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.nf-core.yml
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.nf-core.yml
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lint:
files_exist:
- "CODE_OF_CONDUCT.md"
- "assets/nf-core-germline_logo_light.png"
- "docs/images/nf-core-germline_logo_light.png"
- "docs/images/nf-core-germline_logo_dark.png"
- ".github/ISSUE_TEMPLATE/config.yml"
- ".github/workflows/awstest.yml"
- ".github/workflows/awsfulltest.yml"
- "docs/README.md"
files_unchanged:
- ".github/CONTRIBUTING.md"
- ".github/PULL_REQUEST_TEMPLATE.md"
- ".github/workflows/branch.yml"
- ".github/workflows/linting_comment.yml"
- ".github/workflows/linting.yml"
- "CODE_OF_CONDUCT.md"
- ".github/ISSUE_TEMPLATE/bug_report.yml"
- ".prettierignore"
nextflow_config:
- "custom_config" # TODO Remove this once the new methods are supported
- "manifest.name"
- "manifest.homePage"
- "params.genomes"
- "validation.help.beforeText"
- "validation.help.afterText"
- "validation.summary.beforeText"
- "validation.summary.afterText"
multiqc_config:
- "report_comment"
actions_ci: false # TODO readd this once the linting doesn't act up
nf_core_version: 3.0.0dev
repository_type: pipeline
template:
author: nvnieuwk
description: A nextflow pipeline for calling and annotating small germline variants
from short DNA reads for WES and WGS data
name: germline
prefix: nf-cmgg