --(reference_unit)-->[temporal_datation] (begin_at)-->[date_time_stamp:_date] (end_at)-->[date_time_stamp:_date] (time_covers)-->[date_time_stamp:_date]% (interval_during)-->[temporal_interval:_it2] (interval_after)-->[temporal_interval:_it2] (interval_before)-->[temporal_interval:_it2] (interval_start)-->[temporal_interval:_it2] (interval_end)-->[temporal_interval:_it2] (interval_inside)-->[temporal_interval:_it2] (interval_outside)-->[temporal_interval:_it2] (interval_simul)-->[temporal_interval:_it2] (interval_proj)-->[temporal_interval:_it2] (interval_succ)-->[temporal_interval:_it2] % % + intentional object + Au sens Menelas : +"Un objet intentionnel est un objet qui ne peut être trouve dans le monde physique, ni dans le monde abstrait ou temporel. Un tel objet est une description du monde ou d'un changement dans le monde. Il est intentionnel parce qu'il est la façon dont on pense le monde : pas directement des objets physiques, abstraits ou temporels mais à travers les états ou les processus qui s'y definissent." + objet intentionnel + + + + + + + + + about intentional_object: action or state. + internalised point of view on abstract objects + According to Menelas : +atribute about intentional object. + +CG Representation : +[intentional_object_attr: _x]<--(attr)--[intentional_object] + intentional object atribute + attribut d'objet intentionnel + attribut intentionel + + + + + + + + + interrogation + interrogatoire + + + + + + + + + latéralité + + + + + + + + + + + + + + + + + + + + + + + + + amniotic fluid + liquide amniotique + + + + + + + + + + + + + + + lobe cérébral + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + are not individuals. One can not count them, but measure the quantity of it. Cannot be set in the plural. + has all properties of the physical objects. + Menelas deifinition : +"a mass_object is a real_object for which one is not able to say how many, but only how much. So there is not a number, but a quantity attached to a mass_object. + +However, a mass_object is a real object, and have its properties. As such, it has locations, parts and a causal power. It must not be confused with the role any real object can have, of being the material of what a real object is built of. When an object is considered as material, it is not considered as a fully real object. For example, a gold nugget (countable object) is built of gold (mass object). As mass object, gold has physical properties. As material of nuggets, gold has not these properties, because they are attached now to the nugget itself, to the objects that are built of gold." + + +CG Representation : +[mass_object: _x]- + (made_of)<--[countable_object] + (countains)<--[countable_object] + (constituted_of)-->[countable_object] + (mass_quantity)-->[quantitative_val]--(reference_unit)-->[unit] + % + mass object + n'est pas énumérable + objet massique + + + + + + + + + + + + + + + + + + + + + + + + + FMAID: 7184 + membres inférieurs + + + + + + + + + FMAID: 7183 + membres supérieurs + + + + + + + + + + + + + + + + + + + + + aka61993 + Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct. + midbrain + mésencéphale + mesencephalon + + + + + + + + + idem + point of view internalised as a property in the described object or reference system to consider these properties. + point of view on abstract objects + point of view on objects + According to Menelas, meta-abstract object is a point of view on abstract objects, point of view which is internalised as a property in the described object or reference system to consider these properties. + +CG Representation : +[meta_abstract_object: _x]- + (has_meta_view_point)-->[meta_ideal_object] + (has_view_point)<--[abstract_object] + % + meta-abstract object + + + + + + + + + ideal/abstract + point of view on ideal objects + point of view internalised as a property in the described object or reference system to consider these properties. + point of view on objects + metaideal object + Des ideaux "purs", qui n'ont aucune instanciation dans le monde réel. + objet meta-idéal + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + description bears on morphological aspects. + human being / non human object + Menelas definition : +morphologic anomaly of an anatomical object observed on an image obtained in a paraclinic examination. + +These anomalies are not process: hence vasoconstriction means here that an artery is constricted on the image, but not that the process of vasoconstriction is in action. + +These states are not always states of a patient or a part of a patient. They can states read on a radio as well as states of the patient. + +CG Representation : +[morpho_anomaly: _x]- + (consists_in)-->[abnormal] + % + morphological anomaly + morphological aspect of an internal object of a human. + morphological sign + signe morphologique + + + + + + + + + description of a physical object, qua physical. + description bears on morphological aspects. + Menelas CG Representation : +[morpho_state: _x]- + (state_of)-->[physical_object:_po] + --(part)-->[physical_object:_y] + (consists_of)-->[physical_object: _y] + --(attr)-->[physical_object_attr]- + (val_quant)-->[quantitative_val:_z] + (val_qual)-->[physical_val:_z2]% + (consists_in)-->[quantitative_val:_z] + (consists_in)-->[physical_val: _z2] + (morphological_aspect)-->[morpho_system_function:_m1]- + (defines_morphology)<--[physical_object:_y] + (morphological_role)-->[morpho_role_function: _t] + --(relative_to)-->[morpho_system_function:_m2] + <--(defines_morphology)--[physical_object:_po]% + (consists_in)-->[morpho_role_function: _t] % + morphological state + état morphologique + + + + + + + + + + + + + + + + + + Concept fermé par pattern de type value partition + attribut de signe morphologique + + + + + + + + + + décédé + mort + + + + + + + + + mort encéphalique + + + + + + + + + presence of fetal movments + + + + + + + + + + + + + + + + + + + + + + + different destinations. + is an individual. Can be set in the plural so that one can count them when the are in the plural. + not made by man + OntoDPN definition : +"Objects not created by man : living organisms, living elements ..." + natural object + objet biologique + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Le cervelet n'est pas visualisé, soit parce qu'il est absent, soit parce qu'il n'a techniquement pas pu être visualisé + non observation du cervelet + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + non observé + + + + + + + + + normal + + + + + + + + + Sign for which interpretation depends on the context + normal variant + Signe dont l'interprétation dépend du contexte + variante de la normale + variante du normal + + + + + + + + + Age + Service de pédiatrie + Service de pédiatrie : Age + Service de pédiatrie + nourrisson + + + + + + + + + + + + + + + 305751 + anatomical structure + structure anatomique + + + + + + + + + a une masse + 67135 + a une dimension +a une masse +a des limites +a un volume + Anatomische Struktur + Biological structure + Material anatomical entity which is generated by coordinated expression of the organism's own genes that guide its morphogenesis; has inherent 3D shape; its parts are connected and spatially related to one another in patterns determined by coordinated gene expression. Examples: heart, right ventricle, mitral valve, myocardium, endothelium, lymphocyte, fibroblast, thorax, cardiovascular system, hemoglobin, T cell receptor. + non gestational anatomical structure + Correspond au concept AnatomicalStructure du FMA, sans les fils : GestationalStructure, Organ System et Organ System Subdivision + structure anatomique non gestationelle + structure biologique + Struttura anatomica + + + + + + + + + 63917 + FMA definition : +"Anatomical structure, which is the developmental form of a vertebrate animal or any of its parts at any given time from fertilization of the egg by the sperm to parturition. Examples: embryo, embryonic structure, fetus, fetal heart." + Structure anatomique au cours de la gestation + gestational structure + structure gestationnelle + + + + + + + + + 63920 + Gestational structure, which is the developmental form of a vertebrate animal or any of its parts at any given time point from 8 weeks of gestation to parturition. Examples: fetus, fetal organ, fetal body part, placenta. +To differentiate it from other anatomical structures, its label ends with en "_F". + fetal structure + structure fœtale + + + + + + + + + Developping organism + + + + + + + + + 9669 + FMA definition : +"Material anatomical entity in a gaseous, liquid, semisolid or solid state, with or without the admixture of cells and biological macromolecules; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures. Examples: saliva, semen, cerebrospinal fluid, respiratory air, urine, feces, blood, plasma, lymph." + body substance + portion of body substance + substance du corps + + + + + + + + + 83029 + trophoblast + trophoblaste + + + + + + + + + 82472 + FMA definition : +"Anatomical structure which has as its direct parts portions of two or more types of tissue and is continuous with one or more anatomical structures likewise constituted by portions of two or more tissues distinct from those of their complement. " + cardinal organ part + partie d'un organe + + + + + + + + + 68646 + FMA definition : +"Anatomical structure which has as its boundary the external surface of a maximally connected plasma membrane. Examples: lymphocyte, fibroblast, erythrocyte, neuron." + cell + cellule + + + + + + + + + 256135 + FMA definition : +"Anatomical structure which is the aggregate material substance of an individual member of a species." + body + corps + + + + + + + + + 67498 + organ + organe + + + + + + + + + FMA definition : +"Cardinal organ part which is bounded predominantly by bonafide boundaries. Examples: lobe of lung, osteon, acinus, submucosa, anterior leaflet of mitral valve, fibrous capsule of kidney, compact bone, striated muscle fasciculus." + organ component + Composant d'organe + FMAID: 14065 + + + + + + + + + 67619 + FMA defintion +"Cardinal organ part which is a fiat subdivision of an organ. Examples: lingula of left lung, tail of pancreas, artery, trochanter, nodulus of semilunar valvule, right side of heart, duodenum, fundus of stomach." + organ region + région d'un organe + + + + + + + + + 86140 + FMA definition : +"Organ region with one or more anchored fiat boundaries. Examples: artery, cervical part of esophagus, pelvic part of vagina, horn of thyroid cartilage, anterior segment of eyeball." + organ segment + segment d'un organe + + + + + + + + + 55268 + FMA definition : +"Organ region with one or more floating fiat boundaries. Examples: apical zone of lung, superior pole of kidney, gingiva, apex of prostate, ascending colon proper." + organ zone + zone d'un organe + + + + + + + + + 10483 + zone of bone organ + zone sur les os + + + + + + + + + 24013 + FMA definition : +"Subdivision of long bone which forms the part of the bone between the two epiphyses; together with other the subdivisions of long bone, it constitutes the long bone. Examples: diaphysis of humerus, diaphysis of femur." + diaphysis + diaphyse + + + + + + + + + 63887 + FMA definition : +"Anatomical structure which has as its parts one or more ordered aggregates of nucleotide, amino acid fatty acid or sugar molecules bonded to one another. Examples: collagen, DNA, neurotransmitter receptor, troponin." + biological macromolecule + macromolécule biologique + + + + + + + + + 256133 + body of vertebrate + corps de vertébré + + + + + + + + + FMA definition : +"Anatomical structure which has as its direct parts instances of anatomical sets of organs and cardinal organ parts spatially associated with either axial or appendicular skeleton; in their aggregate are surrounded by part of skin. Example: head." + body region + cardinal body part + 7153 + partie du corps humain + + + + + + + + + 231424 + body proper + corps propre + + + + + + + + + 7182 + limb + membre + + + + + + + + + 7154 + head + tête + + + + + + + + + 55676 + FMA definition : +"Segment of neuraxis with one or more fixed or anchored fiat boundaries. Examples: thalamus, midbrain, pons, cerebellum." + segment of brain + segment cérébral + + + + + + + + + 79876 + brainstem + tronc cérébral + truncus encephali + + + + + + + + + 55671 + cavitated organ + organe creux + + + + + + + + + 55672 + organ with organ cavity + Órgano con la cavidad del órgano + organe avec cavité d'organe + + + + + + + + + 14543 + colon + côlon + + + + + + + + + + + + + + + + + + + + + 18245 + fallopian tube + oviduct + uterine tube + trompe de Fallope + trompe utérine + salpinx + tuba uterina + + + + + + + + + 55677 + FMA definition : +"Organ with organ cavity, which consists of an arborizing set of tubular organ parts, the walls of which are continuous and surround a continuous lumen. Examples: systemic arterial tree (organ), tracheobronchial tree, biliary tree." + hollow tree organ + organe arborescent + + + + + + + + + 7200 + FMA definition : +Organ with organ cavity which is continuous proximally with the stomach and distally with the large intestine. Examples: There is only one small intestine. + small bowel + small intestine + intestin grêle + intestinum tenue + + + + + + + + + 9704 + ureter + uretère + + + + + + + + + 19667 + urethra + urètre + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 15900 + bladder + urinary bladder + vessie + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 17558 + uterus + utérus + + + + + + + + + 19949 + vagina + vagin + + + + + + + + + 55670 + solid organ + organe plein + + + + + + + + + 55665 + nonparenchymatous organe + organe non parenchymateux + + + + + + + + + 55661 + parenchymatous organ + organe parenchymateux + + + + + + + + + 16558 + FMA definition : +"Anatomical structure which is a remnant of an embryonic structure in the postnatal period. Examples: median umbilical ligament, paroohoron, prostatic utricle, ligamentum arteriosum." + vestigial embryonic structure + reliquat embryonnaire + + + + + + + + + 63863 + acellular anatomical structure + structure anatomique acellulaire + + + + + + + + + 18674 + zona pellucida + zone pellucide + + + + + + + + + 67504 + subdivision of cardinal body part + subdivision des parties du corps humain + + + + + + + + + 9661 + limb region + subdivision de membre + + + + + + + + + 231430 + subdivision of body proper + subdivision du corps propre + + + + + + + + + 9577 + abdomen + abdomen + + + + + + + + + 9576 + thorax + thorax + + + + + + + + + 296970 + FMA definition : +"Developmental organism from 4 weeks to 8 weeks of gestation." + embryo + embryon + + + + + + + + + 63919 + FMA definition : +" Developmental organism from 8 weeks of gestation to birth" + fetus + foetus + + + + + + + + + + + + + + + + + + + + + 17745 + cavity of uterus + endometrial cavity + cavité intra-utérine + cavité utérine + + + + + + + + + vaginal fornix + Fornix du vagin + cul de sac vaginal + + + + + + + + + blood + sang + + + + + + + + + urine + urnie + + + + + + + + + description bears on physical aspects, as provided by the natural sciences. + human being / non human object + state of the patient, observed or induced. + Menelas CG Representation : +[human_being_state: _x]- + (state_of)-->[human_being] + (state_of)-->[physical_object]<--(part)--[human_being] + % + human being state + state of a human being + état d'un être humain + + + + + + + + + description bears on physical aspects, as provided by the natural sciences. + state of the patient, observed or induced. + State of the fetus, who is dicriminated from the mother. + fetal state + état foetal + + + + + + + + + description bears on physical aspects, as provided by the natural sciences. + state of the patient, observed or induced. + Physical state of the mother, who is discriminated from the fetus. + maternal state + état maternel + + + + + + + + + definition under review + ultrasound scan attribute + attribut d'une échographie + + + + + + + + + definition under review + examination route + voie d'examen + + + + + + + + + abdominal route + definition under review + transabdominal route + voie abdominale + voie sus-pubienne + + + + + + + + + definition under review + transvaginal route + vaginal route + voie endovaginale + voie vaginale + + + + + + + + + definition under review + translabial ultrasound + voie périnéale + voie transpérinéale + + + + + + + + + 2D mode + B-mode + bidimensional mode + definition under review + mode 2D + mode B + mode bidimensionnel + + + + + + + + + color Doppler mode + definition under review + mode Doppler couleur + + + + + + + + + Doppler energy + definition under review + power Doppler mode + + + + + + + + + definition under review + pulsed Doppler mode + Doppler pulsé + + + + + + + + + 3D mode + definition under review + three-dimensional mode + mode 3D + mode tridimensionnel + + + + + + + + + test de O'Sullivan + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + it is something + whether it is defined about something else. + : Objet situé dans le temps ou l'espace + Menelas definition : +"An abstract object is defined as a substratum for which one can say it has instances or occurrences in a universe. While there is only one number 2, there are many apples. Hence, 2 is not abstract, while an apple is. " + +CG Representation : [abstract_object: _x] + http://cwi.nl/~troncy/DOE#sws"Entité du domaine" + http://cwi.nl/~troncy/DOE#swp"Entité du domaine, objet possible du discours" + http://cwi.nl/~troncy/DOE#sws"" + Objet situé dans le temps ou l'espace + 121 + abstract object + Au sens Menelas: +"Un objet abstrait est defini comme un substrat dont on peut dire qu'il a des occurences dans l'univers. Alors qu'il y a qu'un nombre 2 il y a plusieurs pommes. 2 n'est pas abstrait alors que pomme l'est. On rejoint les "perdurant" de DOLCE " + objet abstrait + + + + + + + + + Change or not change, that is the question. + essence that is instantiated in a reference universe + essence that is instantiated in a reference universe + Change or not change, that is the question. : any object whose instantiation takes place in space + Menelas definition : +"A PHYSICAL_OBJECT is an objet that can be found in the physical world. Its denotation consists in the set of the concrete objects that are occurrence of this type. Basically, an object is physical as soon as it takes up space and can be in itself localized. Hence it can be composed of parts. These are definitory properties. However, to the essence of a physical_object, belongs also that a physical object can have a form, or a function. However, such possibilities can be forbidden in special cases. For example, pseudo objects will not be object in the full meaning of the term because they cannot realize these essential possibilities. For example, a morphological object is a pseudo object because it is defined only by having a form, but it has not the other properties of the physical objects. Hence, a morphologic object has a form, but not a function. Reciprocally, a system has a function but not a form." + +CG Representation : [physical_object: _x]- (object_spatial_role)-->[spatial_role_function] (defines_fct)-->[physical_functional_object] (part)-->[physical_object:_y] (functional_part)-->[physical_object] (defines_area)-->[object_area] ;; definition (defines_morphology)-->[morpho_system_function] ;optional (defines_systemic_function)-->[system_function] ;optional (defines_physical_function)-->[physical_system_function] (defines_cultural_function)-->[cultural_system_function] (consists_of)<--[state_of_physical_object] (fills_by)<--[spatial_object] (includes)<--[spatial_object] (zone_of)<--[spatial_object] (inst_tool)<--[intentional_change] (involved_obj)<--[unintentional_change] (purported_obj)<--[intentional_change] (process_of)<--[process]- (performs_function)-->[physical_functional_object]- (defines_physical_function)<--[physical_object:_x] (measured_val)-->[value]--(normalised_as)-->[normal] <--(consists_in)--[physical_state] --(consists_of)-->[physical_object:_x] (physical_role)-->[physical_role_function] --(normalised_as)-->[normal] <--(consists_in)--[physical_state] --(consists_of)-->[physical_object:_x]% (dysperforms_function)-->[physical_functional_object]- (defines_physical_function)<--[physical_object:_x] (measured_val)-->[value]--(normalised_as)-->[abnormal] <--(consists_in)--[physical_state] --(consists_of)-->[physical_object:_x] (physical_role)-->[physical_role_function] --(normalised_as)-->[abnormal] <--(consists_in)--[physical_state] --(consists_of)-->[physical_object:_x]%% (attr)-->[physical_object_attr] % + Au sens Menelas: +"Un objet physique est un objet qu'on peut trouver dans le monde physique. Sa dénotation consiste dans un ensemble d'objets concrets qui sont des occurences de ce type. Fondamentalement, un objet est physique autant qu'il occupe de l'espace et peut être localisé. Il peut être composé de parties." + Change or not change, that is the question. + http://cwi.nl/~troncy/DOE#sws"Change or not change, that is the question." + any object whose instantiation takes place in space + 1212 + physical object + objet physique + + + + + + + + + + objet réel + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Observation du vermis cerebelleux en IRM + + + + + + + + + + + + + + + + + + + + + Description d'observation échographique du cervelet. +Exemples : "aspect normal du cervelet" + observation échographique du cervelet + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + observation indéfinie échographique du cervelet + + + + + + + + + + + + + + + + + absence d'élément de description non concluant dans le corpus étudié de radiopédiatrie + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + observé + + + + + + + + + 12237 + FMA definition : +"Anatomical cavity, which is surrounded by all morphological parts of an organ; is continuous within the organ; contains one or more body substances. Examples: pericardial cavity, cavity of stomach, cavity of uterus." + organ cavity + cavité d'organe + + + + + + + + + 9337 + FMA definition : +"Anatomical