diff --git a/modules/nf-core/antismash/antismashlite/tests/main.nf.test.snap b/modules/nf-core/antismash/antismashlite/tests/main.nf.test.snap
index 675829cd715..618b06f965a 100644
--- a/modules/nf-core/antismash/antismashlite/tests/main.nf.test.snap
+++ b/modules/nf-core/antismash/antismashlite/tests/main.nf.test.snap
@@ -294,8 +294,8 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-02-09T17:06:15.671842533"
+        "timestamp": "2024-07-11T16:35:51.079804"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/antismash/antismashlitedownloaddatabases/tests/main.nf.test b/modules/nf-core/antismash/antismashlitedownloaddatabases/tests/main.nf.test
index bc7b5a80553..55f5f2f50a1 100644
--- a/modules/nf-core/antismash/antismashlitedownloaddatabases/tests/main.nf.test
+++ b/modules/nf-core/antismash/antismashlitedownloaddatabases/tests/main.nf.test
@@ -10,46 +10,47 @@ nextflow_process {
     tag "antismash/antismashlitedownloaddatabases"
     tag "untar"
 
-    setup {
+    test("antiSMASH-lite downloaddatabases") {
 
-        run("UNTAR", alias: "UNTAR_CSS") {
-            script "modules/nf-core/untar/main.nf"
-            process {
-            """
-            input[0] = [
-                [ ],
-                file('https://github.com/nf-core/test-datasets/raw/59ddeb5929f89ddddaff292d67f9025812762b87/data/delete_me/antismash/css.tar.gz', checkIfExists: true)
-            ]
-            """
+        setup {
+
+            run("UNTAR", alias: "UNTAR_CSS") {
+                script "modules/nf-core/untar/main.nf"
+                process {
+                """
+                input[0] = [
+                    [ ],
+                    file('https://github.com/nf-core/test-datasets/raw/59ddeb5929f89ddddaff292d67f9025812762b87/data/delete_me/antismash/css.tar.gz', checkIfExists: true)
+                ]
+                """
+                }
             }
-        }
 
-        run("UNTAR", alias: "UNTAR_DETECTION") {
-            script "modules/nf-core/untar/main.nf"
-            process {
-            """
-            input[0] = [
-                [ ],
-                file('https://github.com/nf-core/test-datasets/raw/59ddeb5929f89ddddaff292d67f9025812762b87/data/delete_me/antismash/detection.tar.gz', checkIfExists: true)
-            ]
-            """
+            run("UNTAR", alias: "UNTAR_DETECTION") {
+                script "modules/nf-core/untar/main.nf"
+                process {
+                """
+                input[0] = [
+                    [ ],
+                    file('https://github.com/nf-core/test-datasets/raw/59ddeb5929f89ddddaff292d67f9025812762b87/data/delete_me/antismash/detection.tar.gz', checkIfExists: true)
+                ]
+                """
+                }
             }
-        }
 
-        run("UNTAR", alias: "UNTAR_MODULES") {
-            script "modules/nf-core/untar/main.nf"
-            process {
-            """
-            input[0] = [
-                [ ],
-                file('https://github.com/nf-core/test-datasets/raw/59ddeb5929f89ddddaff292d67f9025812762b87/data/delete_me/antismash/modules.tar.gz', checkIfExists: true)
-            ]
-            """
+            run("UNTAR", alias: "UNTAR_MODULES") {
+                script "modules/nf-core/untar/main.nf"
+                process {
+                """
+                input[0] = [
+                    [ ],
+                    file('https://github.com/nf-core/test-datasets/raw/59ddeb5929f89ddddaff292d67f9025812762b87/data/delete_me/antismash/modules.tar.gz', checkIfExists: true)
+                ]
+                """
+                }
             }
         }
-    }
 
-test("antiSMASH-lite downloaddatabases") {
         when {
             process {
                 """
@@ -64,18 +65,56 @@ test("antiSMASH-lite downloaddatabases") {
             assertAll(
                 { assert process.success },
                 { assert snapshot (
-                     file(process.out.database.get(0)).list().sort(),
-                     process.out.versions,
+                    file(process.out.database.get(0)).list().sort(),
+                    process.out.versions,
                 ).match() }
             )
         }
-
     }
 
     test("antiSMASH-lite downloaddatabases - stub") {
 
         options "-stub"
 
