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<!DOCTYPE html>
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<meta name="keywords" content="Neurokernel, Drosophila, brain emulation, computational neuroscience" />
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<title>Neurokernel Resource</title>
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<li><a href="about.html">About</a></li>
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<li class="active"><a href="resource.html">Resources</a></li>
<li><a href="event.html">Events</a></li>
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<h1>Resources</h1>
</div>
<h2>Anatomical Data</h2>
<table class="table table-striped table-bordered table-hover">
<tr>
<th class="col-sm-3">Link</th>
<th>Information</th>
</tr>
<tr>
<td><a
href="https://braingazer.org/">BrainBase</a></td>
<td>A database hosting a large collection of confocal microscopy
images showing expressions of VT and enhancer trap Gal4
lines generated by Barry Dickson and his group over
several years at the Institute of Molecular Pathology
Vienna.</td>
</tr>
<tr>
<td><a
href="http://flybrain.neurobio.arizona.edu/">FlyBrain</a></td>
<td>An online atlas and database of the <i>Drosophila</i> nervous
system. Published by the University of Arizona, USA.</td>
</tr>
<tr>
<td><a
href="http://www.flycircuit.tw/">FlyCircuit</a></td>
<td>A public database for online archiving, cell type
inventory, browsing, searching, analysis and 3D
visualization of individual neurons in the <i>Drosophila</i>
brain. Published by Ann-Shyn Chiang's group at National
Tsing Hua University, Taiwan.</td>
</tr>
<tr>
<td><a
href="http://www.sciencedirect.com/science/article/pii/S0960982211011468">Fruit
Fly Lamina Connectome</a></td>
<td>Fruit fly lamina connectome jointly published by de Polavieja Lab at Cajal
Institute, Spain and HHMI Janelia Research Campus, USA.</td>
</tr>
<tr>
<td><a
href="https://github.com/janelia-flyem/ConnectomeHackathon2015">Fruit
Fly Medulla Connectome</a></td>
<td>Fruit fly medulla connectome published by HHMI Janelia Research Campus, USA.</td>
</tr>
<tr>
<td><a href="https://www.janelia.org/project-team/flylight">FlyLight</a></td>
<td>The FlyLight Project produces large anatomical data sets, and
highly characterized collections of GAL4, LexA and Split-GAL4
drivers in order to enable the visualization and precise
manipulation of individual cell types in the adult and larval
Drosophila nervous systems. Developed by HHMI Janelia Research Campus, USA.
</td>
</tr>
<tr>
<td><a
href="https://senselab.med.yale.edu/modeldb/default.cshtml">ModelDB</a></td>
<td>An accessible location for storing and efficiently retrieving
computational neuroscience models. Managed by Gordon
Shepherd's group at Yale University.</td>
</tr>
<tr>
<td><a
href="http://neuromorpho.org/neuroMorpho/index.jsp">NeuroMorpho</a></td>
<td>A centrally curated inventory of digitally reconstructed
neurons associated with peer-reviewed publications.
Managed by Giorgio Ascoli's group at George Mason University.</td>
</tr>
<tr>
<td ><a href="http://www.openconnectomeproject.org/">Open Connectome Project</a></td>
<td>All levels of “connectomes”, from the nano (using electron
microscopy) to the macro (using magnetic resonance
imaging). Founded by Joshua T. Vogelstein, R. Jacob
Vogelstein and Randal Burns at Johns Hopkins University,
USA.</td>
</tr>
<tr>
<td><a
href="http://www.virtualflybrain.org/site/vfb_site/home.htm">Virtual Fly Brain</a></td>
<td>An interactive tool for neurobiologists to explore the
detailed neuroanatomy, neuron connectivity and gene
expression of the adult <i>Drosophila melanogaster</i> brain.</td>
</tr>
</table>
<h2>Genes and Genomes Data</h2>
<table class="table table-striped table-bordered table-hover">
<tr>
<th class="col-sm-3">Link</th>
<th>Information</th>
</tr>
<tr>
<td><a href="http://flybase.org/">FlyBase</a></td>
<td>An online bioinformatics database and the primary repository
of genetic and molecular data for the insect family
<i>Drosophila melanogaster</i>. It is carried out by a
consortium of <i>Drosophila</i> researchers and
computer scientists at Harvard University and Indiana
University, both in USA, and University of
Cambridge, UK.
</td>
</tr>
</table>
<h2>Experimental Data</h2>
<table class="table table-striped table-bordered table-hover">
<tr>
<th class="col-sm-3">Link</th>
<th>Information</th>
</tr>
<tr>
<td><a href="https://crcns.org/">CRCNS</a></td>
<td>The Collaborative Research in Computational Neuroscience
(CRCNS) is a joint program of NSF and NIH that, since
2002, has supported integration of theoretical and
experimental neuroscience through collaborative research
projects. Managed by Jeffrey L. Teeters and Friedrich T.
Sommer both of the Redwood Center for Theoretical
Neuroscience at University of California, Berkeley, USA.
</td>
<tr>
<td><a
href="http://neuro.uni-konstanz.de/DoOR/default.html">DoOR Database</a></td>
<td>A database collecting odorant response in <i>Drosophila</i>.
Published by C. Giovanni Galizia's group at
Universität Konstanz.
</td>
</tr>
</table>
<h2>Data Visualization</h2>
<table class="table table-striped table-bordered table-hover">
<tr>
<th class="col-sm-3">Link</th>
<th>Information</th>
</tr>
<tr>
<td><a href="http://www.neutracing.com/">neuTube</a></td>
<td>An open source software for reconstructing neurons from
fluorescence microscope images. Developed jointly by
Ting Zhao at HHMI Janelia Research Campus, USA, and
Linqing Feng at Jinny Kim’s Lab, Center for Functional
Connectomics, KIST, South Korea.
</td>
</tr>
<tr>
<td><a href="http://home.penglab.com/proj/vaa3d/home/">Vaa3D</a></td>
<td>The 3D Visualization-Assisted Analysis (Vaa3D) software suite
is an open-source, fast and versatile 3D/4D/5D
image visualization and analysis system for bioimages and
surface objects. Developed by Hanchuan Peng's group at
Allen Institute for Brain Science, USA.
</td>
</tr>
</table>
<h2>Related Projects</h2>
<table class="table table-striped table-bordered table-hover">
<tr>
<th class="col-sm-3">Link</th>
<th>Information</th>
</tr>
</tr>
<tr>
<td><a href="http://www.opensourcebrain.org/">Open Source Brain</a></td>
<td>A resource for sharing and collaboratively developing
computational models of neural systems.
The Open Source Brain initiative was started in the
Silver Lab at UCL as part of a Wellcome Trust funded
project.
</td>
</tr>
<tr>
<td><a href="http://www.openworm.org/">OpenWorm</a></td>
<td>An open source project dedicated to creating a virtual C.
elegans nematode in a computer.
</td>
</tr>
</table>
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