cavity, which is surrounded by a morphological subdivision of an organ; is continuous with other organ cavity subdivisions of the same organ; together with other organ cavity subdivisions, it constitutes the organ cavity. Examples: lumen of pyloric antrum, lumen of bronchus, cavity of alveolar sac." + organ cavity subdivision + + + + + + + + + FMA definition : +"Anatomical surface, which is the internal or external surface of an organ. Examples: surface of heart, internal surface of stomach, surface of skin." + surface of organ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 63929 + fetal organ + organe du fœtus + organe fœtal + + + + + + + + + + + + + + + + + Diploid female germ cell (46 chorosomes, 4 chromatids) + primary ovocyte + ovocyte 1 + + + + + + + + + 18646 + Haploid female germ cell (23 chorosomes, 2 chromatids) + secondary oocyte + unfertilized egg + ovocyte 2 + ovocytus secondarius + + + + + + + + + 83673 + Diploid female germ cell (46 chorosomes, 2 chromatids) + oogonium + ovogonie + + + + + + + + + PaCO2 + pression partielle du gaz carbonique + + + + + + + + + PaO2 + pression partielle en oygène + + + + + + + + + palpation + + + + + + + + + Menelas definition : +action consisting in experimental tests, using technical equipment. + paraclinical examination + examen paraclinique + + + + + + + + + 64789 + + + + + + + + + partie de l'encéphale + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 256150 + segment of cerebellum + partie du cervelet + + + + + + + + + + + + + + + + + + + + + 61943 + Corpus callosum subdivision + Subdivision of corpus callosum + partie du corps calleux + + + + + + + + + + + + + + + + + aka61996 + forebrain segment + segment of forebrain + partie du prosencéphale + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 63930 + + + + + + + + + Age + Type de patient : Age + Type de patient + Type de patient + + + + + + + + + patient agé + personne agée + sujet agé + + + + + + + + + perte de connaissance + + + + + + + + + + + + + + + + + description of a physical object, qua physical. + description bears on physical aspects, as provided by the natural sciences. + Menelas description : +a physical_state is a state of an individuated_object that describes a partial configuration of the physical world. This description can rely on objects of different types, but it basically consists_of an individuated_object. + +CG Representation : +[physical_state: _x]- + (state_of)-->[physical_object:_po] + --(part)-->[physical_object:_y] + (consists_of)-->[physical_object: _y] + --(attr)-->[physical_object_attr]- + (val_quant)-->[quantitative_val:_z] + (val_qual)-->[physical_val:_z2]% + (consists_in)-->[quantitative_val:_z] + (consists_in)-->[physical_val: _z2] + (physical_aspect)-->[physical_system_function]- + (defines_physical_function)<--[physical_object:_y] + (physical_role)-->[physical_role_function: _t] + --(relative_to)-->[physical_system_function] + <--(defines_fct)--[physical_object:_po]% + (consists_in)-->[physical_role_function: _t] + (caused_by)-->[physical_state:_ps] + (dysfunction_in)-->[value]- + (measured_val)<--[physical_system_function]- + (dysperforms_function)<--[process] + --(process_of)-->[physical_object:_y]% + (normalised_as)-->[abnormal] + <--(consists_in)--[physical_state:_x]% + (dysfunction_in)-->[physical_role_function]- + (physical_role)<--[physical_system_function]- + (dysperforms_function)<--[process] + --(process_of)-->[physical_object:_y]% + (normalised_as)-->[abnormal] + <--(consists_in)--[physical_state:_x] + % + physical state + état physique + + + + + + + + + + + + + + 63934 + placenta + placenta + + + + + + + + + JPHB001 + La CCAM distingue placentocentèse/choriocentèse de biopsie du trophoblaste. + +(correspond à deux activités : guidage échographique et placentocentèse ou choriocentèse) + choriocentèse + placentocentèse + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 62851 + platelet + thrombocyte + plaquette + thrombocyte + + + + + + + + + Type de patient + Type de patient + + + + + + + + + its referent is itself + point of view on abstract or ideal objects + point of view on objects + 1222 + Menelas definition : +"a view_point is an ideal object defined as a way of considering something else. A view point is hence relative to something else and cannot stand alone." + +CG Representation : +[view_point: _x] + point of view + Un point de vue est un objet idéal defini en considerant d'autres choses. Il est relatif à quelque chose et donc ne se définit pas de façon autonome. + point de vue + + + + + + + + + + + + + + + + + JQHB002 + CCAM : Ponction ou biopsie d'un organe fœtal. +Formation : spécifique à cet acte en plus de la formation initiale. +Environnement : spécifique ; proximité d’un bloc obstétrical avec réanimation néonatale. + +(correspond à deux activités : guidage échographique et ponction ou biopsie d'un organe fœtal) + prélèvement fœtal + + + + + + + + + + + + + + + 67943 + Organ component of neuraxis that has as its parts the pontine tegmentum and basal part of pons. + pons + pons of Varolius + pont + protubérance annulaire + pons Varolii + + + + + + + + + prélèvement ovulaire + + + + + + + + + + + + + + + + + + + + + prenatal ultrasound examination + prenatal ultrasound scan + Examen échographique du foetus et de ses annexes + échographie anténatale + échographie prénatale + + + + + + + + + + + + + + + + + pression artérielle diastolique + + + + + + + + + pression artérielle moyenne + + + + + + + + + pression artérielle pulmonaire + + + + + + + + + pression artérielle systolique + + + + + + + + + + + + + + + + + + + + + aka61992 + forebrain + prosencéphale + prosencephalon + + + + + + + + + Pseudo Object + a pseudo_object is like an objet without being a real object. That is, it has most of the characteristics of what is an individuated object, but not all. Namely, pseudo_objects are countable, discrete objects, and most of the time, we want to think of them as objects. + +However, pseudo_objects need other objects to exist; they no ontological autonomy. While this fact can be considered as applicable for every object except God (cf. the spinozian definition of s substance), the ontological dependency is unavoidable for the pseudo_objects while it can be neglected for the others, we call then real objects. + +For example, a pseudo_object looses its consistency when it is separated of what it depends on. An abdomen is not an abdomen when it is no longer in the body; one cannot do a transplantation of an abdomen. However, a heart, or a liver is a real object because they can be transplanted. A liver, separated of the body is alwase a liver: it is the reason why transplantation is possible. + +Finally, every pseudo_object is a collection of physical objects that are related to eachother in such a manner that one can speak of the collection as an object. That is, there is a cohesion principle that provides the collection with the coherence and the unity that make it like an object. + +The splitting principle consists in the kind of cohesion principle. One distinguishes first the systemic principle, that relates objects by their functions to build a global system, considered as an object. For example, the sociologic principle relates objects by their social function: this will a subnode of systemic_object. Finally, morphologic principle relates objects by their position in the real space, so that the collection has the form of an object. + +Basically, a pseudo object is a system of physical objects in which every physical object plays a role. Kinds of pseudo objects correspond then to the kinds of role and system. + +Pseudo-object can have a location, and defines a region. It corresponds to the place where the real objects that participate to the pseudo object have the functionalities between eachother that constitute the pseudo object. + +CG Representation : +[pseudo_object: _x]- + (component_of)<--[real_object] + % + pseudo objet + + + + + + + + + JQQP001 + RCF + Selon CCAM : Enregistrement du rythme cardiaque du fœtus d'une durée de plus de 20 minutes, en dehors du travail + examen du rythme cardiaque fœtal + + + + + + + + + + + + + + + + + + + + + + + + + groupe rhésus + + + + + + + + + groupe - + groupe moins + groupe rhésus - + groupe rhésus moins + + + + + + + + + groupe plus + groupe rhésus + + groupe rhésus + + groupe rhésus plus + + + + + + + + + + + + + + + + + + + + + Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata . + aka67687 + hindbrain + rhombencéphale + rhombencephalon + + + + + + + + + + + + + + + + + saturation en oxygène de l'hémoglobine + + + + + + + + + + + + + + + + + + + + + + + + + TDM + examen tomodensitométrique + scanner + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + score de Glasgow + échelle de Glasgow + + + + + + + + + score de Wells + + + + + + + + + + + + + + + + + + + + + + + segment du mésencéphale fœtal + + + + + + + + + + + + + + + + + segment of neuraxis + segment du SNC + segment du nevraxe + segment du système nerveux central + + + + + + + + + Type de patient + Type de patient + + + + + + + + + description bears on morphological aspects. + dynamic sign + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Description d'observation échographique d'une structure anatomique. +Exemples : "aspect normal du cervelet" ; "corps calleux en place" + signe échographique + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + signe fœtopathologique + + + + + + + + + + + + + + + + + + + + + Etude des expansions des termes : cervelet, foliation, hémisphère cérébelleux, vermis + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + signe IRM + + + + + + + + + sonde abdominale + + + + + + + + + sonde d'échographie + + + + + + + + + sonde endovaginale + sonde vaginale + + + + + + + + + + + + + + + + + + + + + + + + + 72294 + Haploid male germ cell (23 chorosomes, 1 chromatid) + nematoblast + spermatid + spermatide + + + + + + + + + 72292 + primary spermatocyte + spermatocyte 1 + + + + + + + + + 72293 + secondary spermatocyte + spermatocyte 2 + + + + + + + + + 67338 + FMA definition: +"Definitive germ cell of the male sex." + mature sperm cell + sperm + spermatozoïde + + + + + + + + + 61948 + corpus callosum splenium + corpus callosum, splenium + splenium of corpus callosum + splénium du corps calleux + corpus callosum splenium + splenium corporis callosi + splenium corpus callosi + + + + + + + + + Change or not change, that is the question. + any object whose instantiation takes place in time + kind of object it is state of: physical, ideal, mental. + 121122 + Menelas definition : +"According the structure of the state_change, there must be three kinds of state_change, depending on the kinds of world one is concerned with. There are abstract, mental and ideal worlds, hence there are abstract, mental and ideal states (and state_change). a state is an intentional object because it is a mental view on a world. The type of the considered world, and of the corresponding state, is determined by the focussed objects: if the focussed objects are ideal objects, e.g. the social status, the medical discipline, then the related state is a cultural state; if the focussed objects are physical objects, the state is physical; and for intentional object, the state is mental. Every state (or state change) is a mental view on objects, and every types of objects can be concerned. Hence, a physical state is not defined by only physical objects, but also by ideal or cultural objects. The only thing is that the focussed objects (bound the state by the "consists_of" relation) must be physical for the state to be physical. The reason of this fact is that a physical state is not a physical object, but a mental state about physical objects, a representation, or an intentional object." + +CG Representation : [state:_x]- ;;(state_of)-->[substratum] (attr)-->[state_evolution_attr]--(val_qual)-->[state_evolution_val] % + http://cwi.nl/~troncy/DOE#sws"kind of object it is state of: physical, ideal, mental." + thinking of something as unmodified during a given time, through a description. + state + état + + + + + + + + + description of something that is unmodified during a given time. + kind of objects it is state of. + Menelas definition : +description of physical objects considered through a given point of view. As a consequence, the description focusses on a functionality (cultural, physical functions) for which it precises what properties the object have. + +CG Representation : +[state_of_physical_object: _x]- + (state_of)-->[physical_object:_po] + --(part)-->[physical_object:_y] + --(defines_area)-->[object_area] + (consists_of)-->[physical_object: _y]- + (attr)-->[physical_object_attr]- + (val_quant)-->[quantitative_val:_z] + (val_qual)-->[physical_val:_z2]% + (defines_area)-->[object_area]% + (consists_in)-->[quantitative_val:_z] + (consists_in)-->[physical_val: _z2] + (functional_aspect)-->[physical_functional_object]- + (defines_fct)<--[physical_object:_y] + (role)-->[meta_physical_functional_object: _t] + --(relative_to)-->[physical_functional_object] + <--(defines_fct)--[physical_object:_po]% + (consists_in)-->[meta_physical_functional_object: _t] + (consists_loc)-->[object_area] + (after_state)<--[unintentional_change] + (before_state)<--[unintentional_change] + (descriptive_result)<--[intentional_change] + (descriptive_goal)<--[intentional_change] + (motivated_by)<--[intentional_change] + (not_favoured_by)<--[intentional_change] + (complicated_by)<--[intentional_change] + (caused_by)-->[state_of_physical_object] + (not_caused_by)-->[state_of_physical_object] + (origin)-->[state_of_physical_object] + (risk_factor)-->[state_of_physical_object] + (cause_of)-->[state_of_physical_object] + (etiology)-->[state_of_physical_object] + (dysfunction_in)-->[meta_ideal_object] + (functional_aspect)-->[physical_functional_object] + (interpretation)<--[health_condition] + (interpretation_of)-->[health_condition] + (state_localization)-->[relative_location] + % + description of a physical object. If this physical object is a human being, this HB is considered as a physical object but not qua human, i.e. having mental states. + state of physical object + état d'un objet physique + + + + + + + + + Instrument d'aucultation du cœur fœtal + + + + + + + + + 64790 + + + + + + + + + 67509 + subdivision des systèmes d'organe + + + + + + + + + 64792 + subdivision des systèmes d'organe du fœtus + + + + + + + + + FMAID: 45660 + subdivision des voies respiratoires + + + + + + + + + 83930 + + + + + + + + + 83929 + Cell part cluster consisting predominantly of neurites in the brain and the spinal cord. + white matter + white matter of neuraxis + white substance + substance blanche + + + + + + + + + + + + + + + + + + + + + + + + + 67242 + gray matter + gray matter of neuraxis + gray substance + substance grise + substantia grisea + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + système ABO + + + + + + + + + FMAID: 55675 + névraxe + système nerveux central + + + + + + + + + 7149 + système lié aux organes + + + + + + + + + 64791 + système lié aux organes du fœtus + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Organ component of neuraxis that has as its parts the cerebral cortex, cerebral white matter, basal ganglia, septum and fornix, as well as subcortical gray and white matter structures. + aka62000 + telencephalon + télencéphale + cerebrum + + + + + + + + + temperature + temperature corporelle + + + + + + + + + + + + + + + + + + + + + + + + + test fonctionnel + + + + + + + + + 9637 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + aka79876 + + + + + + + + + US + ultrasonography + ultrasound imaging + ultrasound scan + échographie + + + + + + + + + 72173 + fetal uterus + utérus foetal + utérus fœtal + + + + + + + + + + + + + + + + + FMAID: 7100 + ventricule + + + + + + + + + FMAID: 7098 + ventricule droit + + + + + + + + + FMAID: 7101 + ventricule gauche + + + + + + + + + + + + + + + 76928 + cerebellum vermis + vermis of cerebellum + vermis + vermis cérébelleux + vermis cerebelli + + + + + + + + + vigile + éveillé + + + + + + + + + + + + + + + + + + + + + + + + + FMAID: 45662 + VAI + VRI + voies aériennes inférieures + vois respiratoires inférieures + + + + + + + + + FMAID: 45661 + VAS + VRS + voies aériennes supérieures + voies respiratoire supérieures + + + + + + + + + 72395 + FMA definition: +"Developmental organism which is a diploid nucleated cell that results from the union of the sperm and an ovum." + zygote + zygote + + + + + + + + + + + + + + + + + expertise level + + + + + + + + image + + + + + + + + + abdominal palpation sign + + + + + + + + + abdominal sign + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Observation of an abnormal echographic sign in the uterus + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + CG Representation : +[absolute_evaluation_role: _x] + absolute evalutation role + + + + + + + + + absolute unit + + + + + + + + + anaemia + anemia + anémie + + + + + + + + + 9338 + FMA définitions : +"Anatomical space which connects two or more compartment spaces or two or more anatomical cavities. Examples: foramen magnum, pyloric orifice, space of right inguinal canal, nutrient canal space," + anatomical conduit space + + + + + + + + + 3724 + FMA definition : +"Anatomical conduit space that connects two adjacent body spaces, surrounded by two or more subdivisions of two or more organs or organ parts. Examples: right atrioventricular orifice, orifice of artery, hilum of kidney, porta hepatis." + anatomical orifice + anatomical ostium + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + arterial hypotension + + + + + + + + + arterial pressure anomaly + + + + + + + + + aspectual point of view + CG Representation : +[aspect_val:_x]- + (qualified_val)<--[morpho_system_function] + <--(defines_morphology)--[physical_object]- + (state_of)<--[morpho_state] + (consists_of)<--[morpho_state]% + % + aspect value + + + + + + + + + + + + + + + + + bilateral + + + + + + + + + biochemical molecule + molecule involved in processes within and relating to living organisms + molécule biochimique + + + + + + + + + biochemical sign + + + + + + + + + biological sign + + + + + + + + + anomaly of blood cell count + + + + + + + + + bradycardia + + + + + + + + + cardiac sign + + + + + + + + + cardiovascular sign + + + + + + + + + + + + + + + + + + + + + + + + + + + 18076 + cavity of body of uterus + cavité du corps utérin + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 18074 + cavity of fundus of uterus + + + + + + + + + + + + + + + + + + + + + 18081 + cavity of lower uterine segment + cavity of uterine isthmus + + + + + + + + + + + + + + + 18367 + cavity of zone of uterus + + + + + + + + + centimetre + cm + centimètre + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A specific drug, reffered to by its commercial name. + commercial drug + + + + + + + + + concentration unit + unité de concentration + + + + + + + + + + continuous value + + + + + + + + + Blocking fertility temporarily or permanently. It is the function of a physical object. + +CG Representation : +[contraceptive_function: _x] + contraceptive function + + + + + + + + + contracted role + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + crampy pain + douleur spasmodique + + + + + + + + + 1cm3 = 1mL + cm3 + cubic centimetre + centimètre cube + + + + + + + + + changes take place in an abstract state, that is, a state defined on a physical object, qua physical. + cultural point of view + kind of abstract state or point of view + Menelas definition : +"A cultural_change_action takes place in the cultural world, that contains the view_point objects. That is, one is concerned in the world by the social position or rehabilitation of the patient (social_prodecure) or by the administrative_procedure." + +CG Representation : +[cultural_change_action: _x]- + (motive)-->[state_of_mind]-->(content)-->[cultural_state:_cs1] + (motivated_by)-->[state_of_physical_object:_s] + (reason)-->[state_of_mind]-->(content)-->[cultural_state:_cs2] + (descriptive_goal)-->[state_of_physical_object:_t] + % + cultural change action + + + + + + + + + kind of function defined on physical objects. + point of view on cultural functional object defined on physical objects. + point of view on functional object defined on physical objects. + Menelas definition : +"role played by a social subsystem within a more global social system." + cultural role function + point of view on cultural functional object defined on physical objects. + + + + + + + + + CG Representation : +[cultural_treatment: _x]- + (attr)-->[medical_benefit_attr]--(val_qual)-->[therapeutic_val] + (inst_meth)-->[drug_treatment] + % + cultural treatment + + + + + + + + + currently + + + + + + + + + defined by IO temporal object + + + + + + + + + defined by process temporal object + + + + + + + + + dimension + + + + + + + + + discomfort + gêne + incomfort + + + + + + + + + discrete value + + + + + + + + + + distal + + + + + + + + + doctor + + + + + + + + + It refers to pharmaceutical products in the form in which they are marketed for use, typically involving a mixture of active drug components and nondrug components (excipients), along with other non-reusable material that may not be considered either ingredient or packaging. + dosage form + drug presentation + unit dose + forme galénique + + + + + + + + + + + + + + + + + dull pain + douleur sourde + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Pain as a functional sign of ectopic pregnancy + ectopic pregnancy pain + douleur liée à une grossesse ectopique + + + + + + + + + edge + + + + + + + + + subclassOf axiom removed : +Evoque some (EtatInterne_F or LocalPathologicalState) + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + The 17-beta-isomer of estradiol, an aromatized C18 steroid with hydroxyl group at 3-beta- and 17-beta-position. Estradiol-17-beta is the most potent form of mammalian estrogenic steroids. + estradiol + oestradiol + + + + + + + + + Compounds that interact with estrogen receptors in target tissues to bring about the effects similar to those