+        setup {
+
+            run("UNTAR", alias: "UNTAR_CSS") {
+                script "modules/nf-core/untar/main.nf"
+                process {
+                """
+                input[0] = [
+                    [ ],
+                    file('https://github.com/nf-core/test-datasets/raw/59ddeb5929f89ddddaff292d67f9025812762b87/data/delete_me/antismash/css.tar.gz', checkIfExists: true)
+                ]
+                """
+                }
+            }
+
+            run("UNTAR", alias: "UNTAR_DETECTION") {
+                script "modules/nf-core/untar/main.nf"
+                process {
+                """
+                input[0] = [
+                    [ ],
+                    file('https://github.com/nf-core/test-datasets/raw/59ddeb5929f89ddddaff292d67f9025812762b87/data/delete_me/antismash/detection.tar.gz', checkIfExists: true)
+                ]
+                """
+                }
+            }
+
+            run("UNTAR", alias: "UNTAR_MODULES") {
+                script "modules/nf-core/untar/main.nf"
+                process {
+                """
+                input[0] = [
+                    [ ],
+                    file('https://github.com/nf-core/test-datasets/raw/59ddeb5929f89ddddaff292d67f9025812762b87/data/delete_me/antismash/modules.tar.gz', checkIfExists: true)
+                ]
+                """
+                }
+            }
+        }
+
         when {
             process {
                 """
@@ -92,7 +131,5 @@ test("antiSMASH-lite downloaddatabases") {
                 { assert snapshot(process.out).match() }
             )
         }
-
     }
-
 }
diff --git a/modules/nf-core/antismash/antismashlitedownloaddatabases/tests/main.nf.test.snap b/modules/nf-core/antismash/antismashlitedownloaddatabases/tests/main.nf.test.snap
index 93d071871fa..21ee9d410f5 100644
--- a/modules/nf-core/antismash/antismashlitedownloaddatabases/tests/main.nf.test.snap
+++ b/modules/nf-core/antismash/antismashlitedownloaddatabases/tests/main.nf.test.snap
@@ -32,9 +32,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-02-07T23:13:12.85814463"
+        "timestamp": "2024-07-12T13:41:29.456143"
     },
     "antiSMASH-lite downloaddatabases": {
         "content": [
@@ -55,8 +55,8 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-02-07T23:12:29.947339678"
+        "timestamp": "2024-07-12T13:41:08.116244"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/bracken/build/tests/main.nf.test b/modules/nf-core/bracken/build/tests/main.nf.test
index f4168a7eb1c..781c1518436 100644
--- a/modules/nf-core/bracken/build/tests/main.nf.test
+++ b/modules/nf-core/bracken/build/tests/main.nf.test
@@ -10,18 +10,18 @@ nextflow_process {
     tag "bracken/build"
     tag "untar"
 
-    setup {
-        run ("UNTAR") {
-            script "../../../untar/main.nf"
-            process {
-                """
-                input[0] = [[id: 'db'],file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/db/kraken2_intermediate.tar.gz', checkIfExists: true)]
-                """
+    test("kraken2 - db") {
+
+        setup {
+            run ("UNTAR") {
+                script "../../../untar/main.nf"
+                process {
+                    """
+                    input[0] = [[id: 'db'],file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/db/kraken2_intermediate.tar.gz', checkIfExists: true)]
+                    """
+                }
             }
         }
-    }
-
-    test("kraken2 - db") {
 
         when {
             process {
@@ -41,6 +41,7 @@ nextflow_process {
                         file("${process.out.bracken_files[0][1]}/database100mers.kmer_distrib").name,
                         file("${process.out.bracken_files[0][1]}/database100mers.kraken").name,
                         file("${process.out.bracken_files[0][1]}/database.kraken").name,
+                        process.out.versions
                     ).match()
                 }
             )
@@ -52,6 +53,17 @@ nextflow_process {
 
         options "-stub"
 
