diff --git a/modules/nf-core/nanoq/environment.yml b/modules/nf-core/nanoq/environment.yml
new file mode 100644
index 00000000000..41448d5b31d
--- /dev/null
+++ b/modules/nf-core/nanoq/environment.yml
@@ -0,0 +1,9 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/environment-schema.json
+name: "nanoq"
+channels:
+  - conda-forge
+  - bioconda
+  - defaults
+dependencies:
+  - "bioconda::nanoq=0.10.0"
diff --git a/modules/nf-core/nanoq/main.nf b/modules/nf-core/nanoq/main.nf
new file mode 100644
index 00000000000..298ede2b7bc
--- /dev/null
+++ b/modules/nf-core/nanoq/main.nf
@@ -0,0 +1,48 @@
+process NANOQ {
+    tag "$meta.id"
+    label 'process_low'
+
+    conda "${moduleDir}/environment.yml"
+    container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://depot.galaxyproject.org/singularity/nanoq:0.10.0--h031d066_2' :
+        'biocontainers/nanoq:0.10.0--h031d066_2'}"
+
+    input:
+    tuple val(meta), path(ontreads)
+    val(output_format) //One of the following: fastq, fastq.gz, fastq.bz2, fastq.lzma, fasta, fasta.gz, fasta.bz2, fasta.lzma.
+
+    output:
+    tuple val(meta), path("*.stats")                                                  , emit: stats
+    tuple val(meta), path("*_nanoq.${output_format}")                                 , emit: reads
+    path "versions.yml"                                                               , emit: versions
+
+    when:
+    task.ext.when == null || task.ext.when
+
+    script:
+    def args = task.ext.args ?: ''
+    def prefix = task.ext.prefix ?: "${meta.id}_nanoq"
+    """
+    nanoq -i $ontreads \\
+        -r ${prefix}.stats \\
+        -o ${prefix}.$output_format
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        nanoq: \$(nanoq --version | sed -e 's/nanoq //g')
+    END_VERSIONS
+    """
+
+    stub:
+    def args = task.ext.args ?: ''
+    def prefix = task.ext.prefix ?: "${meta.id}_nanoq"
+    """
+    echo "" | gzip > ${prefix}.$output_format
+    touch ${prefix}.stats
+
+    cat <<-END_VERSIONS > versions.yml
+    "${task.process}":
+        nanoq: \$(nanoq --version | sed -e 's/nanoq //g')
+    END_VERSIONS
+    """
+}
diff --git a/modules/nf-core/nanoq/meta.yml b/modules/nf-core/nanoq/meta.yml
new file mode 100644
index 00000000000..87fd2f41d9e
--- /dev/null
+++ b/modules/nf-core/nanoq/meta.yml
@@ -0,0 +1,60 @@
+---
+# yaml-language-server: $schema=https://raw.githubusercontent.com/nf-core/modules/master/modules/meta-schema.json
+name: "nanoq"
+description: Nanoq implements ultra-fast read filters and summary reports for high-throughput nanopore reads.
+keywords:
+  - nanoq
+  - Read filters
+  - Read trimming
+  - Read report
+tools:
+  - "nanoq":
+      description: "Ultra-fast quality control and summary reports for nanopore reads"
+      homepage: "https://github.com/esteinig/nanoq"
+      documentation: "https://github.com/esteinig/nanoq"
+      tool_dev_url: "https://github.com/esteinig/nanoq"
+      doi: "10.21105/joss.02991"
+      licence: ["MIT"]
+
+input:
+  - meta:
+      type: map
+      description: |
+        Groovy Map containing sample information
+        e.g. `[ id:'sample1', single_end:false ]`
+
+  - ontreads:
+      type: file
+      description: Compressed or uncompressed nanopore reads in fasta or fastq formats.
+      pattern: "*.{fa,fna,faa,fasta,fq,fastq}{,.gz,.bz2,.xz}"
+
+  - output_format:
+      type: string
+      description: "Specifies the output format. One of these formats: fasta, fastq; fasta.gz, fastq.gz; fasta.bz2, fastq.bz2; fasta.lzma, fastq.lzma."
+
+output:
+  - meta:
+      type: map
+      description: |
+        Groovy Map containing sample information
+        e.g. `[ id:'sample1', single_end:false ]`
+
+  - stats:
+      type: file
+      description: Summary report of reads statistics.
+      pattern: "*.stats"
+
+  - reads:
+      type: file
+      description: Filtered reads.