of estradiol. Estrogens stimulate the female reproductive organs, and the development of secondary female sex characteristics. Estrogenic chemicals include natural, synthetic, steroidal, or non-steroidal compounds. + estrogen + oestrogène + + + + + + + + + + + + + + + + + + + + + + + + + female + + + + + + + + + a function for which the functional system is explicit. + idem + kind of abstract objects (physical or intentional) it is an attribute of. + point of view on abstract objects + Menelas definition : +"A functional_object is a primitive function. It can be understood as a point of view on the abstract objects that have such a function." + +CG Representation : +[functional_object: _x]- + (measured_val)-->[quantitative_val] + (qualified_val)-->[qualitative_val] + % + functional object + objet fonctionnel + + + + + + + + + Clinical sign which is described by the patient. + functional sign + signe fonctionnel + + + + + + + + + general practitioner + + + + + + + + + general unit + + + + + + + + + generalized guarding + contracture + défense généralisée + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + FMA definition : +"Developmental entity which is a 3-D immaterial anatomical entity created during an organism's gestation." + developmental space + developmental space + + + + + + + + + patient/part of the patient + physiological state, i.e. normal or not considered as requiring a treatment. + state of the patient, in globality. + According to Menelas, it is a normal or not considered as requiring a treatment state, in globality. + +Menelas CG Representation : +[global_physiological_state: _x]- + (state_of)-->[human_being] + % + global physiological state + état physiologique global + + + + + + + + + Hormones produced by the gonads, including both steroid and peptide hormones. The major steroid hormones include estradiol and progeserone from the ovary, and testosterone from the testis. The major peptide hormones include activins and inhibins. + gonadal hormone + hormone gonadique + + + + + + + + + Steroid hormones produced by the gonads. They stimulate reproductive organs, germ cell maturation, and the secondary sex characteristics in the males and the females. The major sex steroid hormones include estradiol; progesterone; and testosterone. + gonadal steroid hormone + hormone stéroïde gonadique + + + + + + + + + g/dL + gram per decilitre + + + + + + + + + g/L + gram per Litre + gramme par Litre + + + + + + + + + 9691 + cavity of greater sac + greater peritoneal cavity + + + + + + + + + 20679 + subdivision of cavity of greater sac + + + + + + + + + + + + + + + + + beta hCG test result + human chorionic gonadotrophine test result + result of hCG test + + + + + + + + + haemodynamic shock + + + + + + + + + haemorragic shock + + + + + + + + + healthcare professional + + + + + + + + + + + + + + + state of a human being + Menelas definition : +"Principle is: imaging sign the sign on a non human object of a health condition or sign, that is the sign of an internal state." + +CG Representation : +[health_condition: _x]- + (descriptive_result)<--[examination] + (sg_co_occurrence)-->[health_condition:_y] + (diagnosis)-->[internal_state] + (diagnosis_excl)-->[internal_state] + (state_of)-->[human_being] + (radio_interpretation_of)-->[imaging_sign] + (radio_interpretation)<--[imaging_sign] + (caused_by)-->[internal_state] + % + health condition + état de santé + + + + + + + + + heart rate anomaly + + + + + + + + + CG Representation : +[hormonal_function: _x] + hormonal function + + + + + + + + + Chemical substances having a specific regulatory effect on the activity of a certain organ or organs. The term was originally applied to substances secreted by various endocrine glands and transported in the bloodstream to the target organs. It is sometimes extended to include those substances that are not produced by the endocrine glands but that have similar effects. + hormone + hormone + + + + + + + + + kind of cultural systems in which physical objects play role. + point of view on cultural functional object defined on physical objects. + hospital role + roles designed in the functioning of a hospital. + + + + + + + + + MeSH definition : +"Radiography of the uterus and fallopian tubes after the injection of a contrast medium." + hysterosalpingography + hystérosalpingographie + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + changes are desired or intentionnally provoked. + describes change of an intentional object + development or sudden appearance. + intentionally/ unintentionally + Menelas definition : +an intentional change is a change directed by an intention, ie the representation of a goal. It is then intentional in two senses: intention in the common meaning, ie a goal, and intention in the philosophical meaning, ie a representation of something that is not always real. + +Intentional changes are hence possible by means of objects that can have intentions (or representations): that is human_being. + +Intentional changes have hence an agent, the human_being supporting the intention, and a goal, what is purported by the intention. + +According to the purported goal, children are distinguished: changing the physical world (physical_change_action), changing the mental world (mental_change_action), changing the ideal world (social_change_action). For those who like philosophical references, these are the three world of Popper (Physical, Psychological, Cultural). + + +CG Representation : +[intentional_change: _x]- + (agt)-->[human_being] + (rcpt)-->[human_being] + (source)-->[human_being] + (pat)-->[human_being] + (complicated_by)-->[state_of_physical_object] + (descriptive_goal)-->[state_of_physical_object] + (descriptive_result)-->[state_of_physical_object] + (motivated_by)-->[state_of_physical_object] + (not_favoured_by)-->[state_of_physical_object] + (performative_goal)-->[intentional_change] + (motive)-->[state_of_mind] + (reason)-->[state_of_mind] + (has_for_necessary_subaction)-->[intentional_change] + (has_for_optional_subaction)-->[intentional_change] + (necessary_subaction_of)-->[intentional_change] + (optional_subaction_of)-->[intentional_change] + (inst_meth)-->[intentional_change] + (inst_meth_excl)-->[intentional_change] + (inst_tool)-->[physical_object] + (purported_change)<--[intentional_change] + (purported_obj)-->[physical_object] + + intentional change + changement intentionnel + + + + + + + + + change changes states or actions. + change concerns state + changes are desired or intentionnally provoked. + kind of state that is changed. + According to Menelas, it is an intentional change about a state. + +Menelas CG Representation : +[intentional_change_state: _x]- + (reason)-->[state_of_mind:_m]-->(content)-->[state:_y] + (motive)-->[state_of_mind:_n]-->(content)-->[state:_z] + (descriptive_goal)-->[state_of_physical_object:_t]<--(intentional) + (performative_goal)-->[intentional_change:_i]- + (reason)-->[state_of_mind:_m] + (descriptive_goal)-->[state_of_physical_object: _t]% + (descriptive_result)-->[state]<--(real) + (pat)-->[human_being]- + (state_of)<--[state_of_physical_object:_t] + (state_of)<--[state_of_physical_object:_u]-/ + (agt)-->[human_being]- + (state_of)<--[state_of_mind:_m] + (state_of)<--[state_of_mind:_n]% + (motivated_by)-->[state_of_physical_object:_u] + % + intentional change state + + + + + + + + + intentional/physical objects. + two aspects of IO: situated in time, and mental content. +one aspect of IC: modality of an agent regarding its actions. + view point on intentional objects. + viewpoint on abstract object for which an explicit reference system can be exhibited. + Menelas definition : +"The intentional_functional_objects are the functions ensured by the intentional_objects. Basically, they have a role in time, because time is their pathognomonic property. + +defined as the source for all relations that are composed with the label "modality"." + intentional functional object + + + + + + + + + CG Representation : +[intentional_val: _x] + intentional value + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Piece of bent plastic or metal that is inserted through the vagina and the cervix into the cavity of the uterus. + intrauterine contraceptive device + + + + + + + + + + + + + + + + + + + + + + + + + kinetics + + + + + + + + + left + + + + + + + + + + + + + + + + 18592 + 18593 + surface of left ovary + + + + + + + + + + 14714 + + + + + + + + + length unit + unité de longueur + + + + + + + + + A synthetic progestational hormone with actions similar to those of progesterone and about twice as potent as its racemic or (+-)-isomer (norgestrel). It is used for contraception, control of menstrual disorders, and treatment of endometriosis. + levonorgestrel + + + + + + + + + CG Representation : +[life_style_treatment: _x] + --(attr)-->[medical_change_action_attr]--(val)-->[non_invasive] + life-style treatment + + + + + + + + + Menelas definition : +"two-dimensional" + linear + + + + + + + + + + point of view on spatial functional object defined on physical objects. + relative position in 3d on and in an object. + linear relative location + Au sens Menelas : +"localisation sur objet considere lineairement." + + + + + + + + + L + litre + litre + + + + + + + + + + + + + + + 14474 + surface of liver + + + + + + + + + + + + + + + localised guarding + défense + + + + + + + + + male + + + + + + + + + Observation of echographic description of a maternal anatomical structure. + maternal echographic sign + signe échographique maternel + + + + + + + + + medial + + + + + + + + + + medical - physiological change on a patient. + physical change concerning a physical object. + result is in itself an improvement of patient state or not + According to Menelas, it is a medical change on a patient resulting in an improvement of the patient state or not. + +Menelas CG Representation : +[medical_change_action: _x]- + (attr)-->[medical_change_action_attr]--(val_qual) + -->[medical_change_action_val] + (happens_loc)-->[object_area]- + (defines_area)<--[hospital] + (loc_at)-->[town]--(loc_at)-->[country] + %% + medical change action + + + + + + + + + changes take place in a mental state, and concerned human beings qua human. + changes that are intentionally provoked and that bear on state. + human / physical + kind of abstract state, depending on the point of view one may have on physical object: spatial, morphologic, systemic. + Menelas definition : +"mental change is mental transition motivated by a mental state, to reach a goal that is a mental state too. The purpose is to change one's mind about the world, i.e. to increase one's knowledge of it. + +Two kinds of mental change to improve one's knowledge: either you experiment on the world (mental_change_external_action), and the result of the experiment makes you know new things, or you think without performing any actions in the world (mental_change_internal_action)." + + +CG Representation : +[mental_change_action: _x]- + (motive)-->[state_of_mind] + --(content)-->[state_of_mind:_n] + --(content)-->[intentional_object]<--(intentional) + (motivated_by)-->[state_of_physical_object] + (descriptive_result)-->[state_of_mind] + (descriptive_goal)-->[state_of_physical_object] + (performative_goal)-->[physical_intentional_change] + (reason)-->[state_of_mind]-->(content)-->[state_of_mind:_m] + --(content)-->[intentional_object]<--(intentional)% + mental change action + + + + + + + + + changes in the mental state of a human being. + changes that relies on a change in a physical wolrd. + dependency on a physical change. + list of actions. + Menelas definition : +"procedure by which one wants to acquire knowledge and for which one performs physical actions in the real world. Typically, such actions are experiments: one acts in the world not to change the world, by one's knowledge about the world." + +CG Representation : +[mental_change_external_action: _x]- + (reason)-->[state_of_mind:_m]-->(content)-->[state:_y] + (motive)-->[state_of_mind:_n]-->(content)-->[state:_z] + (descriptive_goal)-->[state_of_physical_object:_t]<--(intentional) + (performative_goal)-->[intentional_change:_i]- + (reason)-->[state_of_mind:_m] + (descriptive_goal)-->[state_of_physical_object: _t]% + (descriptive_result)-->[state_of_physical_object]<--(real) + (pat)-->[human_being]- + (state_of)<--[state_of_physical_object:_t] + (state_of)<--[state_of_physical_object:_u]% + (agt)-->[human_being]- + (state_of)<--[state_of_mind:_m] + (state_of)<--[state_of_mind:_n]% + (motivated_by)-->[state_of_physical_object:_u] + % + mental change external action + + + + + + + + + either qualitative categorisation or unit categorisation. + point of view on ideal objects + point of view on functional object + Menalas definition : +"a meta_functional_object is a function ensured by a functional object defined by being a subsystem of another functional object. + +meta_functional_objects must be distinguished from the relation between the functional_objects insofar as the relations express symetric dependencies between the relata while the meta_functional objects express asymetric dependencies between the meta functional object and the functional object that contains it. + +For example, "time_before" is a relation between temporal intervals. However, "at_the_beginning" is a meta_functional_object, that is, the role played by the subinterval with respect to the interval that contains it. While the latter can defined solely, the former can't." + meta-functional object + objet meta-fonctionnel + + + + + + + + + point of view on functional object + point of view on functional object defined on intentional objects. + specificity of the point of view to the considered object; + view point on time situation of intentional objects. + meta-intentional functional object + + + + + + + + + point of view on functional object + point of view on functional object defined on physical objects. + specificity of the point of view to the considered object + meta-physical functional object + + + + + + + + + either qualitative categorisation or unit categorisation. + point of view on ideal objects + view point on a quantitative value + Menelas definition : +"a same value can be categorised according to these two points of view." + meta-quantitative value + + + + + + + + + Description of echographic observation of the uterus + uterus observation + observation de l'utérus + + + + + + + + + 1cm3 = 1mL + mL + millilitre + millilitre + + + + + + + + + millimol per Litre + mmol/L + millimol par litre + + + + + + + + + millimetre + mm + millimètre + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Mirena + commercial name + + + + + + + + + + + + + + + + + objects defined by chemistry, electrically neutral. + A molecule is an electrically neutral group of two or more atoms held together by chemical bonds. + molecule + molécule + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Echographic sign typical of gestational sac in normal pregnancy, helping to distinguish it from pseudo-gestational sac. + normal pregnancy gestational sac observation + signe de sac gestationnel de grossesse normale + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + nurse profession + + + + + + + + + nurse role + + + + + + + + + description bears on morphological aspects. + human being / non human object + Menelas definition : +an imaging examination produced some image as result, interpretation of which provides some health condition information (sign or syndrom) on the patient. Imaging sign are labels for designating some well known configuration or appearance of the image. + +Principle is: imaging sign the sign on a non human object of a health condition or sign, that is the sign of an internal state. + +imaging sign is the result of a imaging. + +CG Representation : +[imaging_sign: _x]- + (descriptive_result)<--[imaging] + (radio_interpretation)-->[health_condition] + (radio_interpretation_of)<--[health_condition] + % + morphological aspect of the producted image of an examination. + imaging sign + signe d'imagerie + signe échographique de grossesse au 1er trimestre + signe échographique de grossesse précoce + + + + + + + + + + + + + + + + + + + + + + Echographic sign allowing to make the diagnosis of a normal intra-uterine pregnancy. + non-ectopic pregnancy sign + + + + + + + + + + + + + + + + + + + + + Echographic sign evoking the presence of an ectopic pregnancy + ectopic pregnancy sign + signe de grossesse ectopique + + + + + + + + + + + + + + + Echographic sign allowing to make the diagnosis of abdominal pregnancy. + abdominal pregnancy sign + + + + + + + + + + + + + + + Echographic sign allowing to make the diagnosis of caesarean section scar pregnancy. + caesarean section scar pregnancy sign + + + + + + + + + + + + + + + Echographic sign allowing to make the diagnosis of cervical pregnancy. + cervical pregnancy sign + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Echographic sign allowing to make the diagnosis of cornual pregnancy. + cornual pregnancy sign + + + + + + + + + + + + + + + Echographic sign allowing to make the diagnosis of interstitial pregnancy. + interstitial pregnancy sign + + + + + + + + + + + + + + + Echographic sign allowing to make the diagnosis of ovarian pregnancy. + ovarian pregnancy sign + + + + + + + + + + + + + + + Echographic sign allowing to make the diagnosis of intramural pregnancy. + intramural pregnancy sign + + + + + + + + + + + + + + + Echographic sign suggesting tubal implantation of pregnancy (tubal ectopic pregnancy). + tubal pregnancy sign + Signe échographique évocateur de grossesse ectopique d'implantation tubaire. + signe de grossesse tubaire + + + + + + + + + + + + + + + + + + + + + partial intramural pregnancy sign + + + + + + + + + + + + + + + + + + + + + complete intramural pregnancy sign + + + + + + + + + 15036722 + Absence of adnexal mass or dilated fallopian tube is a sign that the no adnexa is concerned by the pregnancy. + Gerli, S. et al. Early ultrasonographic diagnosis and laparoscopic treatment of abdominal pregnancy. Eur. J. Obstet. Gynecol. Reprod. Biol. 113, 103–105 (2004) + absence of adnexal mass + absence de masse annexielle + + + + + + + + + Presence of a mass in the adnexal region, in contact with the ovary and distinct from the ovary. + adnexal mass adjacent to ovary + masse annexielle adjacente à l'ovaire + + + + + + + + + Adnexal mass and corpus luteum appear located at the same side (the same adnexa). + adnexal mass and corpus luteum at the same side + masse annexielle et corps jaune du même coté + + + + + + + + + + + + 17940301 + Levine, D. Ectopic pregnancy. Radiology 245, 385–397 (2007) + Mass appears as a gestational sac with an embryonic echo without presence of cardiac activity. + adnexal mass as gestational sac with embryonic echo + masse annexielle sous forme d'un sac gestationnel contenant un écho embryonnaire + + + + + + + + + + + + 18936028 + Lin, E. P., Bhatt, S. & Dogra, V. S. Diagnostic clues to ectopic pregnancy. Radiographics 28, 1661–1671 (2008) + Mass appears as a gestational sac containing an embryo with presence of cardiac activity. + adnexal mass as gestational sac with live embryo + masse annexielle sous forme d'un sac gestationnel contenant un embryon vivant + + + + + + + + + + + + 25161806 + Mass appears as a gestational sac containing only a yolk sac. + Petrides, A., Dinglas, C., Chavez, M., Taylor, S. & Mahboob, S. Revisiting Ectopic Pregnancy: A Pictorial Essay. J Clin Imaging Sci 4, (2014) + adnexal mass as gestational sac with yolk sac + masse annexielle sous forme d'un sac gestationnel contenant une vésicule vitelline + + + + + + + + + + + 25161806 + Petrides, A., Dinglas, C., Chavez, M., Taylor, S. & Mahboob, S. Revisiting Ectopic Pregnancy: A Pictorial Essay. J Clin Imaging Sci 4, (2014) + Visualization of an adnexal mass distinct from ovary is a sign of tubal pregnancy. Such a mass has many different echographic aspects and corresponds to many different gestational structures. + adnexal mass distinct from ovary + masse annexielle distincte de l'ovaire + + + + + + + + + + Trophoblast is visualized as a hyperechoic rounded mass without any central structure. It can sometimes be visualized inside a haematosalpinx. + adnexal rounded hyperechoic mass + masse annexielle hyperéchogène arrondie + + + + + + + + + + + + The gestational sac or the trophoblast sometimes develops in a myometrial defect untill the uterine serosa at the level of the anterior wall of the isthmus, which leads to an impression of distortion of the contour of the uterus. + anterior distortion of uterus serosa + déformation antérieure de la séreuse utérine + + + + + + + + + 12666214 + Inability to displace the gestational sac from its position at the level of the internal os using gentle pressure applied by the transvaginal probe. + Jurkovic, D. et al. First-trimester diagnosis and management of pregnancies implanted into the lower uterine segment Cesarean section scar. Ultrasound Obstet Gynecol 21, 220–227 (2003) + caesaran section scar pregnancy negative sliding organs sign + signe du glissement absent dans un contexte de grossesse sur cicatrice de césarienne + + + + + + + + + + + + + 18393379 + Moschos, E., Sreenarasimhaiah, S. & Twickler, D. M. First-trimester diagnosis of cesarean scar ectopic pregnancy. J Clin Ultrasound 36, 504–511 (2008) + There is a peritrophoblastic flow surrounding the trophoblast shell, with high velocity (peak velocity >20 cm/second) and low impedance (pulsatility index<1). + caesarean section scar pregnancy peritrophoblastic blood flow + flux péritrophoblastique en Doppler au niveau de la cicatrice de césarienne + + + + + + + + + + 24704060 + Fylstra, D. L. Cervical pregnancy: 13 cases treated with suction curettage and balloon tamponade. Am. J. Obstet. Gynecol. 210, 581.e1–5 (2014) + Detection of cardiac activity at the level of gestational sac is a sign of an ongoing pregnancy, therefore a pregnancy implanted in the cervix. + cervical presence of fetal or cardiac activity + présence au niveau du col de l'utérus d'une activité cardiaque foetale ou embryonnaire + + + + + + + + + + + + 24704060 + Fylstra, D. L. Cervical pregnancy: 13 cases treated with suction curettage and balloon tamponade. Am. J. Obstet. Gynecol. 