+        setup {
+            run ("UNTAR") {
+                script "../../../untar/main.nf"
+                process {
+                    """
+                    input[0] = [[id: 'db'],file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/db/kraken2_intermediate.tar.gz', checkIfExists: true)]
+                    """
+                }
+            }
+        }
+
         when {
             process {
                 """
@@ -66,7 +78,5 @@ nextflow_process {
                 { assert snapshot(process.out).match() }
             )
         }
-
     }
-
 }
diff --git a/modules/nf-core/bracken/build/tests/main.nf.test.snap b/modules/nf-core/bracken/build/tests/main.nf.test.snap
index 49f4240fee7..910e314aa41 100644
--- a/modules/nf-core/bracken/build/tests/main.nf.test.snap
+++ b/modules/nf-core/bracken/build/tests/main.nf.test.snap
@@ -6,13 +6,16 @@
             "database.kraken",
             "database100mers.kmer_distrib",
             "database100mers.kraken",
-            "database.kraken"
+            "database.kraken",
+            [
+                "versions.yml:md5,925c6ae1387eaf6dbd14656125bc6d9b"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-04-17T18:41:03.693430543"
+        "timestamp": "2024-07-12T13:45:17.37462"
     },
     "kraken2 - db - stub": {
         "content": [
@@ -26,7 +29,28 @@
                             "database.kraken:md5,d41d8cd98f00b204e9800998ecf8427e",
                             "database100mers.kmer_distrib:md5,d41d8cd98f00b204e9800998ecf8427e",
                             "database100mers.kraken:md5,d41d8cd98f00b204e9800998ecf8427e",
-                            "file.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                            "hash.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            [
+                                [
+                                    "G46z5ZvKEd.fna:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "G46z5ZvKEd.fna.masked:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "prelim_map.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "prelim_map_MtGz4nUfR3.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "prelim_map_eNakvrOVZm.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "z_4A5lulyr.fna:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "z_4A5lulyr.fna.masked:md5,d41d8cd98f00b204e9800998ecf8427e"
+                                ]
+                            ],
+                            "opts.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            "seqid2taxid.map:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            "taxo.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            [
+                                "names.dmp:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                "nodes.dmp:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                "nucl_gb.accession2taxid:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                "prelim_map.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                            ],
+                            "unmapped.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
                         ]
                     ]
                 ],
@@ -66,7 +90,28 @@
                             "database.kraken:md5,d41d8cd98f00b204e9800998ecf8427e",
                             "database100mers.kmer_distrib:md5,d41d8cd98f00b204e9800998ecf8427e",
                             "database100mers.kraken:md5,d41d8cd98f00b204e9800998ecf8427e",
-                            "file.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                            "hash.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            [
+                                [
+                                    "G46z5ZvKEd.fna:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "G46z5ZvKEd.fna.masked:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "prelim_map.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "prelim_map_MtGz4nUfR3.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "prelim_map_eNakvrOVZm.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "z_4A5lulyr.fna:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                    "z_4A5lulyr.fna.masked:md5,d41d8cd98f00b204e9800998ecf8427e"
+                                ]
+                            ],
+                            "opts.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            "seqid2taxid.map:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            "taxo.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            [
