From 1e73ac987a6019c808fd3a0a825dfc27edec5abf Mon Sep 17 00:00:00 2001
From: Harihara <latchguest6@Latchs-MacBook-Pro.local>
Date: Sat, 5 Oct 2024 20:08:23 -0700
Subject: [PATCH] Updated code to add dummy tables for custom references

---
 wf/__init__.py | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/wf/__init__.py b/wf/__init__.py
index 2d3eaf30..d9430422 100644
--- a/wf/__init__.py
+++ b/wf/__init__.py
@@ -191,7 +191,7 @@ def nf_nf_core_atacseq(
     """
 
     pvc_name: str = initialize(run_name=run_name)
-    """NF_Run_Flag = nextflow_runtime(
+    NF_Run_Flag = nextflow_runtime(
         pvc_name=pvc_name,
         input=input,
         run_name=run_name,
@@ -256,8 +256,8 @@ def nf_nf_core_atacseq(
         skip_qc=skip_qc,
         skip_ataqv=skip_ataqv,
         multiqc_methods_description=multiqc_methods_description,
-    )"""
-    NF_Run_Flag = run_name
+    )
+    # NF_Run_Flag = run_name
     input_obj_list, outdir_r_plots = pp.Prepare_Inputs_ATACQC(
         run_flag=NF_Run_Flag, outdir=outdir, aligner=aligner, genome=latch_genome
     )