210, 581.e1–5 (2014) + With power Doppler, blood flow is visualized all around the gestational sac in the cervix, unlike the cervical phase of a miscarriage where no blood flow is visualized. + presence of peritrophoblastic blood flow in the cervix + flux péritrophoblastique en Doppler au niveau du col + + + + + + + + + Echographic sign which is characteristic of the cervical phase of miscarriage and also is important to distinguish it from a cervical pregnancy. + cervical phase of miscarriage sign + phase cervicale d'une fausse couche + + + + + + + + + + + + 24704060 + Fylstra, D. L. Cervical pregnancy: 13 cases treated with suction curettage and balloon tamponade. Am. J. Obstet. Gynecol. 210, 581.e1–5 (2014) + Absence of peritrophoblastic blood flow around a gestational sac located in cervical canal is strongly in favor of a miscarriage in its cervical phase. + absence of peritrophoblastic flow in the cervix + absence de flux péri-trophoblastique au niveau du col + + + + + + + + + 24704060 + Absence of cardiac activity is a sign of embryonic or fetal demise. If such a sign is observed in a gestational sac located in the cervical canal it is highly in favor of the cervical phase of a miscarriage. Nevertheless it is not sufficient in itself because it can possibly represent a cervical pregnancy with fetal or embryonic demise. + Fylstra, D. L. Cervical pregnancy: 13 cases treated with suction curettage and balloon tamponade. Am. J. Obstet. Gynecol. 210, 581.e1–5 (2014) + absence of fetal or embryonic cardiac activity + absence d'activité cardiaque foetale ou embryonnaire + + + + + + + + + + 25457572 + Mazzariol, F. S. et al. Pearls and pitfalls in first-trimester obstetric sonography. Clin Imaging 39, 176–185 (2015) + During an abortion in progress, gestational sac usually appears flattened. + flattened gestational sac + sac gestationnel aplati + + + + + + + + + 21292258 + Bianchi, P., Salvatori, M. M., Torcia, F., Cozza, G. & Mossa, B. Cervical pregnancy. Fertil. Steril. 95, 2123.e3–4 (2011) + When pressure is applied to the cervix using the probe, the gestational sac slides against the endocervical canal. + positive cervical sliding organs sign + signe du glissement positif au niveau du col de l'utérus + + + + + + + + + + 18096743 + Sherer, D. M. et al. Three-dimensional sonographic findings of a cervical pregnancy. J Ultrasound Med 27, 155–158 (2008) + Internal cervical os is open and dilated, since gestational sac, coming from uterine cavity, has passed beyond. + open internal cervical os + orifice interne du col de l'utérus ouvert + + + + + + + + + + closed internal cervical os + definition under review + orifice interne du col de l'utérus fermé + + + + + + + + + + clots in uterine cavity + definition under review + caillots dans la cavité utérine + + + + + + + + + + continuity between gestational sac and cervical canal + definition under review + continuité entre le sac gestationnel et le canal cervical + + + + + + + + + 17587215 + Corpus luteum, if there is one, is visualized really close to gestational sac. + Jurkovic, D. & Mavrelos, D. Catch me if you scan: ultrasound diagnosis of ectopic pregnancy. Ultrasound Obstet Gynecol 30, 1–7 (2007) + corpus luteum adjacent to gestational sac + corps jaune adjacent au sac gestationnel + + + + + + + + + + + + + 23804343 & 8956581 + Doubilet, P. M. & Benson, C. B. Double sac sign and intradecidual sign in early pregnancy: interobserver reliability and frequency of occurrence. J Ultrasound Med 32, 1207–1214 (2013) + +Parvey, H. R., Dubinsky, T. J., Johnston, D. A. & Maklad, N. F. The chorionic rim and low-impedance intrauterine arterial flow in the diagnosis of early intrauterine pregnancy: evaluation of efficacy. AJR Am J Roentgenol 167, 1479–1485 (1996) + Visualized as an intrauterine fluid collection (anechogenic area) surrounded by two concentric echogenic rings. The inner ring consists of rim of chorion and trophoblast surrounded by decidua capsularis, the outer ring consists of decidua parietalis lining the uterine cavity. + +This sign can be seen at about 5 menstrual weeks. + double decidual ring + double sac sign + signe du double anneau + + + + + + + + + + + + 17940301 + Levine, D. Ectopic pregnancy. Radiology 245, 385–397 (2007) + Wall of the mass representing ectopic pregnancy is more echogenic than wall of corpus luteum when one is seen, this helps distinguish between the two which one represents an ectopic pregnancy. + ectopic pregnancy wall more echogenic than corpus luteum wall + paroi de la grossesse ectopique plus échogène que le corps jaune + + + + + + + + + + The embryo appears outside the endometrial cavity. + embryo visible outside the uterine cavity + embryon visible à l'extérieur de la cavité utérine + + + + + + + + + + 15902112 + Characteristic midline uterine cavity echo, which is interposed between two adjacent hypoechoic layers of endometrium. +Aspect identical to the proliferative endometrium of the normal menstrual cycle. + Hammoud, A. O. et al. The role of sonographic endometrial patterns and endometrial thickness in the differential diagnosis of ectopic pregnancy. Am. J. Obstet. Gynecol. 192, 1370–1375 (2005) + endometrial trilaminar pattern + aspect en triple feuillet de l'endomètre + + + + + + + + + + + 18936028 + Lin, E. P., Bhatt, S. & Dogra, V. S. Diagnostic clues to ectopic pregnancy. Radiographics 28, 1661–1671 (2008) + The fluid collection is located within the uterine cavity, hence it follows its contour. + fluid collection located centrally within the uterine cavity + présence de fluide dans la cavité utérine + + + + + + + + + + + 21292258 + Bianchi, P., Salvatori, M. M., Torcia, F., Cozza, G. & Mossa, B. Cervical pregnancy. Fertil. Steril. 95, 2123.e3–4 (2011) + Gestational sac is located below internal cevical os, ie at the point of insertion of uterine arteries, unlikely gestational sac in caesarean scar pregnancy, located at the same level as internal os. + gestational sac below internal cervical os + sac gestationnel situé en-dessous de l'orifice interne du col + + + + + + + + + + 17587215 + Jurkovic, D. & Mavrelos, D. Catch me if you scan: ultrasound diagnosis of ectopic pregnancy. Ultrasound Obstet Gynecol 30, 1–7 (2007) + Abdominal ectopics are usually fixed deep within the pelvis, which helps to differentiaite them from cornual pregnancies, typically mobile. + gestational sac fixed within pelvis + sac gestationnel fixé dans le pelvis + + + + + + + + + + + + The gestational sac appears located inside the anterior myometrium and the uterine cavity + gestational sac inside anterior myometrium and uterine cavity + sac gestationnel implanté dans la cavité utérine et le myomètre antérieur + + + + + + + + + definition under review + gestational sac with embryo inside anterior myometrium and uterine cavity + sac gestationnel contenant un embryon implanté dans la cavité utérine et le myomètre antérieur + + + + + + + + + definition under review + gestational sac with yolk sac inside anterior myometrium and uterine cavity + sac gestationnel contenant une vésicule vitelline implanté dans la cavité utérine et le myomètre + + + + + + + + + + 17587215 + Gestational sac is located above internal cervical os, located at point of insertion of uterine arteries. If not, there is a suspicion of caesarean section scar pregnancy and cervical pregnancy + Jurkovic, D. & Mavrelos, D. Catch me if you scan: ultrasound diagnosis of ectopic pregnancy. Ultrasound Obstet Gynecol 30, 1–7 (2007) + gestational sac located above internal cervical os + sac gestationnel situé au-dessus de l'orifice interne du col de l'utérus + + + + + + + + + + 24960482 + Warda, H., Mamik, M. M., Ashraf, M. & Abuzeid, M. I. Interstitial ectopic pregnancy: conservative surgical management. JSLS 18, 197–203 (2014) + Gestational sac located eccentrically, distant from at least 1cm with regard to the most lateral wall of uterine cavity. + gestational sac located eccentricaly from uterine cavity + sac gestationnel à distance de la cavité utérine + + + + + + + + + + The gestational sac appears located medially to the interstitial portion of the tube. + gestational sac located medially to tubal interstitial portion + sac gestationel situé en position médiane par rapport à la portion interstitielle de la trompe utérine + + + + + + + + + + 17763478 + Being located in a rudimentary horn, gestational sac is visualized totally outside the main uterine part, and is movable relative to it. + Mavrelos, D. et al. Ultrasound diagnosis of ectopic pregnancy in the non-communicating horn of a unicornuate uterus (cornual pregnancy). Ultrasound Obstet Gynecol 30, 765–770 (2007) + gestational sac is mobile and separate from uterus + sac gestationnel mobile et séparé de l'utérus + + + + + + + + + + + + 12666214 + Gestational sac or trophoblast is located at the level of internal cervical os i.e above the cervical canal, which allows to make difference with cervical pregnancy in which gestational sac is located below internal cervical os. + Jurkovic, D. et al. First-trimester diagnosis and management of pregnancies implanted into the lower uterine segment Cesarean section scar. Ultrasound Obstet Gynecol 21, 220–227 (2003) + gestational sac or trophoblast located at the level of internal cervical os + sac gestationnel ou trophoblaste situé au niveau de l'orifice interne du col + + + + + + + + + + + + 12666214 + Moschos, E., Sreenarasimhaiah, S. & Twickler, D. M. First-trimester diagnosis of cesarean scar ectopic pregnancy. J Clin Ultrasound 36, 504–511 (2008) + Trophoblast or gestational sac located at the presumed site of the previous low transverse hysterotomy scar beneath the utero-vesical fold, the area between the bladder and the anterior uterine wall. + gestational sac or trophoblast in a myometrial defect in previous caesarean section scar pregnancy site + sac gestationnel ou trophoblaste dans une lacune myométriale au niveau d'une ancienne cicatrice de césarienne + + + + + + + + + + The gestational sac appears outside the endometrial cavity. + gestational sac outside the uterine cavity + sac gestationnel en-dehors de la cavité utérine + + + + + + + + + + 20544869 + Ong, C., Su, L.-L., Chia, D., Choolani, M. & Biswas, A. Sonographic diagnosis and successful medical management of an intramural ectopic pregnancy. J Clin Ultrasound 38, 320–324 (2010) + Completely surrounded by myometrium, gestational sac appears entirely separated from endometrium and endometrial cavity. + gestational sac separated from endometrium + sac gestationnel séparé de l'endomètre + + + + + + + + + + 22064787 + Being completely outside of the uterus, gestational sac is visualized separate from it. + Kar, S. Primary abdominal pregnancy following intra-uterine insemination. J Hum Reprod Sci 4, 95–99 (2011) + gestational sac separate from uterus + sac gestationnel séparé de l'utérus + + + + + + + + + + 19918376 + Yildizhan, R. et al. Primary abdominal ectopic pregnancy: a case report. Cases J 2, 8485 (2009) + Visualization of bowel loop really close to gestational sac is a sign of the intra-peritoneal location of the pregnancy. + gestational sac surrounded by a loop of bowel + sac gestationnel entouré d'anses intestinales + + + + + + + + + + + 15661954 + The presence of myometrial tissue around the gestational sac can be sen in non comunicating rudimentary horn pregnancy. + Tsafrir, A., Rojansky, N., Sela, H. Y., Gomori, J. M. & Nadjari, M. Rudimentary horn pregnancy: first-trimester prerupture sonographic diagnosis and confirmation by magnetic resonance imaging. J Ultrasound Med 24, 219–223 (2005) + gestational sac surrounded by myometrium + sac gestationnel entouré de myomètre + + + + + + + + + + + 25709640 + Goyal, L. D., Tondon, R., Goel, P. & Sehgal, A. Ovarian ectopic pregnancy: A 10 years’ experience and review of literature. Iran J Reprod Med 12, 825–830 (2014) + Gestational sac is surrounded by ovarian cortex i.e follicles or corpus luteum. + gestational sac surrounded by ovarian cortex + sac gestationnel entouré de cortex ovarien + + + + + + + + + gestational sac is visualized at the level of a uterine horn but implantation really occurs within interstitial portion of fallopian tube which is located in the horn. This is not a sign of cornual pregnancy. + gestational sac visualized at the level of uterine horn + sac gestationnel visualisé au niveau de la corne utérine + + + + + + + + + + + + 19562051 + Rastogi, R., GL, M., Rastogi, N. & Rastogi, V. Interstitial ectopic pregnancy: A rare and difficult clinicosonographic diagnosis. J Hum Reprod Sci 1, 81–82 (2008) + Gestational sac is surrounded by a thin myometrial and asymmetric layer, less than 5mm. Myometrial mantle is less thick than in cornual pregnancy. On lateral aspect of gestational sac, myometrial mantle is the thickest even sometimes absent. + gestational sac surrounded by a thin myometrial layer + sac gestationnel entouré d'une faible épaisseur de myomètre + + + + + + + + + + 17940301 + Corpus from the Early Pregnancy and Gynaecology Assessment Unit, Pr Jurkovic, King’s College Hospital, London. + Levine, D. Ectopic pregnancy. Radiology 245, 385–397 (2007) + Mass appears as a complex, inhomogenous conglomerate, with different type of echogenicity. + haematosalpinx presence + présence d'un hématosalpinx + + + + + + + + + + + 23375906 + Kirk, E., McDonald, K., Rees, J. & Govind, A. Intramural ectopic pregnancy: a case and review of the literature. Eur. J. Obstet. Gynecol. Reprod. Biol. 168, 129–133 (2013) + Intramural pregnancy is sometimes visualized as a complex heterogenous most hyperechogenic mass located in the myometrium, and appears higly vascular with Doppler mode. + +This aspect may look like degenerative myoma or in some cases sarcoma. + highly vascular heterogenous hyperechogenic mass in myometrium + masse hétérogène, hyperéchogène et très vascularisée intra-myométriale + + + + + + + + + + 15655698 + Cervical canal is dilated with pregnancy implantation, whic results in a hourglass-shaped uterus (dilated cervix represents one part of the hourglass). + Hassiakos, D., Bakas, P. & Creatsas, G. Cervical pregnancy treated with transvaginal ultrasound-guided intra-amniotic instillation of methotrexate. Arch. Gynecol. Obstet. 271, 69–72 (2005) + hourglass-shaped uterus + utérus en sablier + + + + + + + + + 16601010 + Gevaert, O. et al. Predicting the outcome of pregnancies of unknown location: Bayesian networks with expert prior information compared to logistic regression. Hum. Reprod. 21, 1824–1831 (2006) + Pressure with the ultrasound probe and abdominal palpation may not demonstrate free movement between gestational sac and ovary. + + ovarian negative sliding organs sign + signe du glissement négatif dans un contexte de grossesse ovarienne + + + + + + + + + ectopic pregnancy, whatever is its location, appears as a inhomogenous conglomerate in which it is not possible to identify any structure + inhomogenous conglomerate + masse hétérogène + + + + + + + + + + 17587215 + Endometrial midline echo appears intact and is visualizable along its entire length. + Jurkovic, D. & Mavrelos, D. Catch me if you scan: ultrasound diagnosis of ectopic pregnancy. Ultrasound Obstet Gynecol 30, 1–7 (2007) + intact endometrial midline echo + ligne de vacuité utérine intacte + + + + + + + + + + + 18936028 + Lin, E. P., Bhatt, S. & Dogra, V. S. Diagnostic clues to ectopic pregnancy. Radiographics 28, 1661–1671 (2008) + Interstitial portion of Fallopian tube is an echogenic line that extends into the upper regions of the uterine horn and borders the margin of the intramural gestational sac, this line is adjoining the lateral aspect of uterine cavity and gestational sac. +Therefore there is a narrow communication between gestational sac and uterine cavity, unlike in cornual pregnancy. + interstitial line sign + signe de la ligne interstitielle + + + + + + + + + + + + Caesaran section scar pregnancy is also a pregnancy located within the myometrium, but one of its feature is that it is visualized at the level of internal cervical os, (cf. CaesareanSectionScarPregnancySign) therefore being located above internal cervical os helps distinguish intramural corporeal pregnancy from caesarean section scar pregnancy. + intramural gestational sac located above internal cervical os + sac gestationnel intra-mural au-dessus de l'orifice interne du col de l'utérus + + + + + + + + + + + + 24034539 + Bannon, K., Fernandez, C., Rojas, D., Levine, E. M. & Locher, S. Diagnosis and management of intramural ectopic pregnancy. J Minim Invasive Gynecol 20, 697–700 (2013) + Presence of blood flow all around the possible pregnancy mass in the myometrium is in favor of such a nature of this mass. + intramural peritrophoblastic blood flow presence + présence intra-murale de flux péritrophoblastique + + + + + + + + + + definition under review + intraperitoneal fluid + épanchement intra-péritonéal + + + + + + + + + definition under review + hemoperitoneum + hémopéritoine + + + + + + + + + + + 23470809 + In the absence of a gestational sac, pregnancy can be visualized as a mass with +irregularly shaped hypoechoic areas, which resemble the lacunae in placenta previa. These lacunae-like areas are richly perfused in color Doppler mode. + Sekiguchi, A., Okuda, N., Kawabata, I., Nakai, A. & Takeshita, T. Ultrasound detection of lacunae-like image of a cesarean scar pregnancy in the first trimester. J Nippon Med Sch 80, 70–73 (2013). + lacuna-like image + image lacunaire + + + + + + + + + 12551793 + Szabó, I., Csabay, L., Belics, Z., Fekete, T. & Papp, Z. Assessment of uterine circulation in ectopic pregnancy by transvaginal color Doppler. Eur. J. Obstet. Gynecol. Reprod. Biol. 106, 203–208 (2003) + The tubal branch of the ascending arch of the uterine artery is visualised at the region adjacent to the isthmic zone of the Fallopian tube with color Doppler. Flow velocity waveforms are obtained by pulsed Doppler and the RI and PI calculated on both sides. +Lower RI and PI are detectable on the pregnancy side than on the contralateral side. + + lower tubal artery Resistance Index and Pulsatility Index on pregnancy side + index de résistance et de pulsatilité plus faible du côté de la grossesse + + + + + + + + + + 18393379 + Balloon-shaped deformation of the lower uterine segment, observed in a transabdominal sagittal section of uterus. + Moschos, E., Sreenarasimhaiah, S. & Twickler, D. M. First-trimester diagnosis of cesarean scar ectopic pregnancy. J Clin Ultrasound 36, 504–511 (2008) + lower uterine segment ballooning + ballonisation de la partie inférieure de l'utérus + + + + + + + + + 11316311 + Wherry, K. L., Dubinsky, T. J., Waitches, G. M., Richardson, M. L. & Reed, S. Low-resistance endometrial arterial flow in the exclusion of ectopic pregnancy revisited. J Ultrasound Med 20, 335–342 (2001). + Presence of endometrial low-resistance flow has a negative predictive value of 97% for excluding ectopic pregnancy. +It is consistent with trophoblastic flow when resistive index (IR) is less than 0,6. +This flow is obtained with a cursor completely within the endometrium. +Thermal index has to be kept to less than 1.0, consistently with as-low-as-reasonably-achievable principles. + low-resistance endometrial arterial flow + index de résistance du flux endométrial faible + + + + + + + + + 21292258 + Bianchi, P., Salvatori, M. M., Torcia, F., Cozza, G. & Mossa, B. Cervical pregnancy. Fertil. Steril. 