+                                "names.dmp:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                "nodes.dmp:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                "nucl_gb.accession2taxid:md5,d41d8cd98f00b204e9800998ecf8427e",
+                                "prelim_map.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                            ],
+                            "unmapped.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
                         ]
                     ]
                 ],
@@ -77,8 +122,8 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-04-17T18:41:14.406736156"
+        "timestamp": "2024-07-12T13:45:26.452181"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/centrifuge/centrifuge/tests/main.nf.test b/modules/nf-core/centrifuge/centrifuge/tests/main.nf.test
index d83b522abd2..f2713608572 100644
--- a/modules/nf-core/centrifuge/centrifuge/tests/main.nf.test
+++ b/modules/nf-core/centrifuge/centrifuge/tests/main.nf.test
@@ -42,10 +42,10 @@ nextflow_process {
                     file(process.out.results[0][1]).name,
                     file(process.out.fastq_mapped[0][1][0]).name,
                     file(process.out.fastq_unmapped[0][1][0]).name,
+                    process.out.versions
                 ).match() }
             )
         }
-
     }
 
     test("sarscov2_fastq_pe") {
@@ -56,8 +56,8 @@ nextflow_process {
                 input[0] = [
                                 [ id:'test', single_end:false ], // meta map
                                 [ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
-                                  file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
-                           ]
+                                file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
+                        ]
                 input[1] = UNTAR.out.untar.map{ it[1] }
                 input[2] = true
                 input[3] = true
@@ -73,10 +73,10 @@ nextflow_process {
                     file(process.out.results[0][1]).name,
                     file(process.out.fastq_mapped[0][1][0]).name,
                     file(process.out.fastq_unmapped[0][1][0]).name,
+                    process.out.versions
                 ).match() }
             )
         }
-
     }
 
     test("sarscov2_fastq_se_stub") {
@@ -100,7 +100,5 @@ nextflow_process {
                 { assert snapshot(process.out).match() }
             )
         }
-
     }
-
 }
diff --git a/modules/nf-core/centrifuge/centrifuge/tests/main.nf.test.snap b/modules/nf-core/centrifuge/centrifuge/tests/main.nf.test.snap
index f8a2ef7b8b6..a981e51793f 100644
--- a/modules/nf-core/centrifuge/centrifuge/tests/main.nf.test.snap
+++ b/modules/nf-core/centrifuge/centrifuge/tests/main.nf.test.snap
@@ -92,34 +92,40 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-02-02T07:47:36.886757827"
+        "timestamp": "2024-07-09T10:36:42.919054"
     },
     "sarscov2_fastq_se": {
         "content": [
             "test.report.txt",
             "test.results.txt",
             "",
-            ""
+            "",
+            [
+                "versions.yml:md5,1ce028d9f968eca6df31586fe3b77c84"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-02-02T08:22:31.470316024"
+        "timestamp": "2024-07-09T10:36:23.087465"
     },
     "sarscov2_fastq_pe": {
         "content": [
             "test.report.txt",
             "test.results.txt",
             "test.mapped.fastq.1.gz",
-            "test.unmapped.fastq.1.gz"
+            "test.unmapped.fastq.1.gz",
+            [
+                "versions.yml:md5,1ce028d9f968eca6df31586fe3b77c84"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-02-02T08:22:48.866073154"
+        "timestamp": "2024-07-09T10:36:33.471335"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/centrifuge/kreport/tests/main.nf.test b/modules/nf-core/centrifuge/kreport/tests/main.nf.test
index 6347bd7cc50..6d4bc6b1d2a 100644
--- a/modules/nf-core/centrifuge/kreport/tests/main.nf.test
+++ b/modules/nf-core/centrifuge/kreport/tests/main.nf.test
@@ -50,8 +50,9 @@ nextflow_process {
                 { assert process.success },
                 { assert snapshot(
                     file(process.out.kreport[0][1]).name,
+                    process.out.versions
                 ).match() }
-             )
+            )
         }
 
