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"resolved": "https://registry.npmjs.org/ws/-/ws-8.14.2.tgz", - "integrity": "sha512-wEBG1ftX4jcglPxgFCMJmZ2PLtSbJ2Peg6TmpJFTbe9GZYOQCDPdMYu/Tm0/bGZkw8paZnJY45J4K2PZrLYq8g==", "dev": true, + "license": "MIT", "engines": { "node": ">=10.0.0" }, @@ -11948,38 +10831,33 @@ }, "node_modules/xml-name-validator": { "version": "4.0.0", - "resolved": "https://registry.npmjs.org/xml-name-validator/-/xml-name-validator-4.0.0.tgz", - "integrity": "sha512-ICP2e+jsHvAj2E2lIHxa5tjXRlKDJo4IdvPvCXbXQGdzSfmSpNVyIKMvoZHjDY9DP0zV17iI85o90vRFXNccRw==", "dev": true, + "license": "Apache-2.0", "engines": { "node": ">=12" } }, "node_modules/xmlchars": { "version": "2.2.0", - "resolved": "https://registry.npmjs.org/xmlchars/-/xmlchars-2.2.0.tgz", - "integrity": "sha512-JZnDKK8B0RCDw84FNdDAIpZK+JuJw+s7Lz8nksI7SIuU3UXJJslUthsi+uWBUYOwPFwW7W7PRLRfUKpxjtjFCw==", - "dev": true + "dev": true, + "license": "MIT" }, "node_modules/y18n": { "version": "5.0.8", - "resolved": "https://registry.npmjs.org/y18n/-/y18n-5.0.8.tgz", - "integrity": "sha512-0pfFzegeDWJHJIAmTLRP2DwHjdF5s7jo9tuztdQxAhINCdvS+3nGINqPd00AphqJR/0LhANUS6/+7SCb98YOfA==", "dev": true, + "license": "ISC", "engines": { "node": ">=10" } }, "node_modules/yallist": { "version": "4.0.0", - "resolved": "https://registry.npmjs.org/yallist/-/yallist-4.0.0.tgz", - "integrity": "sha512-3wdGidZyq5PB084XLES5TpOSRA3wjXAlIWMhum2kRcv/41Sn2emQ0dycQW4uZXLejwKvg6EsvbdlVL+FYEct7A==" + "license": "ISC" }, "node_modules/yargs": { "version": "17.3.1", - "resolved": "https://registry.npmjs.org/yargs/-/yargs-17.3.1.tgz", - "integrity": "sha512-WUANQeVgjLbNsEmGk20f+nlHgOqzRFpiGWVaBrYGYIGANIIu3lWjoyi0fNlFmJkvfhCZ6BXINe7/W2O2bV4iaA==", "dev": true, + "license": "MIT", "dependencies": { "cliui": "^7.0.2", "escalade": "^3.1.1", @@ -11995,27 +10873,23 @@ }, "node_modules/yargs-parser": { "version": "20.2.9", - "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-20.2.9.tgz", - "integrity": "sha512-y11nGElTIV+CT3Zv9t7VKl+Q3hTQoT9a1Qzezhhl6Rp21gJ/IVTW7Z3y9EWXhuUBC2Shnf+DX0antecpAwSP8w==", "dev": true, + "license": "ISC", "engines": { "node": ">=10" } }, "node_modules/yargs/node_modules/yargs-parser": { "version": "21.1.1", - "resolved": "https://registry.npmjs.org/yargs-parser/-/yargs-parser-21.1.1.tgz", - "integrity": "sha512-tVpsJW7DdjecAiFpbIB1e3qxIQsE6NoPc5/eTdrbbIC4h0LVsWhnoa3g+m2HclBIujHzsxZ4VJVA+GUuc2/LBw==", "dev": true, + "license": "ISC", "engines": { "node": ">=12" } }, "node_modules/yocto-queue": { "version": "0.1.0", - "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", - "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==", - "dev": true, + "license": "MIT", "engines": { "node": ">=10" }, diff --git a/package.json b/package.json index c95ca6dbbc8fb..678b286ddf88e 100644 --- a/package.json +++ b/package.json @@ -4,6 +4,11 @@ "node": ">= 18.0.0" }, "dependencies": { + "cornerstone-core": "^2.6.1", + "cornerstone-tools": "^6.0.8", + "@cornerstonejs/nifti-image-loader": "^1.0.7", + "cornerstone-wado-image-loader": "^4.3.0", + "dicom-parser": "^1.8.19", "@citation-js/core": "0.7.1", "@citation-js/plugin-bibtex": "0.7.1", "@citation-js/plugin-csl": "0.7.1", diff --git a/routers/web/repo/view.go b/routers/web/repo/view.go index 4dfa01d8e2a73..cf24f46a6fd49 100644 --- a/routers/web/repo/view.go +++ b/routers/web/repo/view.go @@ -568,6 +568,10 @@ func renderFile(ctx *context.Context, entry *git.TreeEntry, treeLink, rawLink st case fInfo.st.IsImage() && (setting.UI.SVG.Enabled || !fInfo.st.IsSvgImage()): ctx.Data["IsImageFile"] = true ctx.Data["CanCopyContent"] = true + case strings.HasSuffix(strings.ToLower(blob.Name()), ".nii") || strings.HasSuffix(strings.ToLower(blob.Name()), ".nii.gz"): + ctx.Data["IsNIfTI"] = true + case strings.HasSuffix(strings.ToLower(blob.Name()), ".dcm") || strings.HasSuffix(strings.ToLower(blob.Name()), ".dicom"): + ctx.Data["IsDICOM"] = true default: if fInfo.fileSize >= setting.UI.MaxDisplayFileSize { ctx.Data["IsFileTooLarge"] = true diff --git a/templates/repo/view_file.tmpl b/templates/repo/view_file.tmpl index 53e889fefc3a6..9de92eaa66b3d 100644 --- a/templates/repo/view_file.tmpl +++ b/templates/repo/view_file.tmpl @@ -85,7 +85,11 @@ {{ctx.Locale.Tr "repo.audio_not_supported_in_browser"}} {{else if .IsPDFFile}} -