95, 2123.e3–4 (2011) + Inability to displace the gestational sac in the endocervical canal with pressure applied to the cervix using the probe. + negative cervical sliding organs sign + signe du glissement négatif dans un contexte de grossesse cervicale + + + + + + + + + + + 15661954 + Tsafrir, A., Rojansky, N., Sela, H. Y., Gomori, J. M. & Nadjari, M. Rudimentary horn pregnancy: first-trimester prerupture sonographic diagnosis and confirmation by magnetic resonance imaging. J Ultrasound Med 24, 219–223 (2005) + Absence of communication between the lumen of the rudimentary horn and the cervical canal, ie the rest of endometrial cavity is a proof that the horn is non communicating and that the pregnancy is not located in the main uterine cavity. This sign is essential to distinguish from pregnancy in a bicornuate uterus for which there is a wide communication between gestational sac and the rest of the uterine cavity. + sign of non communicating rudimentary horn + signe de la corne rudimentaire non-communicante + + + + + + + + + Echographic sign which allows to make the diagnosis of pseudo-gestational sac which is a thick decidual reaction surrounding intrauterine fluid, inside the uterine cavity. + pseudo-gestational sac sign + signe de pseudo-sac gestationnel + + + + + + + + + + + 18936028 + Lin, E. P., Bhatt, S. & Dogra, V. S. Diagnostic clues to ectopic pregnancy. Radiographics 28, 1661–1671 (2008) + Since pseudogestational sac is located within the endometrial cavity, endometrial midline echo is not intact and cannot be visualized along its entire lenght. + non intact endometrial midline echo + ligne de vacuité utérine non intacte + + + + + + + + + + + 12899484 + Richardson, A. et al. Accuracy of first trimester ultrasound in the diagnosis of an intrauterine pregnancy prior to the development of the yolk sac: a systematic review and meta-analysis. Ultrasound Obstet Gynecol n/a–n/a (2014) + There is only a single ring around the fluid collection which represents the decidual reaction. + pseudo-sac surrounded by a single layer of tissue + image sacculaire bordée par une seule ligne + + + + + + + + + + + definition under review + normal gestational sac with yolk sac + sac gestationnel intra-utérin contenant une vésicule vitelline + + + + + + + + + + + definition under review + normal gestational sac with embryonic echo + sac gestationnel intra-utérin contenant un écho embryonnaire + + + + + + + + + + Unlike in caesarean section scar pregnancy, anterior myometrium, in cervical pregnancy, has a normal thickness. + normal thickness of anterior myometrium + 25457572 + Mazzariol, F. S. et al. Pearls and pitfalls in first-trimester obstetric sonography. Clin Imaging 39, 176–185 (2015) + épaisseur normale du myomètre antérieur + + + + + + + + + + + + 15625140 + Comstock, C., Huston, K. & Lee, W. The ultrasonographic appearance of ovarian ectopic pregnancies. Obstet Gynecol 105, 42–45 (2005) + Presence of an embryo inside the anechoic center of the ovarian structure allows to make the diagnosis of an ovarian pregnancy instead of a corpus luteum. + presence of embryo in the ovary + présence d'un embryon au sein de l'ovaire + + + + + + + + + + + 15625140 + Comstock, C., Huston, K. & Lee, W. The ultrasonographic appearance of ovarian ectopic pregnancies. Obstet Gynecol 105, 42–45 (2005) + Presence of a yolk sac inside the anechoic center of the ovarian structure helps to make the diagnosis of an ovarian pregnancy instead of a corpus luteum. + presence of yolk sac in the ovary + présence d'une vésicule vitelline au sein de l'ovaire + + + + + + + + + + 12551793 + Szabó, I., Csabay, L., Belics, Z., Fekete, T. & Papp, Z. Assessment of uterine circulation in ectopic pregnancy by transvaginal color Doppler. Eur. J. Obstet. Gynecol. Reprod. Biol. 106, 203–208 (2003) + Resistance Index and Pulsatility Index difference higher in tubal arteries than in uterine arteries + Uterine artery is identified at the level of the internal cervical ostium with color Doppler. Pulsed Doppler gate is placed over the vessel and low velocity waveforms is recorded. The transducer is positioned so that the angle between the pulsed Doppler beam and the vessel is close to 0. The mean resistance index and pulsatility index are calculated for both uterine arteries when at least five sequential, good quality waveforms are obtained. +The tubal branch of the ascending arch of the uterine artery is visualised at the region adjacent to the isthmic zone of the Fallopian tube. Flow velocity waveforms are obtained by pulsed Doppler and the RI and PI calculated on both sides. +Differences between sides are significantly higher in the tubal arteries than in the uterine arteries. + + + + + + + + + + + 11340958 + Terzić, M., Stimec, B. & Maricić, S. Laparoscopic management of consecutive ovarian pregnancy in a patient with infertility. Zentralbl Gynakol 123, 162–164 (2001) + Visualization of a wide echogenic ring-like thick-walled structure with an internal lucent area on the ovarian surface. + ring-like echogenic structure + structure hyperéchogène en anneau + + + + + + + + + + + 18936028 + Lin, E. P., Bhatt, S. & Dogra, V. S. Diagnostic clues to ectopic pregnancy. Radiographics 28, 1661–1671 (2008) + Presence of a peripheral hypervascularity of the adnexal mass with color Doppler or power Doppler modes and with high-velocity and low-resistance flow seen with pulsed Doppler mode. + ring of fire sign + signe de l'anneau de feu + + + + + + + + + 17587215 + 21337662 + Jayaprakasan, K. et al. Prevalence of uterine anomalies and their impact on early pregnancy in women conceiving after assisted reproduction treatment. Ultrasound Obstet Gynecol 37, 727–732 (2011) + +Jurkovic, D. & Mavrelos, D. Catch me if you scan: ultrasound diagnosis of ectopic pregnancy. Ultrasound Obstet Gynecol 30, 1–7 (2007) + Presence of only one interstitial portion of Fallopian Tube is a sign of unicornuate uterus. Interstitial portions of the uterine tubes are visualizable in a transverse section of the fundus, as thin hyperechoic lines extending from the lateral aspect of the uterine cavity through the myometrium toward the uterine serosa. + presence of only one interstitial portion of uterine tube + présence d'une seule portion interstitielle de trompe utérine + + + + + + + + + + + + + + 24567459 + Moschos, E., Wells, C. E. & Twickler, D. M. Biometric sonographic findings of abnormally adherent trophoblastic implantations on cesarean delivery scars. J Ultrasound Med 33, 475–481 (2014) + The anterior trophoblastic border distance from the uterine serosa is significantly smaller in cesarean scar pregnancies than in normal pregnancies on a transvaginal sagittal image of the uterus. + smaller trophoblastic border distance to the anterior uterine serosa + distance réduite entre le bord du trophoblaste et la séreuse utérine antérieure + + + + + + + + + + + + + 23417903 + Extension of trophoblast into the myometrium is visualized at the level of the endometrial-myometrial junction which can be well studied with threedimensional surface rendering mode. + Memtsa, M., Jamil, A., Sebire, N., Jauniaux, E. & Jurkovic, D. Diagnosis and management of intramural ectopic pregnancy. Ultrasound Obstet Gynecol 42, 359–362 (2013) + trophoblast breaching endometrial-myometrial junction + invasion trophoblastique de la jonction endomètre-myomètre + + + + + + + + + + + 23375906 + Kirk, E., McDonald, K., Rees, J. & Govind, A. Intramural ectopic pregnancy: a case and review of the literature. Eur. J. Obstet. Gynecol. Reprod. Biol. 168, 129–133 (2013) + Trophoblastic tissue appears entirely surounded by myometrium. + trophoblast completely confined to myometrium + trophoblaste totalement confiné dans le myomètre + + + + + + + + + + Trophoblastic tissue appears outside de uterine cavity. + trophoblast visible outside the uterine cavity + trophoblaste visible à l'extérieur de la cavité utérine + + + + + + + + + + 14756354 + Stein, M. W., Ricci, Z. J., Novak, L., Roberts, J. H. & Koenigsberg, M. Sonographic comparison of the tubal ring of ectopic pregnancy with the corpus luteum. J Ultrasound Med 23, 57–62 (2004) + Hyperechoic thick-walled ring around the adnexal mass. + bagel sign + tubal ring sign + signe de l'anneau tubaire + + + + + + + + + + + 17940301 + Ectopic pregnancy appears as an echogenic ringlike mass with an anechoic center. + Levine, D. Ectopic pregnancy. Radiology 245, 385–397 (2007) + tubal ring without central identifying feature + anneau tubaire sans structure centrale particulière + + + + + + + + + 16601010 + Gevaert, O. et al. Predicting the outcome of pregnancies of unknown location: Bayesian networks with expert prior information compared to logistic regression. Hum. Reprod. 21, 1824–1831 (2006) + blob sign + gentle pressure with the ultrasound probe combined with abdominal palpation may demonstrate free movement between the adnexal mass and the ovary + presence of tubal sliding organs sign + signe du glissement positif dans un contexte de grossesse tubaire + + + + + + + + + + + 17763478 + Mavrelos, D. et al. Ultrasound diagnosis of ectopic pregnancy in the non-communicating horn of a unicornuate uterus (cornual pregnancy). Ultrasound Obstet Gynecol 30, 765–770 (2007) + Presence of a vascular pedicle adjoining the gestational sac and the lateral aspect of the empty unicornuate uterus. + vascular pedicle between gestational sac and uterus + pédicule vasculaire entre le sac gestationnel et l'utérus + + + + + + + + + definition under review + vasular pedicle from upper part of cervix to cervical canal + pédicule vasculaire entre la partie supérieure du col et le sac gestationnel + + + + + + + + + + + With color Doppler mode it is possible to visualize a vessel coming from the uterine cavity at the level of body of uterus and going to the gestational sac which is in the Isthmus, in the caesarean scar site. + vessel to gestational sac from upper uterine cavity + vaisseau entre le sac gestationnel et la cavité utérine + + + + + + + + + + definition under review + yolk sac visible outside the uterine cavity + vésicule vitelline visible en-dehors de la cavité utérine + + + + + + + + + 23804343 + Doubilet, P. M. & Benson, C. B. Double sac sign and intradecidual sign in early pregnancy: interobserver reliability and frequency of occurrence. J Ultrasound Med 32, 1207–1214 (2013) + Intrauterine fluid collection (gestational sac) with an echogenic rim, embedded into a thickened decidua, located eccentricaly to one side of a thin echogenic line corresponding to the collapsed uterine cavity. + +The gestational sac is visualizad located eccentricaly within uterine cavity and below endometrial surface. + +This sign can be observed as early as 4 weeks and a half. + intradecidual sac sign + intradecidual sign + signe du sac intra-décidual + + + + + + + + + + + 17763478 + Mavrelos, D. et al. Ultrasound diagnosis of ectopic pregnancy in the non-communicating horn of a unicornuate uterus (cornual pregnancy). Ultrasound Obstet Gynecol 30, 765–770 (2007) + Visualization of a wide communication between gestarional sac and uterine carvity is the sign of a pregnancy located in the uterine cavity, this sign is important to distinguish intra-uterine pregnancy in an anomalous uterus (ex : intra-uterine pregnancy in a bicornuate uterus) from an ectopic pregnancy (ex : cornual pregnancy or interstitial pregnancy). + wide communication between uterine cavity and gestational sac + large communication entre le sac gestationnel et la cavité utétrine + + + + + + + + + definition under review + echographic sign + signe échographique + + + + + + + + + + + + + + + 2D ultrasound sign + Ultrasound sign visible in two dimentional mode ultrasound. + sign visible in two-dimensional mode + signe visible en mode bidimensionnel + + + + + + + + + + + + + + + definition under review + sign visible in three-dimensional mode + sign visible on 3D ultrasound + signe visible en mode tridimensionnel + + + + + + + + + + + + + + + color Doppler sign + definition under review + signe visible en Doppler couleur + + + + + + + + + + + + + + + definition under review + power Doppler sign + signe visible en Doppler energie + + + + + + + + + + + + + + + definition under review + sign visible in pulsed Doppler mode + signe visible en Doppler pulsé + + + + + + + + + + + + + + + + + + anatomical element + + + + + + + + + Anatomical Pseudo Object + + + + + + + + + + + + + + + 80223 + amnion + amnios + + + + + + + + + 305902 + amniotic sac + poche amniotique + + + + + + + + + + + + + + + 80224 + chorion + chorion + + + + + + + + + 305900 + chorionic sac + sac chorionique + + + + + + + + + Conceptus is a generic concept, representing any biological material wich resulting from zygote, for example embryo or fetus are a part of conceptus, but also trophoblast or gestational sac. + +This concept here is relevant by the fact that it corresponds to the other generic concept of gestational mass which is the echographic sign that represents conceptus. + + conception product + conceptus + + + + + + + + + 85538 + decidua + endometrium of the pregnant uterus, all of which, except the deepest layer, is shed at parturition. + décidue + + + + + + + + + 86477 + decidua basalis + decidua portion directly underlying the gestational sac and attached to the myometrium + decidua basalis + + + + + + + + + 86478 + decidua capsularis + decidua portion directly overlying the gestational sac and facing the uterine cavity. + decidua capsularis + + + + + + + + + 86479 + decidua parietalis + decidua portion lining the uterus elsewhere than at the site of attachment of the gestational sac. + decidua parietalis + + + + + + + + + gestational sac + sac gestationnel + + + + + + + + + 87180 + yolk sac + vésicule vitelline + + + + + + + + + 20394 + human body + corps humain + + + + + + + + + 67812 + female human body + corps humain femelle + + + + + + + + + 67811 + male human body + corpus humain mâle + + + + + + + + + 72291 + Diploid male germ cell (46 chorosomes, 2 chromatids) + primitive sperm cell + spermatogonium + spermatogonie + + + + + + + + + FMA definition : +"Anatomical structure, which has as its parts a heterogeneous collection of organs, organ parts, cells, cell parts or body part subdivisions and associated spaces that are connected to one another; does not constitute a cell part, cell, tissue, organ, organ system or organ system subdivision, cardinal body part, or body part subdivision. Examples: joint, adnexa of uterus, root of lung, renal pedicle, back." + anaomical cluster + regroupement anatomique + + + + + + + + + 86103 + region of organ component + région d'un composant d'organe + + + + + + + + + 9647 + FMA definition : +" Anatomical cluster which has as its parts one or more anatomical structures surrounding an anatomical compartment space and the contents of that space. Examples: mediastinum, anterior compartment of forearm, renal sinus, interscalene triangle." + anatomical compartment + compartiment anatomique + + + + + + + + + 58903 + compartment of trunk + compartiment du tronc + + + + + + + + + 12236 + body compartment subdivision + subdivision d'un compartiment du corps + + + + + + + + + 61194 + abdominopelvic compartment subdivision + compartment of subdivision of abdomen + subdivision of abdominal compartment + subdivision du compartiment abdominal + + + + + + + + + 850409 + retroperitoneal compartment + compartiment rétropéritonéal + + + + + + + + + FMA definition : +"Anatomical cluster which has as its direct parts all or some members of two or more organ subclasses and one or more organ part subclasses which are grouped together according to some shared attributes. Examples: larynx, internal ear, pharynx." + heterogeneous anatomical cluster + regroupement anatomique hétérogène + + + + + + + + + + + + + + + 259223 + left side of pelvic wall + paroi pelvienne gauche + + + + + + + + + 10430 + wall of pelvis + paroi pelvienne + + + + + + + + + 259278 + content of pelvis + contenu du pelvis + + + + + + + + + + + + + + + 259221 + right side of pelvic wall + paroi pelvienne droite + + + + + + + + + + + + + + + 265256 + adnexa of uterus + uterine adnexa + annexe utérine + + + + + + + + + 259284 + content of female pelvis + contenu du pelvis féminin + + + + + + + + + 302826 + left adnexa of uterus + left uterine adnexa + annexe utérine gauche + + + + + + + + + 302824 + right adnexa of uterus + right uterine adnexa + anexe utérine droite + + + + + + + + + 45733 + neck of organ + col d'organe + + + + + + + + + + + + + + + 17740 + cervix of uterus + col de l'utérus + cervix uteri + + + + + + + + + + + + + + + 18302 + zone of uterine tube + zone de la trompe utérine + + + + + + + + + + + + + + + 17559 + zone of uterus + zone de l'utérus + + + + + + + + + + + + + + + + + + + + + 17739 + body of uterus + corps de l'utérus + + + + + + + + + + + + + + + + + + + + + 17561 + fundus of uterus + fundus de l'utérus + + + + + + + + + 77053 + uterine horn + corne de l'utérus + + + + + + + + + + + + + + + + + + + + + 17752 + lower uterine segment + uterine isthmus + isthme de l'utérus + + + + + + + + + 323668 + left uterine horn + corne utérine gauche + + + + + + + + + 323667 + right uterine horn + corne utérine droite + + + + + + + + + + + + + + + 18305 + ampulla + ampoule tubaire + + + + + + + + + 18308 + fimbria of uterine tube + fimbrial portion + pavilon tubaire + + + + + + + + + 18309 + tubal interstitial portion + portion interstitielle de la trompe utérine + + + + + + + + + 18306 + Isthmus of fallopian tube + tubal isthmus + isthme tubaire + + + + + + + + + 24008 + zone of long bone + zone d'un os long + + + + + + + + + + + + + + + 18619 + corpus luteum + corps jaune + + + + + + + + + 61109 + cortex + cortex + + + + + + + + + + + + + + + 18613 + ovarian cortex + cortex de l'ovaire + cortex ovarii + + + + + + + + + 18640 + follicle of ovary + follicule ovarien + + + + + + + + + 7144 + mesentery + mésentère + mesenterium + + + + + + + + + 16516 + MeSH definition : +"A broad fold of peritoneum that extends from the side of the uterus to the wall of the pelvis." + broad ligament + broad ligament of uterus + broad uterine ligament + ligament large de l'utérus + ligamentum latum uteri + + + + + + + + + 82485 + FMA definition : +"Organ component which is a part of a wall of an organ or a membranous layer of an organ." + organ component layer + couche + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 17742 + endometrium + endomètre + + + + + + + + + 86491 + layer of endometrium + couche de l'endomètre + + + + + + + + + 86493 + functional layer of endometrium + outer layer of endometrium + couche fonctionnelle de l'endomètre + + + + + + + + + 86492 + basal layer of endometrium + junction between endometrium and myometrium + couche basale de l'endomètre + + + + + + + + + + + + + + + 17743 + myometrium + myomètre + + + + + + + + + + + + + + + + + + + + + + + + + myometrium of wall of body of uterus + myomètre de la paroi du corps de l'utérus + + + + + + + + + + + + + + + + + + + + + + + + + myometrium of wall of fundus of uterus + myomètre de la paroi du fundus + + + + + + + + + + + + + + + + + + + + + + + + + myometrium of wall of uterine isthmus + myomètre de la paroi de l'isthme utérin + + + + + + + + + 45637 + serosa + séreuse + + + + + + + + + 85423 + serosa of organ + séreuse d'un organe + + + + + + + + + 77097 + peritoneal serosa + serous coat of peritoneum + + + + + + + + + + + + + + + 18316 + serosa of uterine tube + séreuse de la trompe utérine + + + + + + + + + + + + + + + 18383 + serosa of left uterine tube + séreuse de la trompe utérine gauche + + + + + + + + + + + + + + + 18382 + serosa of right uterine tube + séreuse de la trompe utérine droite + + + + + + + + + + + + + + + 15811 + serosa of liver + séreuse hépatique + + + + + + + + + + + + + + + 15848 + serosa of spleen + séreuse splénique + + + + + + + + + 17744 + serosa of uterus + séreuse utérine + + + + + + + + + 15932 + serosa of urinary bladder + séreuse vésicale + + + + + + + + + 82482 + organ wall + paroi d'un organe + + + + + + + + + 9581 + serous membrane + membrane séreuse + + + + + + + + + 258853 + FMA definition : +"Serous membrane, which has as its parts a parietal serous membrane and a visceral serous membrane that together forms a serous sac that encloses a serous cavity. Examples: pleura, serous pericardium, peritoneum." + viscus serous membrane + membrase séreuse composée de deux feuillets + + + + + + + + + + + + + + + 9584 + peritoneum + wall of peritoneal sac + péritoine + + + + + + + + + + + + + + + + + + + + + 18303 + wall of uterine tube + paroi de la trompe utérine + + + + + + + + + + + + + + + + + + + + + 18500 + left uterine tube wall + paroi de la trompe utérine gauche + + + + + + + + + + + + + + + + + + + + + 18499 + right uterine tube wall + paroi de la trompe utérine droite + + + + + + + + + + + + + + + + + + + + + 15902 + wall of urinary bladder + paroi vésicale + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 17560 + wall of uterus + paroi utérine + + + + + + + + + + + + + + + 9580 + greater omentum + grand omentum + + + + + + + + + 77054 + segment of cervix + segment du col de l'utérus + + + + + + + + + 86485 + endocervix + endocol + + + + + + + + + 86484 + ectocervix + exocol + + + + + + + + + 306412 + FMA definition : +"segment of an organ with organ cavity, which consists of an arborizing set of tubular organ parts, the walls of which are continuous and surround a continuous lumen. Examples: systemic arterial tree (organ), tracheobronchial tree, biliary tree." + segment of hollow tree organ + segment d'un organe arborescent + + + + + + + + + 50722 + region of vascular tree organ + région d'un organe vasculaire arborescent + + + + + + + + + 312599 + segment of blood vessel tree organ + segment d'un vaisseau sanguin + + + + + + + + + 86187 + arborial segment of arterial tree organ + segment d'un organe artériel arborescent + + + + + + + + + 50720 + artery + artère + + + + + + + + + 66464 + systemic artery + artère systémique + + + + + + + + + 69796 + branch of internal iliac artery + branche de l'artère iliaque interne + + + + + + + + + 18829 + uterine artery + artère utérine + arteria uterina + + + + + + + + + 18875 + subdivision of uterine artery + subdivision de l'artère utérine + + + + + + + + + + + + + + + 18877 + tubal branch of uterine artery + branche tubaire de l'artère utérine + + + + + + + + + + + + + + + 20939 + uterine cervical part of uterine artery + portion cervicale de l'artère utérine + + + + + + + + + 20941 + uterine cervical part of left uterine artery + portion cervicale de l'artère utérine gauche + + + + + + + + + 20940 + uterine cervical part of right uterine artery + portion cervicale de l'artère utérine droite + + + + + + + + + 70107 + tubal branch of left uterine artery + branche tubaire de l'artère utérine gauche + + + + + + + + + 70106 + tubal branch of right uterine artery + branche tubaire de l'artère utérine droite + + + + + + + + + 18831 + left uterine artery + artère utérine gauche + + + + + + + + + 18830 + right uterine artery + artère utérine droite + + + + + + + + + 256237 + FMA definition : +"Organ segment which is a regional part of neuraxis. Examples: brain, brainstem, spinal cord." + segment of neuraxis + segment du système nerveux central + + + + + + + + + + + + + + + 18492 + left ampulla + ampoule tubaire gauche + + + + + + + + + 18491 + right ampulla + ampoule tubaire droite + + + + + + + + + + + + + + + 18498 + left fimbrial portion + pavillon tubaire gauche + + + + + + + + + + + + + + + 18497 + right fimbrial portion + pavillon tubaire droit + + + + + + + + + + + + + + + 18488 + left tubal interstitial portion + portion interstitielle de la trompe utérine gauche + + + + + + + + + + + + + + + 18487 + right tubal interstitial portion + portion interstitielle de la trompe utérine droite + + + + + + + + + + + + + + + + + + + + + 18494 + left tubal isthmus + isthme tubaire gauche + + + + + + + + + 18493 + right tubal isthmus + isthme tubaire droit + + + + + + + + + + + + + + + 19755 + region of parietal peritoneum + région du péritoine pariétal + + + + + + + + + + + + + + + + + + + + + 24604 + abdominal parietal peritoneum + péritoine pariétal abdominal + + + + + + + + + + + + + + + 19756 + anterior part of abdominal peritoneum + partie antérieure du péritoine abdominal + + + + + + + + + 24605 + pelvic parietal peritoneum + péritoine pariétal pelvien + + + + + + + + + 20609 + peritoneum of left side of pelvic diaphragm + peritoneum of left side of pelvic floor + péritoine du côté gauche du