     }
@@ -75,7 +76,5 @@ nextflow_process {
                 { assert snapshot(process.out).match() }
             )
         }
-
     }
-
 }
diff --git a/modules/nf-core/centrifuge/kreport/tests/main.nf.test.snap b/modules/nf-core/centrifuge/kreport/tests/main.nf.test.snap
index 4e0aaa79182..3d638acd8b9 100644
--- a/modules/nf-core/centrifuge/kreport/tests/main.nf.test.snap
+++ b/modules/nf-core/centrifuge/kreport/tests/main.nf.test.snap
@@ -30,18 +30,21 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-02-02T06:18:36.794405448"
+        "timestamp": "2024-07-09T10:37:05.883784"
     },
     "sarscov2_fastq_se": {
         "content": [
-            "test.txt"
+            "test.txt",
+            [
+                "versions.yml:md5,43c766a19f2edf7e05d1a2a0b1816b13"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-02-02T06:28:20.461891873"
+        "timestamp": "2024-07-09T10:36:53.971559"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/checkv/updatedatabase/tests/main.nf.test b/modules/nf-core/checkv/updatedatabase/tests/main.nf.test
index 2f59da973fa..5a82c80e539 100644
--- a/modules/nf-core/checkv/updatedatabase/tests/main.nf.test
+++ b/modules/nf-core/checkv/updatedatabase/tests/main.nf.test
@@ -48,6 +48,8 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
+                { assert new File("${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.dmnd.log").exists() },
+                { assert new File("${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.dmnd").exists() },
                 { assert snapshot(
                     "${process.out.checkv_db.get(0).get(1).get(0)}",
                     "${process.out.checkv_db.get(0).get(1).get(2)}",
@@ -57,11 +59,10 @@ nextflow_process {
                     "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.faa",
                     "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.fna",
                     "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.log",
-                    "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.tsv"
+                    "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.tsv",
+                    process.out.versions
                     ).match()
                 },
-                { assert new File("${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.dmnd.log").exists() },
-                { assert new File("${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.dmnd").exists() }
             )
         }
     }
@@ -84,6 +85,8 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
+                { assert new File("${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.dmnd.log").exists() },
+                { assert new File("${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.dmnd").exists() },
                 { assert snapshot(
                     "${process.out.checkv_db.get(0).get(1).get(0)}",
                     "${process.out.checkv_db.get(0).get(1).get(2)}",
@@ -93,11 +96,10 @@ nextflow_process {
                     "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.faa",
                     "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.fna",
                     "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.log",
-                    "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.tsv"
+                    "${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.tsv",
+                    process.out.versions
                     ).match()
-                },
-                { assert new File("${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.dmnd.log").exists() },
-                { assert new File("${process.out.checkv_db.get(0).get(1).get(1)}/checkv_reps.dmnd").exists() }
+                }
             )
         }
     }
diff --git a/modules/nf-core/checkv/updatedatabase/tests/main.nf.test.snap b/modules/nf-core/checkv/updatedatabase/tests/main.nf.test.snap
index e10cfce143e..d0a06a2713c 100644
--- a/modules/nf-core/checkv/updatedatabase/tests/main.nf.test.snap
+++ b/modules/nf-core/checkv/updatedatabase/tests/main.nf.test.snap
@@ -15,9 +15,16 @@
             "checkv_reps.faa:md5,6f1e81fbab2d6f39367e3a037df1eec9",
             "checkv_reps.fna:md5,5f7b89beb65e7405ff2214c2a7c981ba",
             "checkv_reps.log:md5,ebd0238f4df0fa5f3a8af40cd2646f84",
-            "checkv_reps.tsv:md5,ccb5c738991f63618ecf9c20c9afa69c"
+            "checkv_reps.tsv:md5,ccb5c738991f63618ecf9c20c9afa69c",
+            [
+                "versions.yml:md5,e2bdb90d427b1d7b5d3ff4555230cdcd"
+            ]
         ],
-        "timestamp": "2024-01-17T17:19:49.436344753"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-09T10:39:34.796067"
     },
     "sarscov2 - genome - genome_fasta": {
         "content": [
@@ -35,8 +42,15 @@
             "checkv_reps.faa:md5,6f1e81fbab2d6f39367e3a037df1eec9",
             "checkv_reps.fna:md5,5f7b89beb65e7405ff2214c2a7c981ba",
             "checkv_reps.log:md5,ebd0238f4df0fa5f3a8af40cd2646f84",
-            "checkv_reps.tsv:md5,ccb5c738991f63618ecf9c20c9afa69c"
+            "checkv_reps.tsv:md5,ccb5c738991f63618ecf9c20c9afa69c",
+            [
+                "versions.yml:md5,e2bdb90d427b1d7b5d3ff4555230cdcd"
+            ]
         ],
-        "timestamp": "2023-12-11T15:51:27.123218646"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-09T10:39:17.749242"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/controlfreec/freec/tests/main.nf.test b/modules/nf-core/controlfreec/freec/tests/main.nf.test
index 90312aebc80..8e38becdfdc 100644
--- a/modules/nf-core/controlfreec/freec/tests/main.nf.test
+++ b/modules/nf-core/controlfreec/freec/tests/main.nf.test
@@ -70,9 +70,9 @@ nextflow_process {
                     path(process.out.BAF.get(0).get(1)).readLines()[0],
                     path(process.out.ratio.get(0).get(1)).readLines()[0],
                     path(process.out.config.get(0).get(1)).readLines()[0],
-                    path(process.out.info.get(0).get(1)).readLines()[0]
-                    ).match() },
-                { assert snapshot(process.out.versions).match("version") }
+                    path(process.out.info.get(0).get(1)).readLines()[0],
+                    process.out.versions
+                    ).match() }
             )
         }
 