+      pattern: "*.{fasta,fastq}{,.gz,.bz2,.lzma}"
+
+  - versions:
+      type: file
+      description: File containing software versions
+      pattern: "versions.yml"
+
+authors:
+  - "@LilyAnderssonLee"
+maintainers:
+  - "@LilyAnderssonLee"
diff --git a/modules/nf-core/nanoq/tests/main.nf.test b/modules/nf-core/nanoq/tests/main.nf.test
new file mode 100644
index 00000000000..1dfbae33740
--- /dev/null
+++ b/modules/nf-core/nanoq/tests/main.nf.test
@@ -0,0 +1,122 @@
+nextflow_process {
+
+    name "Test Process NANOQ"
+    script "../main.nf"
+    process "NANOQ"
+
+    tag "modules"
+    tag "modules_nfcore"
+    tag "nanoq"
+
+    test("sarscov2 - nanopore_uncompressed") {
+
+        when {
+            process {
+                """
+                input[0] = [
+                    [ id:'test', single_end:true ], // meta map
+                    file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true)
+                ]
+
+                input[1] = 'fastq'
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+    test("sarscov2 - nanopore_compressed_gz") {
+
+        when {
+            process {
+                """
+                input[0] = [
+                    [ id:'test', single_end:true ], // meta map
+                    file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true)
+                ]
+                input[1] = 'fastq.gz'
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+    test("sarscov2 - nanopore_compressed_bz2") {
+
+        when {
+            process {
+                """
+                input[0] = [
+                    [ id:'test', single_end:true ], // meta map
+                    file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true)
+                ]
+                input[1] = 'fastq.bz2'
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+    test("sarscov2 - nanopore_compressed_lzma") {
+
+        when {
+            process {
+                """
+                input[0] = [
+                    [ id:'test', single_end:true ], // meta map
+                    file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true)
+                ]
+                input[1] = 'fastq.lzma'
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+    }
+
+    test("sarscov2 - nanopore_compressed_gz - stub") {
+
+        options "-stub"
+
+        when {
+            process {
+                """
+                input[0] = [
+                    [ id:'test', single_end:true ], // meta map
+                    file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true)
+                    ]
+                    input[1] = 'fastq.gz'
+                """
+            }
+        }
+
+        then {
+            assertAll(
+                { assert process.success },
+                { assert snapshot(process.out).match() }
+            )
+        }
+
+    }
+}
diff --git a/modules/nf-core/nanoq/tests/main.nf.test.snap b/modules/nf-core/nanoq/tests/main.nf.test.snap
new file mode 100644
index 00000000000..e9f6b8b5453
--- /dev/null
+++ b/modules/nf-core/nanoq/tests/main.nf.test.snap
@@ -0,0 +1,267 @@
+{
+    "sarscov2 - nanopore_compressed_gz": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,5ab32af3352dfeca8268e10edf6e4dbe"
+                    ]
+                ],
+                "1": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq.gz:md5,7567d853ada6ac142332619d0b541d76"
+                    ]
+                ],
+                "2": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ],
+                "reads": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq.gz:md5,7567d853ada6ac142332619d0b541d76"
+                    ]
+                ],
+                "stats": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,5ab32af3352dfeca8268e10edf6e4dbe"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.04.1"
+        },
+        "timestamp": "2024-07-02T10:00:12.328317"
+    },
+    "sarscov2 - nanopore_compressed_gz - stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
+                    ]
+                ],
+                "2": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ],
+                "reads": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq.gz:md5,68b329da9893e34099c7d8ad5cb9c940"
+                    ]
+                ],
+                "stats": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.04.1"
+        },
+        "timestamp": "2024-07-02T10:00:24.873908"
+    },
+    "sarscov2 - nanopore_compressed_bz2": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,5ab32af3352dfeca8268e10edf6e4dbe"
+                    ]
+                ],
+                "1": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq.bz2:md5,b53cf14fd4eb5b16c459c41f03cc8a4b"
+                    ]
+                ],
+                "2": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ],
+                "reads": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq.bz2:md5,b53cf14fd4eb5b16c459c41f03cc8a4b"
+                    ]
+                ],
+                "stats": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,5ab32af3352dfeca8268e10edf6e4dbe"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.04.1"
+        },
+        "timestamp": "2024-07-02T10:00:16.460467"
+    },
+    "sarscov2 - nanopore_compressed_lzma": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,5ab32af3352dfeca8268e10edf6e4dbe"
+                    ]
+                ],
+                "1": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq.lzma:md5,65dda701689f913734dc245b68c89e07"
+                    ]
+                ],
+                "2": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ],
+                "reads": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq.lzma:md5,65dda701689f913734dc245b68c89e07"
+                    ]
+                ],
+                "stats": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,5ab32af3352dfeca8268e10edf6e4dbe"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.04.1"
+        },
+        "timestamp": "2024-07-02T10:00:20.825269"
+    },
+    "sarscov2 - nanopore_uncompressed": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,5ab32af3352dfeca8268e10edf6e4dbe"
+                    ]
+                ],
+                "1": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq:md5,7567d853ada6ac142332619d0b541d76"
+                    ]
+                ],
+                "2": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ],
+                "reads": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.fastq:md5,7567d853ada6ac142332619d0b541d76"
+                    ]
+                ],
+                "stats": [
+                    [
+                        {
+                            "id": "test",
+                            "single_end": true
+                        },
+                        "test_nanoq.stats:md5,5ab32af3352dfeca8268e10edf6e4dbe"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,7a40efe417ff7dbb9e91e9c1629a04e6"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.04.1"
+        },
+        "timestamp": "2024-07-02T10:00:07.8772"
+    }
+}
\ No newline at end of file
diff --git a/modules/nf-core/nanoq/tests/tags.yml b/modules/nf-core/nanoq/tests/tags.yml
new file mode 100644
index 00000000000..37457df1765
--- /dev/null
+++ b/modules/nf-core/nanoq/tests/tags.yml
@@ -0,0 +1,2 @@
+nanoq:
+  - "modules/nf-core/nanoq/**"