plancher pelvien + + + + + + + + + 20606 + peritoneum of right side of pelvic diaphragm + peritoneum of right side of pelvic floor + péritoine du côté droit du plancher pelvien + + + + + + + + + 20602 + parietal peritoneum of pelvic floor + pelvic diaphragm peritoneum + peritoneum of pelvic diaphragm + peritoneum of pelvic floor + péritoine du plancher pelvien + + + + + + + + + + + + + + + 19757 + parietal peritoneum of posterior abdominal wall + peritoneum of posterior abdominal wall + posterior part of abdominal peritoneum + partie postérieure du péritoine abdominal + + + + + + + + + 19754 + region of peritoneum + région du péritoine + + + + + + + + + + + + + + + + + + + + + 21451 + parietal peritoneum + péritoine pariétal + + + + + + + + + + + + + + + 14703 + visceral peritoneum + péritoine viscéral + peritoneum viscerale + + + + + + + + + + + + + + + 86099 + region of wall of urinary bladder + région de la paroi vésicale + + + + + + + + + 15904 + posterior wall of urinary bladder + paroi vésicale postérieure + + + + + + + + + + + + + + + 17753 + wall of zone of uterus + paroi d'une région de l'utérus + + + + + + + + + 224876 + anterior wall of uterus + paroi antérieure de l'utérus + + + + + + + + + 224882 + anterior wall of zone of uterus + paroi antérieure d'une région de l'utérus + + + + + + + + + + + + + + + 224864 + anterior wall of body of uterus + paroi antérieure du corps de l'utérus + + + + + + + + + + + + + + + 224872 + anterior wall of cervix of uterus + paroi antérieure du col de l'utérus + + + + + + + + + + + + + + + 224860 + anterior wall of fundus of uterus + paroi antérieure du fundus de l'utérus + + + + + + + + + + + + + + + 224868 + anterior wall of uterine isthmus + paroi antérieure de l'isthme + + + + + + + + + lateral wall of uterus + paroi latérale de l'utérus + + + + + + + + + left lateral wall of uterus + paroi latérale gauche de l'utérus + + + + + + + + + right lateral wall of uterus + paroi latérale droite de l'utérus + + + + + + + + + lateral wall of zone of uterus + paroi latérale d'une région de l'utérus + + + + + + + + + left lateral wall of zone of uterus + paroi latérale gauche d'une région de l'utérus + + + + + + + + + right lateral wall of zone of uterus + paroi latérale droite d'une région de l'utérus + + + + + + + + + + + + + + + right lateral wall of body of uterus + paroi latérale droite du corps de l'utérus + + + + + + + + + + + + + + + right lateral wall of cervix of uterus + paroi latérale droite du col de l'utérus + + + + + + + + + + + + + + + right lateral wall of uterine isthmus + paroi latérale droite de l'isthme utérin + + + + + + + + + + + + + + + left lateral wall of body of uterus + paroi latérale gauche du corps de l'utérus + + + + + + + + + + + + + + + left lateral wall of cervix of uterus + paroi latérale gauche du col de l'utérus + + + + + + + + + + + + + + + left lateral wall of uterine isthmus + paroi latérale gauche de l'isthme utérin + + + + + + + + + 224884 + posterior wall of zone of uterus + paroi postérieure d'une région de l'utérus + + + + + + + + + + + + + + + 224866 + posterior wall of body of uterus + paroi postérieure du corps de l'utérus + + + + + + + + + + + + + + + 224874 + posterior wall of cervix of uterus + paroi postérieure du col de l'utérus + + + + + + + + + + + + + + + 224862 + posterior wall of fundus of uterus + paroi postérieure du fundus de l'utérus + + + + + + + + + + + + + + + 224870 + posterior wall of uterine isthmus + paroi postérieure de l'isthme utérin + + + + + + + + + 224878 + posterior wall of uterus + paroi postérieure de l'utérus + + + + + + + + + + + + + + + 17755 + wall of body of uterus + paroi postérieure du corps de l'utérus + + + + + + + + + + + + + + + 17757 + cervical wall + wall of cervix of uterus + paroi du col de l'utérus + + + + + + + + + + + + + + + 17754 + wall of fundus of uterus + paroi du fundus + + + + + + + + + + + + + + + 17756 + wall of uterine isthmus + paroi de l'sithme utérin + + + + + + + + + + + + + + + + 18484 + left uterine tube + trompe utérine gauche + + + + + + + + + + + + + + + 18483 + right uterine tube + trompe utérine droite + + + + + + + + + 9689 + serous sac + sac séreux + + + + + + + + + + + + + + + + + + + + + 9908 + peritoneal sac + sac péritonéal + + + + + + + + + 15571 + right ureter + uretère droit + + + + + + + + + 15572 + left ureter + uretère gauche + + + + + + + + + 55663 + corticomedullary organ + organe corticomédullaire + + + + + + + + + + + + + + + + + + + + + + + + + + + 7209 + ovary + ovaire + + + + + + + + + + + + + + + + + + + + + + 7214 + left ovary + ovaire gauche + + + + + + + + + + + + + + + + + + + + + 7213 + right ovary + ovaire droit + + + + + + + + + + + + + + + + + + + + + 7196 + spleen + rate + + + + + + + + + 55662 + lobular organ + organe lobulaire + + + + + + + + + + + + + + + + + + + + + 7197 + liver + foie + + + + + + + + + 7198 + pancreas + pancréas + + + + + + + + + 9661 + shoulder + épaule + + + + + + + + + + + 33643 + right shoulder + épaule gauche + + + + + + + + + 33642 + right shoulder + épaule droite + + + + + + + + + 25054 + subdivision of trunk + subdivision du tronc + + + + + + + + + 259102 + subdivision of trunk proper + subdivision du tronc propre + + + + + + + + + 20357 + subdivision of abdomen + subdivision de l'abdomen + + + + + + + + + 20389 + epigastrium + épigastre + + + + + + + + + 20390 + hypochondrium + Hypochondre + + + + + + + + + 20392 + left hypochondrium + hypochondre gauche + + + + + + + + + 20391 + right hypochondrium + hypochondre droit + + + + + + + + + 14602 + hypogastrium + hypogastre + + + + + + + + + 24040 + inguinal part of abdomen + fosse iliaque + + + + + + + + + + 24037 + left inguinal part of abdomen + fosse iliaque gauche + + + + + + + + + 24036 + right inguinal part of abdomen + fosse iliaque droite + + + + + + + + + + + + + + + 9578 + pelvis + pelvis + + + + + + + + + 61683 + periumbilical part of abdomen + région périombilicale + + + + + + + + + 83041 + FMA definition : +"Developmental organism which has as its parts trophoblast, embryoblast and blastocystic cavity." + blastocyst + blastocyste + + + + + + + + + + + + + + + 18359 + uterine tube lumen + lumière de la trompe utérine + + + + + + + + + CavityOfSerousSac + serous sac cavity + + + + + + + + + + + + + + + 14704 + FMA definition : +"Cavity of serous sac surrounded by the peritoneum." + peritoneal cavity + cavité péritonéale + cavitas peritonealis + + + + + + + + + 20422 + cervical os + ostium uteri + + + + + + + + + + + + + + + + + + + + + 18123 + tubal ostium + uterotubal orifice + ostium tubaire + + + + + + + + + + + + + + + 63941 + amniotic cavity + cavité amniotique + + + + + + + + + + + + + + + 293133 + chorion cavity + chorionic cavity + + + + + + + + + 63943 + extraembryonic celom + extraembryonic coelom + coelome extra-embryonnaire + + + + + + + + + 63942 + cavity of yolk sac + + + + + + + + + 17747 + internal cervical os + + + + + + + + + 76836 + external cervical os + + + + + + + + + + + + + + + + 18467 + left uterine tube lumen + lumière de la trompe utérine gauche + + + + + + + + + + + + + + + 18466 + right uterine tube lumen + lumière de la trompe utérine droite + + + + + + + + + + + + + + + 15924 + cavity of urinary bladder + cavité vésicale + + + + + + + + + 19982 + vaginal lumen + lumière vaginale + + + + + + + + + + + + + + + 17746 + lumen of cervix of uterus + lumière du col de l'utérus + + + + + + + + + 14715 + hepatorenal recess + morison pouch + cul-de-sac de Morison + récessus hépato-rénal + + + + + + + + + + 14728 + pouch of Douglas + rectouterine pouch + rectouterine space + cul-de-sac de Douglas + cul-de-sac recto-utérin + excavatio rectouterina + + + + + + + + + 14729 + uterovesical pouch + vesicouterine pouch + cul-de-sac vésico-utérin + Excavatio vesicouterina + + + + + + + + + + + + + + + + 18125 + left tubal ostium + ostium tubaire gauche + + + + + + + + + + + + + + + 18124 + right tubal ostium + ostium tubaire droit + + + + + + + + + Diminished or absent ability of a female to achieve conception. + Infertility is a global pathological state, resulting from many pathologies. Tubal infertility resulting for example from bilateral fallopian tube, is obviously a risk factor of ectopic implantation. But epidemiological studies have shown that infertility from undiagnosed etiology was also a risk factor for ectopic implantation. Therefore broad-sens infertility is considered being a risk factor of ectopic implantation. + infertility + infertilité + + + + + + + + + Smoking refers to the pathological state of dependency and to the pathological state resulting from smoking poisoning. +It does not only refers to the act of smoking, as a sign of the states above. + smoking + tabagisme + + + + + + + + + + + + + + + + + + + + Method to block fertility temporarily or permanently. + contraception method + méthode de contraception + + + + + + + + + + Methods of contraception in which physical, chemical, or biological means are used to prevent the sperm from reaching the fertilizable ovum. + barrier contraception method + + + + + + + + + condom use + usage de préservatif + + + + + + + + + + Use of a contraceptive device consisting of a piece of bent plastic that is inserted through the vagina and the cervix into the cavity of the uterus. This device contains a progestin, released regularly within the uterine cavity. Effects are : thickening of cervical mucus, endometrial atrophy, and toxicity for spermatozoids. + hormonal intrauterine contraceptive device use + usage d'un dispositif intra-utérin hormonal + + + + + + + + + + Use of a non hormonal contraceptive device consisting of a piece of bent plastic or metal that is inserted through the vagina and the cervix into the cavity of the uterus. The major effect is preventing implantation of the blastocyst within the endometrium. + non hormonal intrauterine contraceptive device use + usage d'un dispositif intra-utérin non hormonal + + + + + + + + + Intrauterine contraceptive devices that depend on the release of metallic copper. + copper intrauterine contraceptive device use + usage d'un dispositif intra-utérin au cuivre + + + + + + + + + + Contraception method that acts on the endocrine system. Almost all methods are composed of steroid hormones. + hormonal contraception method + méthode de contraception hormonale + + + + + + + + + + Contraception method which does not require any medication or medical device or surgical treatment. + natural contraception method + méthode de contraception naturelle + + + + + + + + + A class of natural contraceptive methods in which sexual abstinence is practiced a few days before and after the estimated day of ovulation, during the fertile phase. Methods for determining the fertile period or ovulation detection are based on various physiological indicators, such as circulating hormones, changes in cervical mucus, and the basal body temperature. + natural family planning method + méthode naturelle de planning familial + + + + + + + + + Sexual intercourse deliberately interrupted by withdrawal of the penis from the vagina prior to ejaculation. + withdrawal method + retrait + + + + + + + + + Absence of contraception. + no contraception + aucune + + + + + + + + + + Procedure that render the female sterile by interrupting the flow in the fallopian tube. This procedure is generally surgical, and may also use chemicals or physical means. + tubal sterilization + stérilisation tubaire + + + + + + + + + deduced or observed patient state. + state of a human being + state of patient, deduced by means of health conditions. + Menelas definition : +"Principle is: imaging sign the sign on a non human object of a health condition or sign, that is the sign of an internal state." + +CG Representation : +[internal_state: _x]- + (cause_of)-->[health_condition] + (side_effect)-->[internal_state] + (diagnosis)<--[health_condition] + (diagnosis_excl)<--[health_condition] + (etiology)-->[internal_state] + (origin)-->[internal_state] + (antecedent)-->[internal_state] + (family_antecedent)-->[internal_state] + (personal_antecedent)-->[internal_state] + (complication)-->[internal_state] + (risk_factor)-->[internal_state] + (family_risk_factor)-->[internal_state] + (personal_risk_factor)-->[internal_state] + % + internal state + état interne + + + + + + + + + + + + + + + + + + + + + definition under review + local post-operative state + état post-opératoire local + + + + + + + + + Uterine postoperative scar, usually located at the level of the anterior wall of the lower uterine segment or isthmus but not always, resulting from one or several previous caesarean section. + caesarean section scar + cicatrice de césarienne + + + + + + + + + + + + + + + Caesarean scar is located at the level of the anterior wall of the body of uterus, resulting from a anterior corporeal caesarean section. + anterior wall of body of uterus caesarean section scar + corporeal caesarean section scar + cicatrice de césarienne corporéale + + + + + + + + + + + + + + + + + + + + + Caesarean scar is located at the level of the anterior wall of the uterine isthmus or lower uterine segment, resulting from a transvers low segment caesarean section, which is the most frequent type of caesarean section. + anterior wall of uterine isthmus caesarean section scar + transverse low segment caesarean section + cicatrice de césarienne segmentaire + + + + + + + + + + + + + + + + + + + + + + definition under review + uterine tube absence + absence de trompe utérine + + + + + + + + + + + + + + + definition under review + left uterine tube absence + absence de la trompe utérine gauche + + + + + + + + + + + + + + + definition under review + right uterine tube absence + absence de la trompe utérine droite + + + + + + + + + + + + + + + definition under review + uterus absence + absence d'utérus + + + + + + + + + + + + + + + + + + + + + + pathological state, i.e. requiring a treatment. + pathological/physiological. + state of patient, deduced by means of health conditions. + state of patient, or of a part of the patient. + According to Menelas, it is a state of a patient or of a part of a patient, considered as requiring a treatment. + +Menelas CG Representation : +[pathological_state: _x]- + (consists_in)-->[pathological] + (consists_in)-->[abnormal] + % + pathological state + état pathologique + + + + + + + + + pathological state, i.e. requiring a treatment. + patient/part of the patient + state of the patient, in globality. + According to menelas, it is a state of a patient in globality, requiring a treatment. + +Menelas CG Representation : +[global_pathological_state: _x]- + (state_of)-->[human_being:_pat] + (disease_of)-->[human_being:_pat] + (attr)-->[disease_origin_attr]--(val_qual)-->[disease_origin_val] + ;hereditary, acquired, congenital + (timed_during)-->[temporal_interval] + --(temporal_role)-->[disease_period] + % + global pathological sate + état pathologique global + + + + + + + + + + + + + + + + + + + + + + + + + + + + pathological state, i.e. requiring a treatment. + patiente/part of the patient + state of a part of the patient, but not of the patient + According to Menelas, it is a state of a part of the patient but not of the patient, requiring treatment. + + local pathological state + état pathologique local + + + + + + + + + + + + + + + + + + + + + Presence of a great amount of blood in the peritoneal cavity, caused by an intra-abdominal bleeding. + haematoperitoneum + hémopéritoine + + + + + + + + + + + + + + + + + + + + + + + definition under review + pathological state of the uterine tube + état pathologique de la trompe utérine + + + + + + + + + Obstruction can be bilateral or unilateral, this diagnoses is resulting from a typical image observed in a hysterosalpingography, or during a laparoscopy with a permeability test. +It is a risk factor for tubal pregnancy. + uterine tube obstruction + obstruction de la trompe utérine + + + + + + + + + It corresponds to a bleeding inside the lumen and the wall of the Fallopian tube with clots. + heamatosalpinx + hématosalpinx + + + + + + + + + + + + + + + + + + + + + State of the uterine tube resulting from a tubal rupture. + ruptured of the uterine tube + trompe utérine rompue + + + + + + + + + + + + + + + Any pathological state concerning the uterus + pathological state of the uterus + état pathologique de l'utérus + + + + + + + + + + + + + + + Adenomyosis is due to the extension of endometrial tissue into the myometrium. It usually occurs in women in their reproductive years and may result in a diffusely enlarged uterus with ectopic and benign endometrial glands and stroma. +Presence of foci of adenmyosis is a risk factor of intramural ectopic pregnancy. + focus of adenomyosis presence + présence de foyer d'adénomyose + + + + + + + + + The uterus is divided into two cavities by an anteroposterior septum. + septate uterus + utérus cloisonné + + + + + + + + + Fibroid is a benign tumor derived from smooth muscle tissue, which is developping from myometrium. Its size is quite variable, and it can be located anywhere in the uterus. + uterine fibroid presence + uterine leiomyoma presence + présence de fibrome utérin + présence de léiomyome utérin + + + + + + + + + + + + + + + + + + + + + A spectrum of inflammation involving the female upper genital tract and the supporting tissues. It is usually caused by an ascending infection of organisms from the endocervix. Infection may be confined to the uterus (endometritis), the fallopian tubes (salpingitis), the ovaries (oophoritis), the supporting ligaments (parametritis), or may involve several of the above uterine appendages. Such inflammation can lead to functional impairment and infertility. + PID + pelvic inflammatory disease + + + + + + + + + inflammation of the peritoneum lining the pelvic part of the abdominal cavity, surrounding the uterus and the fallopian tubes as the result of infectious, autoimmune, or chemical processes. + pelviperitonitis + pelvipéritonite + + + + + + + + + Diseases due to or propagated by sexual contact. + STD + sexually transmitted disease + IST + infections sexuellement transmissibles + + + + + + + + + + + + + + + + Sexually transmitted infection with the bacteria Chlamydiae Trachomatis which begins at the level of the lower genital tract (cervix) and which possibly extends to the upper genital tract (uterus, fallopian tubes). It is an important cause of pelvic inflammator disease. + genital chlamydiae trachomatis infection + infection génitale à chlamydiae trachomatis + + + + + + + + + + + + + + + Sexually transmitted infection with the bacteria Neisseria Gonorrhoeae which begins at the level of the lower genital tract (cervix) and which possibly extends to the upper genital tract (uterus, fallopian tubes). It is an important cause of pelvic inflammator disease. + genital Neisseria Gonorrhoeae Infection + infection génitale à Gonocoque + infection génitale à Neisseria Gonorrhoeae + + + + + + + + + physiological state, i.e. normal or not considered as requiring a treatment. + state of patient, deduced by means of health conditions. + state of patient, or of a part of the patient. + According to Menelas, it is the state of a patient or of a part of a patient, wich is normal or not considered as requiring a treatment. + +Menelas CG Representation : +[physiological_state: _x]- + (consists_in)-->[normal] + % + physiological state + état physiologique + + + + + + + + + + + + + + + + + + + + + + + + + + + Woman physical state which is the consequence of the fertilization of an ovum by a spermatozoon. This state is neither physiological nor pathological. + pregnancy + grossesse + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + pathological state, i.e. requiring a treatment. + A potentially life-threatening condition in which embryo implantation occurs outside the cavity of the uterus. + +It is a global pathological state, because it is the state of pregnancy which is considered here and not the local pathological process. + ectopic pregnancy + grossesse ectopique + + + + + + + + + + + + + + 1 + + + + + + + 1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + 1 + + + Multiple pregnancy with embryo implantation occuring at different locations, involving at least both a normal implantation within the endometrium of the uterine cavity and an ectopic implantation. +Therefore, the presence of both signs of ectopic pregancy and signs of normal pregnancy is suspicious of heterotopic pregnancy. + heterotopic pregnancy + grossesse hétérotopique + + + + + + + + + Ectopic pregnancy in which implantation occurs totally outside the uterus. + extra-uterine ectopic pregnancy + grossesse ectopique en-dehors de l'utérus + + + + + + + + + Pregnancy implantation occurs within the uterus but not inside the endometrial cavity. + intra-uterine ectopic pregnancy + grossesse ectopique dans l'utérus + + + + + + + + + + + + + + + 18936028 + Lin, E. P., Bhatt, S. & Dogra, V. S. Diagnostic clues to ectopic pregnancy. Radiographics 28, 1661–1671 (2008) + In caesarean section scar pregnancy, implantation takes place within the scar of a prior cesarean section, separate from the endometrial cavity. + caesarean section scar pregnancy + grossesse sur cicatrice de césarienne + + + + + + + + + + + + + + + 18936028 + Cervical pregnancy occurs when implantation takes place within the endocervical canal. + Lin, E. P., Bhatt, S. & Dogra, V. S. Diagnostic clues to ectopic pregnancy. Radiographics 28, 1661–1671 (2008) + cervical pregnancy + grossesse cervicale + + + + + + + + + + + + + + + A type of pregnancy in which the embryo implantation occurs in a rudimentary horn of a malformed uterus with a rudimentary non-communicating horn. + cornual pregnancy + rudimentary horn pregnancy + grossesse cornuale + + + + + + + + + + + + + + + 24960482 + An interstitial pregnancy is the kind of pregnancy for which gestational sac implants within the proximal, intramural portion of the fallopian tube that is enveloped by the myometrium. + Warda, H., Mamik, M. M., Ashraf, M. & Abuzeid, M. I. Interstitial ectopic pregnancy: conservative surgical management. JSLS 18, 197–203 (2014) + interstitial pregnancy + grossesse interstitielle + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 23417903 + Memtsa, M., Jamil, A., Sebire, N., Jauniaux, E. & Jurkovic, D. Diagnosis and management of intramural ectopic pregnancy. Ultrasound Obstet Gynecol 42, 359–362 (2013) + In this type of pregnancy, trophoblast invasion extends beyond the endometrial–myometrial junction and the conceptus is partially or completely located within the myometrium of the uterine corpus. + +Implantation happens at the level of a myometrial defect resulting from surgical procedures (myomectmy, curettage, hysteroscopy...), or within foci of adenomyosis. + +It can also result from a difficult embryo transfer following in vitro fertilization, resulting in the creation of false passage. + corporeal intramural pregnancy + grossesse intramurale au niveau du corps de l'utérus + + + + + + + + + 23417903 + Memtsa, M., Jamil, A., Sebire, N., Jauniaux, E. & Jurkovic, D. Diagnosis and management of intramural ectopic pregnancy. Ultrasound Obstet Gynecol 42, 359–362 (2013) + Conceptus is entirely embedded within the myometrium. + complete intramural pregnancy + grossesse intra-murale complète + + + + + + + + + + + + + + + + + + + + + 23417903 + Memtsa, M., Jamil, A., Sebire, N., Jauniaux, E. & Jurkovic, D. Diagnosis and management of intramural ectopic pregnancy. Ultrasound Obstet Gynecol 42, 359–362 (2013) + Conceptus is partially surrounded by myometrium. + partial intramural pregnancy + grossesse intra-murale partielle + + + + + + + + + 22177188 + A type of ectopic pregnancy in which the embryo implants in the abdominal cavity instead of in the endometrium of the uterus. + +Less than 1% of ectopic pregnancies are implanted within the abdominal cavity. + +The pathogenesis of abdominal implantation is controversial. Many are the result of secondary nidation within the peritoneal cavity after tubal abortion. + +True primary abdominal implantation must satisfy the criteria of Studdiford : +- normal fallopian tubes with no evidence of recent or remote trauma +- absence of any uteroperitoneal fistula +- presence of a pregnancy related exclusively to the peritoneal surface and early enough to eliminate the possibility of secondary implantation after a primary nidation within the tube. + +The most common abdominal implantation site is the posterior cul-de-sac, followed by the mesosalpinx, the omentum, the bowel and its mesentery, and the peritoneum of the pelvic and abdominal walls, including the anterior cul-de-sac. + +However, pregnancy implantation can occur anywhere in the abdomen, even elsewhere in the body, including the retroperitoneal space, the liver, the spleen, the appendix,... + Fylstra, D. L. Ectopic pregnancy not within the (distal) fallopian tube: etiology, diagnosis, and treatment. Am. J. Obstet. Gynecol. 