@@ -159,7 +159,5 @@ nextflow_process {
                 { assert snapshot(process.out).match() }
             )
         }
-
     }
-
 }
diff --git a/modules/nf-core/controlfreec/freec/tests/main.nf.test.snap b/modules/nf-core/controlfreec/freec/tests/main.nf.test.snap
index 39850d02564..eb0c468ae65 100644
--- a/modules/nf-core/controlfreec/freec/tests/main.nf.test.snap
+++ b/modules/nf-core/controlfreec/freec/tests/main.nf.test.snap
@@ -178,21 +178,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.0"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-03-26T13:42:56.629043"
-    },
-    "version": {
-        "content": [
-            [
-                "versions.yml:md5,e704fc0e6d1ac333dc419498fa128769"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.0"
-        },
-        "timestamp": "2024-03-27T10:01:40.977048"
+        "timestamp": "2024-07-09T10:41:07.003311"
     },
     "human - mpileup": {
         "content": [
@@ -201,12 +189,15 @@
             "Chromosome\tPosition\tBAF\tFittedA\tFittedB\tA\tB\tuncertainty",
             "Chromosome\tStart\tRatio\tMedianRatio\tCopyNumber\tBAF\testimatedBAF\tGenotype\tUncertaintyOfGT",
             "[general]",
-            "Program_Version\tv11.6"
+            "Program_Version\tv11.6",
+            [
+                "versions.yml:md5,e704fc0e6d1ac333dc419498fa128769"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.0"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-03-27T10:14:50.936823"
+        "timestamp": "2024-07-09T10:40:42.538035"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/custom/tabulartogseacls/environment.yml b/modules/nf-core/custom/tabulartogseacls/environment.yml
index 96c3276dfb6..89ed4246ef0 100644
--- a/modules/nf-core/custom/tabulartogseacls/environment.yml
+++ b/modules/nf-core/custom/tabulartogseacls/environment.yml
@@ -4,4 +4,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - conda-forge::coreutils=9.1
+  - conda-forge::coreutils=8.30
diff --git a/modules/nf-core/custom/tabulartogseagct/environment.yml b/modules/nf-core/custom/tabulartogseagct/environment.yml
index 73cd511d2c6..bb55b68a08e 100644
--- a/modules/nf-core/custom/tabulartogseagct/environment.yml
+++ b/modules/nf-core/custom/tabulartogseagct/environment.yml
@@ -4,4 +4,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - conda-forge::coreutils=9.1
+  - conda-forge::coreutils=8.30
diff --git a/modules/nf-core/custom/tx2gene/tests/main.nf.test.snap b/modules/nf-core/custom/tx2gene/tests/main.nf.test.snap
index 7bc258353e9..c19f10f7162 100644
--- a/modules/nf-core/custom/tx2gene/tests/main.nf.test.snap
+++ b/modules/nf-core/custom/tx2gene/tests/main.nf.test.snap
@@ -61,8 +61,8 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "24.04.2"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-05T13:13:24.237507"
+        "timestamp": "2024-07-10T15:15:34.064489"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test b/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test
index 9c207b30744..5fef5dd2544 100644
--- a/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test
+++ b/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test
@@ -17,11 +17,11 @@ nextflow_process {
                 """
                 // [meta, vcf, tbi, interval, interval_value, workspace ]
                 input[0] = [ [ id:'test'],
-                       file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz', checkIfExists: true) ,
-                       file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz.tbi', checkIfExists: true) ,
-                       file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.interval_list', checkIfExists: true) ,
-                       [] ,
-                       [] ]
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz', checkIfExists: true) ,
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz.tbi', checkIfExists: true) ,
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.interval_list', checkIfExists: true) ,
+                    [] ,
+                    [] ]
                 // run_intlist
                 input[1] = false
                 // run_updatewspace
@@ -36,12 +36,14 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(file(process.out.genomicsdb.get(0).get(1)).list().sort()).match() }
                 //{ assert snapshot(file(process.out.updatedb.get(0).get(1)).list().sort()).match() }
                 //{ assert snapshot(process.out.intervallist.get(0).get(1)).match() }
+                { assert snapshot(
+                    file(process.out.genomicsdb.get(0).get(1)).list().sort(),
+                    process.out.versions
+                ).match() }
             )
         }
-
     }
 