+ + {{else if .IsNIfTI}} + + {{else if .IsDICOM}} + {{else}} {{ctx.Locale.Tr "repo.file_view_raw"}} {{end}} diff --git a/web_src/js/features/cornerstone.js b/web_src/js/features/cornerstone.js new file mode 100644 index 0000000000000..6f622cde75ff4 --- /dev/null +++ b/web_src/js/features/cornerstone.js @@ -0,0 +1,51 @@ +// CornerstoneJS is a renderer and UI toolkit meant for +// medical image formats: .nii, .dcm, and some others. +// +// To use: create an element like +// +// * +// +// and file.nii.gz will load when the page loads. +// +// Swap out 'nifti' for 'wadouri:' if using a DICOM file. +// +// +// **NOTE**: this is written using the _legacy_ cornerstone library, +// cornerstone-core, and is *not* compatible with the rewrite +// @cornerstonejs/core because @cornerstonejs/nifti-image-loader +// isn't: https://github.com/cornerstonejs/cornerstone-nifti-image-loader/issues/48#issuecomment-1271794397 +// and rendering NIfTIs is the main reason this is here at all. +// + +export async function initCornerstone() { + if (!document.querySelector('.cornerstone-viewport')) return; + + const cornerstone = await import(/* webpackChunkName: "cornerstone-core" */ 'cornerstone-core'); + const dicomParser = await import(/* webpackChunkName: "dicom-parser" */ 'dicom-parser'); + const cornerstoneWADOImageLoader = await import(/* webpackChunkName: "cornerstone-wado-image-loader" */ 'cornerstone-wado-image-loader'); + const cornerstoneNIFTIImageLoader = await import(/* webpackChunkName: "@cornerstonejs/nifti-image-loader" */ '@cornerstonejs/nifti-image-loader'); + + // why are these necessary? too much abstraction, that's why. + cornerstoneWADOImageLoader.external.dicomParser = dicomParser; + cornerstoneWADOImageLoader.external.cornerstone = cornerstone; + cornerstoneNIFTIImageLoader.external.cornerstone = cornerstone; + + for (const canvas of document.querySelectorAll('.cornerstone-viewport')) { + if (canvas.dataset.src === undefined) { + continue; + } + cornerstone.enable(canvas); + + console.info('Loading', canvas.dataset.src, 'into CornerstoneJS'); + cornerstone.loadAndCacheImage(canvas.dataset.src) + .then((image) => { + console.debug(image); + + const viewport = cornerstone.getDefaultViewportForImage(canvas, image); + cornerstone.displayImage(canvas, image, viewport); + }) + .catch((err) => { + console.error(err); + }); + } +} diff --git a/web_src/js/index.js b/web_src/js/index.js index 4713618506b0c..026cbf2c4e20c 100644 --- a/web_src/js/index.js +++ b/web_src/js/index.js @@ -75,6 +75,7 @@ import {initRepoBranchButton} from './features/repo-branch.js'; import {initCommonOrganization} from './features/common-organization.js'; import {initRepoWikiForm} from './features/repo-wiki.js'; import {initRepoCommentForm, initRepository} from './features/repo-legacy.js'; +import {initCornerstone} from './features/cornerstone.js'; import {initCopyContent} from './features/copycontent.js'; import {initCaptcha} from './features/captcha.js'; import {initRepositoryActionView} from './components/RepoActionView.vue'; @@ -175,6 +176,7 @@ onDomReady(() => { initCommitStatuses(); initCaptcha(); + initCornerstone(); initUserAuthLinkAccountView(); initUserAuthOauth2();