206, 289–299 (2012). + abdominal pregnancy + grossesse abdominale + + + + + + + + + + + + + + + A type of pregnancy in which embryo implantation occurs in an ovary instead of in the uterine cavity. + ovarian pregnancy + grossesse ovarienne + + + + + + + + + 12902001 + Any pregnancy which happens after hysterectomy. The pregnancy is necessarily ectopic and is possibly tubal, abdominal, ovarian or retroperitoneal, depending on the type of surgery the patient has had. +Pregnancy in this situation is always spontaneous because assisted reproduction procedures can not be performed. + Binder, D. S. Thirteen-week abdominal pregnancy after hysterectomy. J Emerg Med 25, 159–161 (2003) + post-hysterectomy ectopic pregnancy + grossesse ectopique après hystérectomie + + + + + + + + + + + + + + + 17701805 + Meire, I., van Heusden, A., Roukema, M. S., Niezen, R. A. & Dhont, M. A retroperitoneal pregnancy of an anencephalic fetus. J Obstet Gynaecol 27, 518–519 (2007) + Pregnancy implantation occurs within retroperitoneal space, and pregnancy often has close relation with great vessels (common iliac artery bifurcation, renal vessels, inferior vena cava, bifurcation of the aorta...). + retroperitoneal pregnancy + grossesse rétropéritonéale + + + + + + + + + + + + + + + The most common (>96%) type of ectopic pregnancy in which the extrauterine embryo implantation occurs in the fallopian tube, usually in the ampullary region where fertilization takes place. + tubal pregnancy + grossesse tubaire + + + + + + + + + Inter-Adnexal hysterectomy is a surgical procedure during which adnexae are not removed. Therefore pregnancy implantation following such a procedure can still be tubal. + ectopic pregnancy after inter-adnexal hysterectomy + grossesse ectopique après hystérectomie interannexielle + + + + + + + + + Hysterectomy associated with salpingectomy is a surgical procedure during which both fallopian tubes are removed. Therefore pregnancy implantation following such a procedure cannot be tubal. + ectopic pregnancy after hysterectomy associated with salpingectomy + grossesse ectopique après hystérectomie avec salpingectomie + + + + + + + + + Pregnancy implanted on the surface of one of the two broad ligaments. + broad ligament pregnancy + grossesse implanté au niveau du ligament large + + + + + + + + + + + + 22177188 + Fylstra, D. L. Ectopic pregnancy not within the (distal) fallopian tube: etiology, diagnosis, and treatment. Am. J. Obstet. Gynecol. 206, 289–299 (2012). + Primary abdominal pregnancy is the type of abdominal pregnancy for which implantation occurs in the peritoneal surface in the first place. + +True primary abdominal implantation must satisfy the criteria of Studdiford : +- normal fallopian tubes with no evidence of recent or remote trauma +- absence of any uteroperitoneal fistula +- presence of a pregnancy related exclusively to the peritoneal surface and early enough to eliminate the possibility of secondary implantation after a primary nidation within the tube. + primary abdominal pregnancy + grossesse abdominale primitive + + + + + + + + + + + + 22177188 + Fylstra, D. L. Ectopic pregnancy not within the (distal) fallopian tube: etiology, diagnosis, and treatment. Am. J. Obstet. Gynecol. 206, 289–299 (2012). + Secondary abdominal pregnancy is the type of abdominal pregnancy for which abdominal implantation is in fact a secondary nidation within the peritoneal cavity after tubal abortion. + secondary abdominal pregnancy + grossesse abdominale secondaire + + + + + + + + + 17957059 + Yagil, Y., Beck-Razi, N., Amit, A., Kerner, H. & Gaitini, D. Splenic pregnancy: the role of abdominal imaging. J Ultrasound Med 26, 1629–1632 (2007) + Pregnancy implantation occurs within the upper part of the abdominal cavity, for example within greater omentum, liver or spleen. + upper abdominal pregnancy + grossesse implantée au niveau de la partie supérieure de l'abdomen + + + + + + + + + 10541123 + Delabrousse, E., Site, O., Le Mouel, A., Riethmuller, D. & Kastler, B. Intrahepatic pregnancy: sonography and CT findings. AJR Am J Roentgenol 173, 1377–1378 (1999) + Implantation of the pregnancy within the surface of the liver. In most cases, the attachemennt site is the lower surface of the right lobe of the liver. + hepatic pregnancy + grossesse hépatique + + + + + + + + + 15640259 + Onan, M. A. et al. Primary omental pregnancy: case report. Hum. Reprod. 20, 807–809 (2005) + Pregnancy implantation occurs within the great omentum. + omental pregnancy + grossesse implantée au niveau de l'épiploon + + + + + + + + + 17957059 + Yagil, Y., Beck-Razi, N., Amit, A., Kerner, H. & Gaitini, D. Splenic pregnancy: the role of abdominal imaging. J Ultrasound Med 26, 1629–1632 (2007) + Pregnancy implantation occurs within the spleen. + splenic pregnancy + grossesse splénique + + + + + + + + + + + + + + + + A normal pregnancy is implanted within the endometrium of the uterine cavity. + intra-uterine pregnancy + non ectopic intra-uterine pregnancy + non ectopic pregnancy + grossesse non ectopique dans l'utérus + + + + + + + + + Congenital malformation of the uterus, consisting in the presence of only one normal horn. The abnormal horn is considered as rudimentary. + unicornuate uterus + utérus unicorne + + + + + + + + + In that specific malformation, the lumen of the rudimentary horn does not communicate with the main uterine cavity. + unicornuate uterus with a non-communicating rudimentary horn + utérus unicorne avec une corne rudimentaire non communicante + + + + + + + + + + + + + + + morphological observation + + + + + + + + + + + + + + + + + + + + definition under review + normal morphological observation + observation morphologique normale + + + + + + + + + + + + + + + + + + + + abnormal morphological observation + definition under review + observation morphologique anormale + + + + + + + + + + + + + + + definition under review + observation of the corpus luteum + observation du corps jaune + + + + + + + + + + + + + + + definition under review + observation of the embryo + observation de l'embryon + + + + + + + + + + + + + + + definition under review + observation of the interstitial portion of the uterine tube + observation de la portion interstitielle de la trompe utérine + + + + + + + + + + + + + + + definition under review + observation of the gestational sac + observation du sac gestationnel + + + + + + + + + + + + + + + definition under review + observation of the ovary + observation de l'ovaire + + + + + + + + + + + + + + + definition under review + observation of the peritoneal cavity + observation de la cavité péritonéale + + + + + + + + + + + + + + + definition under review + observation of the trophoblast + observation du trophoblaste + + + + + + + + + definition under review + observation of the uterus + observation de l'utérus + + + + + + + + + + + + + + + observation of the yolk sac + observation de la vésicule vitelline + + + + + + + + + + + + + + + + + + + + + + + definition under review + observation of the non interstitial portion of the uterine tube + observation de la partie non interstitielle de la trompe utérine + + + + + + + + + + + + + + + definition under review + myometrium of wall of uterine isthmus observation + observation de la paroi de l'isthme utérin + + + + + + + + + + + + + + + definition under review + observation of the cervix of uterus + observation du col de l'utérus + + + + + + + + + + + + + + + definition under review + observation of internal cervical os + observation de l'orifice interne du col de l'utérus + + + + + + + + + + + + + + + definition under review + observation of the uterine horn + observation de la corne utérine + + + + + + + + + + + + + + + definition under review + observation of the uterine cavity + observation de la cavité utérine + + + + + + + + + + + + + + + definition under review + observation of the myometrium of wall of body of uterus + observation du myomètre de la paroi du corps de l'utérus + + + + + + + + + + + + + + + observation of the uterine isthmus + skos:definition under review + observation de l'isthme utérin + + + + + + + + + + + + + + + observation of the fundus of uterus + skos:definition under review + observation du fundus de l'utérus + + + + + + + + + Menelas definition : +observed changes in physical world, world defined by physical properties, as opposed to the spatial world, where objects are considered only for their area, notwithstanding their other physical characteristics. + + physical process + processus physique + + + + + + + + + + + + + + + definition under review + ectopic pregnancy complication + complication de grossesse ectopique + + + + + + + + + + + + + + + Rupture of the Fallopian tube is due to an increase of an haematosalpinx inside the lumen or to the invasion of the wall by the trophoblast in the case of a tubal ectopic pregnancy. It can lead to a massive bleeding responsible for an haematoperitoneum. + tubal rupture + rupture tubaire + + + + + + + + + MeSH definition : +"The fusion of a spermatozoon with an ovum thus resulting in the formation of a zygote." + fertilization + fécondation + + + + + + + + + + + + + + + + IVF + MeSH definition : +"An assisted reproductive technique that includes the direct handling and manipulation of oocytes and sperm to achieve fertilization in vitro." + in vitro fertilization + FIV + fécondation in vitro + + + + + + + + + definition under review + + manifestation process + processus de manifestation + + + + + + + + + + + + + + + definition under review + pain irradiation + irradiation de la douleur + + + + + + + + + + + + + + + This process involves the attachment, penetration, and embedding of the blastocyst in the lining of the uterine wall, or elsewhere in case of ectopic pregnancy during the early stages of prenatal development, occuring six or seven days after fertilization of the oocyte. + nidation + pregnancy implantation + Implantation de la grossesse + nidation + + + + + + + + + + + + + + + + + + + + + + + + Implantation of the blastocyst does not occur within endometrium inside the uterine cavity. + ectopic implantation + implantation ectopique + + + + + + + + + + + + + + + + + + + + + + + + + + + Implantation of the blastocyst occurs within abdominal cavity, and has for location possibly any region of parietal peritoneum and any abdominal viscera. + abdominal implantation + implantation intra-abdominale + + + + + + + + + + + + + + + + + + + + + + Implantation of the blastocyst occurs within a myometrial area corresponding to a caesaran section scar. +This kind of implantation has only been described within transverse low segment caesarean section, therefore we consider here that caesarean section scar implantation only takes place within those kind of scar. + caesarean section scar implantation + implantation au sein d'une cicatrice de césarienne + + + + + + + + + + + + + + + Implantation of the blastocyst occurs within the cervix of uterus. + cervical implantation + implantation cervicale + + + + + + + + + + + + + + + + + + + + + + Implantation of the blastocyst occurs in a rudimentary horn of a unicornuate uterus with a rudimentary non-communicating horn. + cornual implantation + implantation cornuale + + + + + + + + + + + + + + + Implantation of the blastocyst occurs within the interstitial portion of the Fallopian tube. + interstitial implantation + implantation interstitielle + + + + + + + + + + + + + + + Implantation of the blastocyst occurs entirely or totally within myometrium of the uterine wall (body, fundus, isthmus). + intramural implantation + implantation intramurale + + + + + + + + + + + + + + + Implantation of the blastocyst occurs within the ovary, more precisely within the cortex. + ovarian implantation + implantation ovarienne + + + + + + + + + + + + + + + It is a kind of implantation for which a specific pathological state of the uterus must exist for this process to occur. + particular ectopic implantation + implantation ectopique particulière + particular ectopic implantation + + + + + + + + + + + + + + + Implantation of the blastocysts occurs within retroperitoneal space, and pregnancy often has close relation with great vessels. + retroperitoneal implantation + implantation rétropéritonéale + + + + + + + + + + + + + + + + + + + + + + + Implantation of the blastocyst occurs anywhere within the Fallopian tube except within the interstitial portion, either within the mucous layer or within the muscular layer or within both. + tubal implantation + implantation tubaire + + + + + + + + + + + + + + + Implantation of the blastocyst occurs within endometrium inside the uterine cavity. + normal implantation + implantation normale + + + + + + + + + + + + + + + Menelas CG Representation : +[surgery: _x]- + (agt)-->[human_being:_surgeon] + --(defines_cultural_function)-->[cultural_system_function] + --(cultural_role)-->[surgeon] + (purported_region)-->[morphologic_object] ; e.g. thorax + (purported_obj)-->[anatomical_element] ; e.g. coeur + (access_region)-->[anatomical_element] ; e.g. sternum + % + surgical treatment + traitement chirurgical + + + + + + + + + Surgical procedure in which an incision is made through a woman's abdomen (laparotomy) and uterus (hysterotomy) to extract a fetus. + caesarean section + césarienne + + + + + + + + + + + + + + + Most frequent type of caesarean section, in which a transverse hysterotomy is performed at the lowest level of the anterior wall of the uterus, wich is called the lower segment. + transverse low segment caesarean section + césarienne avec hystérotomie segmentaire + + + + + + + + + Surgical procedure involving fallopian tubes, most of the time during a laparoscopy. + fallopian tube surgery + chirurgie tubaire + + + + + + + + + Removal of fallopian tube. + salpingectomy + salpingectomie + + + + + + + + + Removal of the left fallopian tube. + left salpingectomy + salpingectomie gauche + + + + + + + + + Removal of the right fallopian tube. + right salpingectomy + salpingectomie droite + + + + + + + + + Any surgical procedure involving fallopian tubes, aiming to restore their function, for example neosalpingostomy or adhesiolysis. + tubal plasty + plastie tubaire + + + + + + + + + Excision of the uterus. + hysterectomy + hystérectomie + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Hysterectomy associated with salpingectomy is a surgical procedure during which both fallopian tubes are removed. + hysterectomy with salpingectomy + hysterectomie avec salpingectomie + + + + + + + + + + + + + + + + + + + + + Inter-adnexal hysterectomy is a surgical procedure during which adnexae are not removed. + inter-adnexal hysterectomy + hystérectomie inter-annexielle + + + + + + + + + Ablation of a fibroid of the uterus. + myomectomy + uterine fibroid ablation + ablation de fibrome utérin + + + + + + + + + Ablation of a uterine fibroid during a laparotomy, procedure in which an incision is made into the abdominal wall. Most of the time, incision type is a Pfannenstiel incision, or a lower midline abdominal incision. Fibroids are approached from uterine outer wall. + fibroid ablation by laparotomy + ablation de fibrome utérin par laparotomie + + + + + + + + + + Resection of a uterine fibroid during a surgical hysteroscopy, which is an endoscopic surgery of the interior of the uterus. + hysterescopic fibroid ablation + ablation hystéroscopique de fibrome utérin + + + + + + + + + Ablation of a uterine fibroid during a laparoscopy, procedure in which a laparoscope (viewing tube) is inserted through a small incision near the navel to examine the abdominal and pelvic organs in the peritoneal cavity. Other small incisions are made to insert instruments to perform procedures. Fibroids are approached from uterine outer wall. + laparoscopic fibroid ablation + ablation laparoscopique de fibrome utérin + + + + + + + + + Surgical removal of the uterine contents, after dilatation of the cervix, by means of a hollow curette introduced into the uterus, through which suction is applied. The indication are mostly abortion and failed early pregnancy. + + vacuum aspiratio + vacuum curettage + aspiration endo-utérine + + + + + + + + + + + + + + + + + technical element + technical element + éléments techniques + + + + + + + + + definition under review + examination mode + examination technique + méthode d'examen + technique d'examen + + + + + + + + + Echographic surface corresponding to an anatomical surface wich, as an imaginary plane, bisects an anatomical structure or an anatomical space. + echographic view + coupe échographique + + + + + + + + + View of adnexal area where ovary and uterine tube are usually found, hence where a mass correponding to a tubal pregnancy can be visualized. +Adnexal area is visualized in the space adjacent to uterus on each side of it, thus this area is to be found from an axial view of uterus. +Adnexal area has to be scanned along antero-posterior and latero-medial axes. + adnexal area view + coupe de la région annexielle + + + + + + + + + definition under review + uterus view + coupe de l'utérus + + + + + + + + + axial view of uterus + cross-sectional view of uterus + definition under review + transverse view of uterus + coupe axiale de l'uterus + coupe transversale de l'utérus + + + + + + + + + coronal view of uterus + frontal view of uterus + image of the uterus in a coronal plane, obtained after reconstruction with three-dimensional mode. + coupe coronale de l'utérus + + + + + + + + + definition under review + longitudinal view of uterus + sagittal view of uterus + coupe longitudinale de l'uterus + coupe sagittale de l'utérus + + + + + + + + + definition under review + left adnexal area view + coupe de la région annexielle gauche + + + + + + + + + definition under review + right adnexal area view + coupe de la région annexielle droite + + + + + + + + + definition under review + longitudinal view of uterus showing continuity between uterine cavity and cervix + coupe longitudinale de l'utérus montrant la continuité entre la cavité utérine et le col de l'utérus + + + + + + + + + definition under review + longitudinal view of uterus through uterine cavity + coupe longitudinale de l'utérus passant par la cavité utérine + + + + + + + + + definition under review + longitudinal view of uterus through uterine cervix + coupe longitudinale de l'utérus passant par le col de l'utérus + + + + + + + + + axial view of uterus through body of uterus + definition under review + coupe axiale de l'utérus passant par le corps de l'utérus + + + + + + + + + axial view of uterus through cervix of uterus + definition under review + coupe axiale de l'utérus passant par le col de l'utérus + + + + + + + + + axial view of uterus through fundus of uterus + definition under review + coupe axiale de l'utérus passant par le fundus + + + + + + + + + axial view of uterus through isthmus of uterus + definition under review + coupe axiale de l'utérus passant par l'isthme utérin + + + + + + + + + definition under review + right adnexal area view through right ovary + coupe de la région annexielle droite passant par l'ovaire droit + + + + + + + + + definition under review + left adnexal area view through left ovary + coupe de la région annexielle gauche passant par