     test("test_gatk4_genomicsdbimport_get_intervalslist") {
@@ -76,10 +78,12 @@ nextflow_process {
                 { assert process.success },
                 //{ assert snapshot(file(process.out.genomicsdb.get(0).get(1)).list().sort()).match() }
                 //{ assert snapshot(file(process.out.updatedb.get(0).get(1)).list().sort()).match() }
-                { assert snapshot(process.out.intervallist.get(0).get(1)).match() }
+                { assert snapshot(
+                    process.out.intervallist.get(0).get(1),
+                    process.out.versions
+                ).match() }
             )
         }
-
     }
 
     test("test_gatk4_genomicsdbimport_update_genomicsdb") {
@@ -113,11 +117,13 @@ nextflow_process {
             assertAll(
                 { assert process.success },
                 //{ assert snapshot(file(process.out.genomicsdb.get(0).get(1)).list().sort()).match() }
-                { assert snapshot(file(process.out.updatedb.get(0).get(1)).list().sort()).match() }
                 //{ assert snapshot(process.out.intervallist.get(0).get(1)).match() }
+                { assert snapshot(
+                    file(process.out.updatedb.get(0).get(1)).list().sort(),
+                    process.out.versions
+                ).match() }
             )
         }
-
     }
 
     test("test_gatk4_genomicsdbimport_stub") {
@@ -129,11 +135,11 @@ nextflow_process {
                 """
                 // [meta, vcf, tbi, interval, interval_value, workspace ]
                 input[0] = [ [ id:'test'],
-                       file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz', checkIfExists: true) ,
-                       file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz.tbi', checkIfExists: true) ,
-                       file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.interval_list', checkIfExists: true) ,
-                       [] ,
-                       [] ]
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz', checkIfExists: true) ,
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/illumina/gvcf/test.genome.vcf.gz.tbi', checkIfExists: true) ,
+                    file(params.modules_testdata_base_path + 'genomics/homo_sapiens/genome/genome.interval_list', checkIfExists: true) ,
+                    [] ,
+                    [] ]
                 // run_intlist
                 input[1] = false
                 // run_updatewspace
@@ -147,9 +153,8 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
+                { assert snapshot(process.out).match()}
             )
         }
-
     }
-
 }
diff --git a/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test.snap b/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test.snap
index a633bbdc16c..55ced0d8802 100644
--- a/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test.snap
+++ b/modules/nf-core/gatk4/genomicsdbimport/tests/main.nf.test.snap
@@ -1,40 +1,98 @@
 {
     "test_gatk4_genomicsdbimport_get_intervalslist": {
         "content": [
-            "test.interval_list:md5,4c85812ac15fc1cd29711a851d23c0bf"
+            "test.interval_list:md5,4c85812ac15fc1cd29711a851d23c0bf",
+            [
+                "versions.yml:md5,c1233a04213021aa66599a36e0fb28cc"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "24.01.0"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-02-28T17:55:03.846241"
+        "timestamp": "2024-07-09T10:42:51.836379"
     },
     "test_gatk4_genomicsdbimport_create_genomicsdb": {
         "content": [
-            "__tiledb_workspace.tdb",
-            "callset.json",
-            "chr22$1$40001",
-            "vcfheader.vcf",
-            "vidmap.json"
+            [
+                "__tiledb_workspace.tdb",
+                "callset.json",
+                "chr22$1$40001",
+                "vcfheader.vcf",
+                "vidmap.json"
+            ],
+            [
+                "versions.yml:md5,c1233a04213021aa66599a36e0fb28cc"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-02-14T11:22:10.11423157"
+        "timestamp": "2024-07-09T10:42:36.846239"
     },
     "test_gatk4_genomicsdbimport_update_genomicsdb": {
         "content": [
-            "__tiledb_workspace.tdb",
-            "callset.json",
-            "chr22$1$40001",
-            "vcfheader.vcf",
-            "vidmap.json"
+            [
+                "__tiledb_workspace.tdb",
+                "callset.json",
+                "chr22$1$40001",
+                "vcfheader.vcf",
+                "vidmap.json"
+            ],
+            [
+                "versions.yml:md5,c1233a04213021aa66599a36e0fb28cc"
+            ]
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.2"
         },
-        "timestamp": "2024-02-14T12:46:42.403794676"
+        "timestamp": "2024-07-09T10:43:09.00769"
+    },
+    "test_gatk4_genomicsdbimport_stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "1": [
+                    
+                ],
+                "2": [
+                    
+                ],
+                "3": [
+                    "versions.yml:md5,c1233a04213021aa66599a36e0fb28cc"
+                ],
+                "genomicsdb": [
+                    [
+                        {
+                            "id": "test"
+                        },
+                        "test:md5,d41d8cd98f00b204e9800998ecf8427e"
+                    ]
+                ],
+                "intervallist": [
+                    
+                ],
+                "updatedb": [
+                    
+                ],
+                "versions": [
+                    "versions.yml:md5,c1233a04213021aa66599a36e0fb28cc"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-09T10:43:20.921712"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/gunzip/environment.yml b/modules/nf-core/gunzip/environment.yml
index 25910b340a5..dfc02a7b54e 100644
--- a/modules/nf-core/gunzip/environment.yml
+++ b/modules/nf-core/gunzip/environment.yml
@@ -4,4 +4,6 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - conda-forge::sed=4.7
+  - conda-forge::grep=3.11
+  - conda-forge::sed=4.8
+  - conda-forge::tar=1.34
diff --git a/modules/nf-core/gunzip/main.nf b/modules/nf-core/gunzip/main.nf
index 4ae609fb1cf..5e67e3b9bec 100644
--- a/modules/nf-core/gunzip/main.nf
+++ b/modules/nf-core/gunzip/main.nf
@@ -4,8 +4,8 @@ process GUNZIP {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
-        'nf-core/ubuntu:20.04' }"
+        'https://depot.galaxyproject.org/singularity/ubuntu:22.04' :
+        'nf-core/ubuntu:22.04' }"
 
     input:
     tuple val(meta), path(archive)
diff --git a/modules/nf-core/igv/js/environment.yml b/modules/nf-core/igv/js/environment.yml
index 7604b3c1012..e6046ef8437 100644
--- a/modules/nf-core/igv/js/environment.yml
+++ b/modules/nf-core/igv/js/environment.yml
@@ -4,4 +4,6 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - conda-forge::sed=4.7
+  - conda-forge::grep=3.11
+  - conda-forge::sed=4.8
+  - conda-forge::tar=1.34
diff --git a/modules/nf-core/igv/js/main.nf b/modules/nf-core/igv/js/main.nf
index ba4a1893f7a..a3cf3539aea 100644
--- a/modules/nf-core/igv/js/main.nf
+++ b/modules/nf-core/igv/js/main.nf
@@ -5,8 +5,8 @@ process IGV_JS {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
-        'nf-core/ubuntu:20.04' }"
+        'https://depot.galaxyproject.org/singularity/ubuntu:22.04' :
+        'nf-core/ubuntu:22.04' }"
 
