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modules.json
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modules.json
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{
"name": "nf-cmgg/structural",
"homePage": "https://github.com/nf-cmgg/structural",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"annotsv/annotsv": {
"branch": "master",
"git_sha": "a94ad45fa5b350961c374c46f79bc86cd5853353",
"installed_by": ["modules"]
},
"annotsv/installannotations": {
"branch": "master",
"git_sha": "a94ad45fa5b350961c374c46f79bc86cd5853353",
"installed_by": ["modules"]
},
"bcftools/annotate": {
"branch": "master",
"git_sha": "2ad29c2aed06d815d9f68ad7ba20b3b1c574ce9c",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/annotate/bcftools-annotate.diff"
},
"bcftools/concat": {
"branch": "master",
"git_sha": "b42fec6f7c6e5d0716685cabb825ef6bf6e386b5",
"installed_by": ["modules"]
},
"bcftools/filter": {
"branch": "master",
"git_sha": "a3893076a76e91b3ff152faddf872f00778fb224",
"installed_by": ["modules"],
"patch": "modules/nf-core/bcftools/filter/bcftools-filter.diff"
},
"bcftools/sort": {
"branch": "master",
"git_sha": "b42fec6f7c6e5d0716685cabb825ef6bf6e386b5",
"installed_by": ["modules"]
},
"bedgovcf": {
"branch": "master",
"git_sha": "71a96063a7e09be7ea48f069d134a56ce86c9ba6",
"installed_by": ["modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "6278bf9afd4a4b2d00fa6052250e73da3d91546f",
"installed_by": ["modules"]
},
"delly/call": {
"branch": "master",
"git_sha": "92bf2a8afa318a64f9d333cf87b510c662fd4274",
"installed_by": ["modules"],
"patch": "modules/nf-core/delly/call/delly-call.diff"
},
"ensemblvep/download": {
"branch": "master",
"git_sha": "3db4f8488315cd7d7cf3fcb64251f6603210e831",
"installed_by": ["modules"]
},
"ensemblvep/vep": {
"branch": "master",
"git_sha": "b42fec6f7c6e5d0716685cabb825ef6bf6e386b5",
"installed_by": ["modules"]
},
"expansionhunter": {
"branch": "master",
"git_sha": "b42fec6f7c6e5d0716685cabb825ef6bf6e386b5",
"installed_by": ["modules"]
},
"gawk": {
"branch": "master",
"git_sha": "b42fec6f7c6e5d0716685cabb825ef6bf6e386b5",
"installed_by": ["modules"]
},
"gridss/gridss": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"],
"patch": "modules/nf-core/gridss/gridss/gridss-gridss.diff"
},
"jasminesv": {
"branch": "master",
"git_sha": "92bf2a8afa318a64f9d333cf87b510c662fd4274",
"installed_by": ["modules"],
"patch": "modules/nf-core/jasminesv/jasminesv.diff"
},
"manta/convertinversion": {
"branch": "master",
"git_sha": "92bf2a8afa318a64f9d333cf87b510c662fd4274",
"installed_by": ["modules"]
},
"manta/germline": {
"branch": "master",
"git_sha": "ebc1733b77c702f19fe42076a5edfcbaa0d84f66",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
"installed_by": ["modules"]
},
"ngsbits/samplegender": {
"branch": "master",
"git_sha": "023e119cfa102f319b6dcfd06abecf7f3c2b8df1",
"installed_by": ["modules"]
},
"samtools/convert": {
"branch": "master",
"git_sha": "b42fec6f7c6e5d0716685cabb825ef6bf6e386b5",
"installed_by": ["modules"],
"patch": "modules/nf-core/samtools/convert/samtools-convert.diff"
},
"samtools/faidx": {
"branch": "master",
"git_sha": "f153f1f10e1083c49935565844cccb7453021682",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["modules"]
},
"smoove/call": {
"branch": "master",
"git_sha": "f2fdc5e81efe36beff213752ce1a8e71fceeacba",
"installed_by": ["modules"]
},
"svync": {
"branch": "master",
"git_sha": "3df1a372b844c98c31ec3446faac7c75e64518a3",
"installed_by": ["modules"]
},
"tabix/bgziptabix": {
"branch": "master",
"git_sha": "09d3c8c29b31a2dfd610305b10550f0e1dbcd4a9",
"installed_by": ["modules"]
},
"tabix/tabix": {
"branch": "master",
"git_sha": "9502adb23c0b97ed8e616bbbdfa73b4585aec9a1",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["modules"]
},
"vcfanno": {
"branch": "master",
"git_sha": "b558cd24f8751dcda51f957391f5f9cb83e28586",
"installed_by": ["modules"]
},
"wisecondorx/convert": {
"branch": "master",
"git_sha": "dc7e9607d9977555ca1235a51a40d097bc66954c",
"installed_by": ["modules"]
},
"wisecondorx/predict": {
"branch": "master",
"git_sha": "dc7e9607d9977555ca1235a51a40d097bc66954c",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
},
"utils_nfvalidation_plugin": {
"branch": "master",
"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
"installed_by": ["subworkflows"]
}
}
}
}
}
}