l'ovaire gauche + + + + + + + + + adnexal area view through ovary + definition under review + coupe de la région annexielle passant par l'ovaire + + + + + + + + + + + + + + + + color Doppler mode (2D) + + + + + + + + + + + + + + + + color Doppler mode (3D) + + + + + + + + + + + + + + + + power Doppler mode (2D) + + + + + + + + + + + + + + + + power Doppler mode (3D) + + + + + + + + + objective sign + + + + + + + + + obstetrician-gynaecologist + gynécologue-obstétricien + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + 18591 + ovary surface + + + + + + + + + + + + + + + + + + + + + + + + + + + MeSH definition : +"An unpleasant sensation induced by noxious stimuli which are detected by nerve endongs of nociceptive neurons." + +Pain is frequently a sign of a pathological state. + pain + douleur + + + + + + + + + Pain from the point of view of the patient, that is to say the pain that a patient feels, and how this pain is felt by the patient. + pain manifestation + manifestation de la douleur + + + + + + + + + Values of pain manifestation. + pain manifestation value + + + + + + + + + + + + + + + + + pelvic part of peritoneal cavity + + + + + + + + + 20879 + perisplenic space + + + + + + + + + pain is similar to that associated with period + period like pain + douleur de règles + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + peritoneal cavity pelvic part subdivision + subdivision of pelvic part of peritoneal cavity + + + + + + + + + + + + + + + subdivision of peritoneal cavity + + + + + + + + + + + + + + + + + Menelas definition : +"role played by a human being in a hospital." + personale hospital role + + + + + + + + + changes take place in an abstract state, that is, a state defined on a physical object, qua physical. + kind of abstract state or point of view + physical change concerning a physical object. + According to Menelas, this kind of change is a physical change. + +Menelas CG Representation : +[physical_change_action: _x]- + (reason)-->[state_of_mind:_m]-->(content)-->[physical_state:_y] + (motive)-->[state_of_mind:_n]-->(content)-->[physical_state:_z] + (descriptive_goal)-->[physical_state:_y]<--(intentional) + (performative_goal)-->[intentional_change:_i]- + (reason)-->[state_of_mind:_m] + (descriptive_goal)-->[physical_state: _y]% + (descriptive_result)-->[physical_state]<--(real) + (pat)-->[human_being:_patient]- + (state_of)<--[physical_state:_y] + (state_of)<--[physical_state:_z]-/ + (agt)-->[human_being:_doctor]- + (state_of)<--[state_of_mind:_m] + (state_of)<--[state_of_mind:_n]% + (purported_obj)-->[inanimate:_o]- + (consists_of)<--[physical_state:_z] + (consists_of)<--[physical_state:_y] + (part)<--[human_being:_patient]% + (motivated_by)-->[physical_state:_z] + (inst_tool)-->[physical_object] + % + physical change action + + + + + + + + + intentional/physical objects. + two aspects of IO: situated in time, and mental content. +one aspect of IC: modality of an agent regarding its actions. + view point on physical objects. + viewpoint on abstract object for which an explicit reference system can be exhibited. + Menelas definition : +"physical_functional_objects are functions ensured by physical objects, more precisely by real objects + +the physical function objects correspond to pseudo objects insofar as a pseudo object is an object for which only one functionality a physical object can have is defined. + +defined as the source for all relations that are composed with the label "role"." + +CG Representation : +[physical_functional_object: _x]- + (defines_fct)<--[physical_object] + (role)-->[meta_physical_functional_object] + (functional_aspect)<--[state_of_physical_object] + (sub_functional_object)-->[physical_functional_object] + (dysperforms_function)<--[process] + % + physical functional object + + + + + + + + + + physical change concerning a physical object. + result is in itself an improvement of patient state or not. + CG Representation : +[physical_human_action: _x]- + (agt)-->[human_being] + % + physical human action + + + + + + + + + changes take place in an abstract state, that is, a state defined on a physical object, qua physical. + changes that are intentionally provoked and that bear on state. + human / physical + kind of abstract state, depending on the point of view one may have on physical object: spatial, morphologic, systemic. + According to Menelas, physical intentional change is a change that takes place in an abstract state, that is, a state defined on a physical object, qua physical. + +Menelas CG Representation : +[physical_intentional_change: _x]- + (attr)-->[medical_benefit_attr]--(val_qual)-->[medical_benefit_val] + (motivated_by)-->[pathological_state]--(consists_in)-->[abnormal] + (motivated_by)-->[morpho_anomaly]--(consists_in)-->[abnormal] + (descriptive_goal)-->[physical_state]--(consists_in)-->[normal] + (descriptive_goal)-->[morpho_state]--(consists_in)-->[normal] + % + physical intentional change + + + + + + + + + function a physical object plays in a system. + system defined by natural sciences or social sciences. + system defined by natural sciences. + systems defined in medicine (our special case). + Menelas definition : +"Functioning of a physical object. performed by a process that corresponds to the execution, the occurence of the functioning in time. + +It must be distinguished from the physical_role function. +A physical_system_function corresponds to the functioning of an object (pseudo or real), while a physical_role_function corresponds to the function or role that the functioning enables it to play in another super system. + +3 notions: functioning, role or function, and process. +The functioning (physical_system_function) is the function taken as a whole regarding an object. For example, heart has the cardiac_function. The role (physical_role_function) is the function played by a physical_system_function in another physical_system_function. A process is the occurence or instanciation in time of the functioning. It has hence a before state and an after state. + +To speak about the object of a function, one uses the process that instancies the function in time and space." + +CG Representation : +[physical_system_function: _x]- + (sub_system)<--[physical_system_function:_y] + (physical_role)-->[physical_role_function] + --(relative_to)-->[physical_system_function:_y] + (defines_physical_function)<--[physical_object:_po1] + <--(part)--[physical_object:_po2] + --(defines_physical_function)-->[physical_system_function:_y] + (performs_function)<--[process]--(involved_obj)-->[physical_object] + (measured_val)-->[quantitative_val] + (physical_aspect)<--[physical_state] + % + physical system function + + + + + + + + + Menelas CG Representation : +[physical_treatment: _x]- + (attr)-->[medical_benefit_attr] + --(val_qual)-->[therapeutic_val] + (inst_meth)-->[drug_treatment]--(inst_tool)-->[commercial_drug] + --(made_of)-->[biochemical_molecule] + --(defines_physical_function)-->[physical_system_function] + --(physical_role)-->[biochemical_function] + % + physical treatment + + + + + + + + + physical value + + + + + + + + + physician + + + + + + + + + Menelas definition : +"one-dimensional" + planar + + + + + + + + + + point of view on spatial functional object defined on physical objects. + relative position in 3d on and in an object. + planar relative location + Au sens Menelas : +"localisation sur un objet bidimensionnel, ou un objet tridimensionnel considere bidimensionnellement." + + + + + + + + + + + + + + + + + + + + + + + + + Menelas definition : +Generally, the development is continuous. A process is characterised by before/after states, while there is generally a continuously evoluating intermediate state. + +the physical object P1 is responsible for the process and for its possible dysfunctioning. + +CG Representation : +[process: _x]- + (process_of)-->[physical_object:_p1] ;; pseudo object systemic. + ;; c'est l'agent du processus + (involved_obj)-->[physical_object:_p2] ;; a real object + ;;<--(part)--[physical_object:_p1] + ;; c'est l'objet du processus, ce sur quoi il porte + ;; la vascularisation (process) du coeur (objet) + (performs_function)-->[physical_functional_object:_pfo1]- + (defines_fct)<--[physical_object:_p1] + (role)-->[physical_role_function]--(normalised_as)-->[normal] + <--(consists_in)--[physical_state] + --(consists_of)-->[physical_object:_p1] + --(defines_physical_function)-->[physical_functional_object:_pfo1] + (measured_val)-->[value]--(normalised_as)-->[normal] + <--(consists_in)--[physical_state] + --(consists_of)-->[physical_object:_p1] + --(defines_physical_function)-->[physical_functional_object:_pfo1] + (sub_functional_object)-->[physical_functional_object:_pfo2] + <--(defines_fct)--[physical_object:_p3] + <--(part)--[physical_object:_p1]% + (dysperforms_function)-->[physical_functional_object:_pfo1]- + (physical_aspect)<--[physical_state:_ps1] + --(consists_of)-->[physical_object:_p1] + --(defines_physical_function)-->[physical_functional_object:_pfo1] + (defines_fct)<--[physical_object:_p1] + (role)-->[meta_physical_functional_object]- + (dysfunction_in)<--[physical_state:_ps1] + (normalised_as)-->[abnormal] + <--(consists_in)--[physical_state:_ps1]% + (measured_val)-->[value]- + (normalised_as)-->[abnormal] + <--(consists_in)--[physical_state:_ps1] + (dysfunction_in)<--[physical_state:_ps1]%% + % + development of a serial of phenomena. + process + processus + + + + + + + + + professional role function + roles played by a physical object in the professional system + + + + + + + + + The major progestational steroid that is secreted primarily by the corpus luteum and the placenta. Progesterone acts on the uterus, the mammary glands and the brain. It is required in embryo implantation; pregnancy maintenance, and the development of mammary tissue for milk production. Progesterone, converted from pregnenolone, also serves as an intermediate in the biosynthesis of gonadal steroid hormones and adrenal corticosteroids. + progesterone + progestérone + + + + + + + + + Compound that interact with progesterone receptors in target tissues to bring about the effects similar to those of progesterone. Primary actions of progestins, including natural and synthetic steroids, are on the uterus and the mammary gland in preparation for and in maintenance of pregnancy. + progestagen + progestin + progestatif + + + + + + + + + + + + + + + + + proximal + + + + + + + + + qualitative hCG test negative + + + + + + + + + qualitative hCG test negative + + + + + + + + + qualitative hCG test positive + + + + + + + + + blood or urine + result of qualitative hCG test + + + + + + + + + evaluation/mesure + Menelas definition : +"Qualitative value associated with an attribute. + +Absolute evaluation system (versus measure) associated with functional objects. An evaluation of functional object related to another functional object is a role." + + +OntoDPN definition : +"Describes the results of qualitative values associated with attributes. For example, "heart sound" has several possible values, and "heart sound" is an attribute, hence an ideal object. +By definition, each of these concepts is linked to an ideal attribute." + qualitative value + valeur qualitative + + + + + + + + + blood + result of quantitative hCG test + + + + + + + + + evaluation/mesure + Menelas definition : +"mesure quantitative d'un attribut ou d'un functional object. + +Le functional object est value dans un systeme de MESURE (versus evaluation) absolu, i.e. non relatif a un autre functional object." + + quantitative value + + + + + + + + + recently + + + + + + + + + + + + + + + + + + + + + + + + + Menelas definition : +"a relative location is a location defined relatively to a spatial_object. It is a location, a place, but not an object. These locations are useful to situate a part of an object on this object. + +relative_location characterizes a subregion on a region." + relative location + + + + + + + + + relative time stamp + + + + + + + + + right + + + + + + + + + + + + + + + 18592 + surface of right ovary + + + + + + + + + 14713 + + + + + + + + + + + + + + + + + FMA definition : +" Organ cavity subdivision that is a part of a serous cavity, demarcated from other serous cavity subdivisions by one or more anatomical structures or anatomical surfaces; together with other serous cavity subdivisions, it constitutes the serous cavity. Examples: costodiaphragmatic recess, oblique sinus of pericardial cavity, lesser sac, suprapatellar bursal space." + cavity of subdivision of serous sac + + + + + + + + + sex value + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + shoulder pain + douleur scapulaire + + + + + + + + + sign + + + + + + + + + space unit + unité d'espace + + + + + + + + + + kind of function defined on physical objects. + point of view on cultural functional object defined on physical objects. + point of view on functional object defined on physical objects. + specificity to the kind of spatial object it is the role of. + Menelas definition : +"it is the localisation of a subregion in a region. It is the function played by the subregion in the region considered as a topological system. Depending on the nature of the system, network or individual, subregions will be differently characterized." + point of view on spatial functional object defined on physical objects. + spatial role function + + + + + + + + + specialist + + + + + + + + + + + + + + + 16030 + surface of spleen + + + + + + + + + + + + + + + + + + stable + + + + + + + + + CG Representation : +[state_attr: _x]<--(attr)--[state] + state attribute + attribut d'état + + + + + + + + + state evolution value + + + + + + + + + 20676 + subhepatic space + + + + + + + + + subjective sign + + + + + + + + + 14712 + subphrenic space + + + + + + + + + 20673 + supracolic space + + + + + + + + + 20681 + supracolic space subdivision + + + + + + + + + + + + + + + + + + + + + + + + + syndrome + + + + + + + + + function a physical object plays in a system. + spatial/systemic/morpho. + system defined by natural sciences or social sciences. + view point on physical objects + According to Menelas, system function is a viewpoint on physical object, which is a function played by a physical object, in a system defined by natural sciences or social sciences. + +CG Representation : +[system_function: _x]- + (sub_system)-->[system_function:_y]-- + (role)-->[meta_physical_functional_object]-- + (relative_to)-->[system_function:_x] + (defines_systemic_function)<-- + [physical_object:_po1]--(part) + -->[physical_object:_po2]-- + (defines_systemic_function)-->[system_function:_y]% + sytem function + + + + + + + + + tachycardia + + + + + + + + + + + + + + + + + date or interval + temporal situation of an intentional object + temporal situation/mental apprehension + view point on intentional objects + Menelas definition : +"these are objects defined on the time axis, i.e. interval and point (date). There denotations are hence real interval on R (understood as the time axis) or real point on R." + temporal object + + + + + + + + + Menelas definition : +"temporal_object_function is the role played by a temporal_object with respect to a temporal object that contains it." + + temporal object role function + + + + + + + + + temporal object validity + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Menelas definition : +an unintentional change is a change for which there is no agent, because there is no goal nor intention. It is a constated change in a reference world, there is no intention behind it, in the common and philosophical meaning. + +There could be unintentional change in every reference world we have considered for the intentional_change: we see changes in the physical world (physical_unintentional_change), in the mental world (mental_unintentional_change), in the cultural world (cultural_unintentional_change). In our domain, only the first seems relevant. Moreover, there could be for the two others a problem in considering unintentional_changes in worlds that exist only in intension, or intentionally, or by means of human spirit. Although not so shocking, one may wonder. + +CG Representation : +[unintentional_change: _x]- + (involved_obj)-->[physical_object] + (before_state)-->[state_of_physical_object:_as1] + (after_state)-->[state_of_physical_object:_ass] ;;comme dirait Jean. + (attr)-->[unintentional_attr]--(val_qual)-->[unintentional_val] + % + unintentional change + changement non intentionnel + + + + + + + + + unit + + + + + + + + + unstable + + + + + + + + + + + + + + + 15916 + surface of urinary bladder + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Echographic sign describing the uterus. + uterus echographic sign + signe échographique de l'utérus + + + + + + + + + + + + + + + 17759 + surface of uterus + uterine surface + + + + + + + + + + + + + + + + + + + + + + + + + not specific to the kind of functional object. + point of view on functional object + specificity of the point of view to the considered object; + Menelas definition : +"A value is the value of an attribute. + +Our choice is that values are ideal objects, so there is no distinction between the type and the extension. It is a singular concept. +Denotation of the concept type male is male. + +Besides, values are very close to subfunctional_objects, because these are role played by objects, and hence a value taken by the sub macro_functional object considered as a property or attribute. However, the difference between the two consists in the fact that a value qualify an intrinsic property of an individual, while a subfunctional object qualifies an abstract object according to a point of view that might not even considered when the abstract object is studied for itself. + +Hence a value is what belongs to a substratum independently to the other substrata. It is sufficient condition, to know that a notion is a value or a substratum, is that a value is related to no other substratum than this one it is a value of and meta values. + value + + + + + + + + + vascular pressure anomaly + + + + + + + + + + + + + + + + + Menelas definition : +"tri-dimensional" + volumic + + + + + + + + + point of view on spatial functional object defined on physical objects. + relative position in 3d on and in an object. + specificity to the kind of spatial object it is the role of. + Menelas definition : +"localisation sur tout objet tridimensionnel volumique." + relative situation of area defined within another area that looks like an individual. + volumic relative location + + + + + + + + + + + + + + + + + + + + + + + + + lateral + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/test/models/test_class_request_lang.rb b/test/models/test_class_request_lang.rb index 1eb460a7..ac8d57a8 100644 --- a/test/models/test_class_request_lang.rb +++ b/test/models/test_class_request_lang.rb @@ -53,6 +53,20 @@ def test_requested_language_found end + def test_requeststore_not_set + cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', + requested_lang: nil) + assert_equal 'industrialization', cls.prefLabel + assert_equal cls.prefLabel, cls.prefLabel(include_languages: true) + cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', + requested_lang: :ALL) + assert_equal 'industrialization', cls.prefLabel + assert_equal Hash, cls.prefLabel(include_languages: true).class + assert_equal 2, cls.prefLabel(include_languages: true).keys.length + assert_equal 'industrialization', cls.prefLabel(include_languages: true)[:en] + assert_equal 'industrialisation', cls.prefLabel(include_languages: true)[:fr] + end + def test_requested_language_not_found cls = get_class_by_lang('http://opendata.inrae.fr/thesaurusINRAE/c_22817', diff --git a/test/models/test_ontology_submission.rb b/test/models/test_ontology_submission.rb index 112c137e..d3908458 100644 --- a/test/models/test_ontology_submission.rb +++ b/test/models/test_ontology_submission.rb @@ -232,7 +232,15 @@ def test_obo_part_of #strict comparison to be sure the merge with the tree_view branch goes fine LinkedData::Models::Class.where.in(sub).include(:prefLabel,:synonym,:notation).each do |cls| - assert_instance_of String,cls.prefLabel + + + # binding.pry unless cls.prefLabel + + assert_instance_of String, cls.prefLabel + + + + if cls.notation.nil? assert false,"notation empty" end @@ -285,7 +293,6 @@ def test_submission_parse_subfolders_zip end def test_submission_parse - # This one has some nasty looking IRIS with slashes in the anchor unless ENV["BP_SKIP_HEAVY_TESTS"] == "1" submission_parse("MCCLTEST", "MCCLS TEST", @@ -313,6 +320,26 @@ def test_submission_parse assert sub.version["Date: 11-2011"] end + def test_generate_language_preflabels + submission_parse("D3OTEST", "DSMZ Digital Diversity Ontology Test", + "./test/data/ontology_files/d3o.owl", 1, + process_rdf: true, index_search: true, extract_metadata: false) + + res = LinkedData::Models::Class.search("prefLabel_en:Anatomic Structure", {:fq => "submissionAcronym:D3OTEST", :start => 0, :rows => 100}) + refute_equal 0, res["response"]["numFound"] + refute_nil res["response"]["docs"].select{|doc| doc["resource_id"].eql?('https://purl.dsmz.de/schema/AnatomicStructure')}.first + + submission_parse("EPOTEST", "Early Pregnancy Ontology Test", + "./test/data/ontology_files/epo.owl", 1, + process_rdf: true, index_search: true, extract_metadata: false) + res = LinkedData::Models::Class.search("prefLabel_en:technical element", {:fq => "submissionAcronym:EPOTEST", :start => 0, :rows => 100}) + refute_equal 0, res["response"]["numFound"] + refute_nil res["response"]["docs"].select{|doc| doc["resource_id"].eql?('http://www.semanticweb.org/ontologies/epo.owl#OPPIO_t000000')}.first + res = LinkedData::Models::Class.search("prefLabel_fr:éléments techniques", {:fq => "submissionAcronym:EPOTEST", :start => 0, :rows => 100}) + refute_equal 0, res["response"]["numFound"] + refute_nil res["response"]["docs"].select{|doc| doc["resource_id"].eql?('http://www.semanticweb.org/ontologies/epo.owl#OPPIO_t000000')}.first + end + def test_process_submission_diff acronym = 'BRO' # Create a 1st version for BRO