     input:
     tuple val(meta), path(alignment), path(index)
diff --git a/modules/nf-core/kmcp/compute/tests/main.nf.test.snap b/modules/nf-core/kmcp/compute/tests/main.nf.test.snap
index 486cc73db81..a417de49094 100644
--- a/modules/nf-core/kmcp/compute/tests/main.nf.test.snap
+++ b/modules/nf-core/kmcp/compute/tests/main.nf.test.snap
@@ -48,9 +48,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "24.04.2"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-06-06T15:32:15.886382037"
+        "timestamp": "2024-07-10T12:16:52.057965"
     },
     "sarscov2 - fasta": {
         "content": [
diff --git a/modules/nf-core/kmcp/profile/tests/main.nf.test.snap b/modules/nf-core/kmcp/profile/tests/main.nf.test.snap
index 72b41ce8d61..f4a05eabfa6 100644
--- a/modules/nf-core/kmcp/profile/tests/main.nf.test.snap
+++ b/modules/nf-core/kmcp/profile/tests/main.nf.test.snap
@@ -30,9 +30,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "24.04.2"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-06-07T15:36:20.331533599"
+        "timestamp": "2024-07-10T15:07:59.876784"
     },
     "sarscov2 - fasta": {
         "content": [
diff --git a/modules/nf-core/last/train/main.nf b/modules/nf-core/last/train/main.nf
index 10bed777300..9f592b56e38 100644
--- a/modules/nf-core/last/train/main.nf
+++ b/modules/nf-core/last/train/main.nf
@@ -52,7 +52,7 @@ process LAST_TRAIN {
     def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
     """
-    INDEX_NAME=STUB
+    INDEX_NAME=\$(basename \$(ls $index/*.des) .des)
     touch ${prefix}.\$INDEX_NAME.train
     touch ${prefix}.train.tsv
 
diff --git a/modules/nf-core/last/train/tests/main.nf.test b/modules/nf-core/last/train/tests/main.nf.test
index 0055f7c05a7..a4168f2a9e9 100644
--- a/modules/nf-core/last/train/tests/main.nf.test
+++ b/modules/nf-core/last/train/tests/main.nf.test
@@ -44,7 +44,6 @@ nextflow_process {
                 { assert snapshot(process.out).match() }
             )
         }
-
     }
 
     test("sarscov2 - genome - contigs - stub") {
@@ -82,7 +81,5 @@ nextflow_process {
                 { assert snapshot(process.out).match() }
             )
         }
-
     }
-
 }
diff --git a/modules/nf-core/last/train/tests/main.nf.test.snap b/modules/nf-core/last/train/tests/main.nf.test.snap
index 703bcfa0152..a3a0cc8f000 100644
--- a/modules/nf-core/last/train/tests/main.nf.test.snap
+++ b/modules/nf-core/last/train/tests/main.nf.test.snap
@@ -8,7 +8,7 @@
                             "id": "contigs",
                             "single_end": false
                         },
-                        "contigs.STUB.train:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        "contigs..des.train:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "1": [
@@ -38,7 +38,7 @@
                             "id": "contigs",
                             "single_end": false
                         },
-                        "contigs.STUB.train:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        "contigs..des.train:md5,d41d8cd98f00b204e9800998ecf8427e"
                     ]
                 ],
                 "versions": [
@@ -48,9 +48,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "24.04.2"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-07-03T18:04:56.173906"
+        "timestamp": "2024-07-10T14:50:11.528587"
     },
     "sarscov2 - genome - contigs": {
         "content": [
diff --git a/modules/nf-core/metamaps/classify/tests/main.nf.test.snap b/modules/nf-core/metamaps/classify/tests/main.nf.test.snap
index 506ff28627c..86dd9872748 100644
--- a/modules/nf-core/metamaps/classify/tests/main.nf.test.snap
+++ b/modules/nf-core/metamaps/classify/tests/main.nf.test.snap
@@ -281,8 +281,8 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.04.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-06-12T10:56:30.641353"
+        "timestamp": "2024-07-11T16:36:38.639831"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/metamaps/mapdirectly/tests/main.nf.test.snap b/modules/nf-core/metamaps/mapdirectly/tests/main.nf.test.snap
index e552413685e..5a04623661e 100644
--- a/modules/nf-core/metamaps/mapdirectly/tests/main.nf.test.snap
+++ b/modules/nf-core/metamaps/mapdirectly/tests/main.nf.test.snap
@@ -84,9 +84,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.04.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-06-12T14:12:30.932597"
+        "timestamp": "2024-07-10T15:13:22.720676"
     },
     "sarscov2_nanopore_mapdirectly": {
         "content": [
diff --git a/modules/nf-core/mmseqs/createindex/tests/main.nf.test b/modules/nf-core/mmseqs/createindex/tests/main.nf.test
index f47ccc3757d..543c91b0093 100644
--- a/modules/nf-core/mmseqs/createindex/tests/main.nf.test
+++ b/modules/nf-core/mmseqs/createindex/tests/main.nf.test
@@ -8,6 +8,7 @@ nextflow_process {
     tag "modules_nfcore"
     tag "mmseqs"
     tag "mmseqs/createindex"
+    tag "untar"
 
     test("sars-cov-2 - mmseqs.tar.gz") {
 
diff --git a/modules/nf-core/mmseqs/createindex/tests/main.nf.test.snap b/modules/nf-core/mmseqs/createindex/tests/main.nf.test.snap
index b0fde15d69c..cd59a2fea63 100644
--- a/modules/nf-core/mmseqs/createindex/tests/main.nf.test.snap
+++ b/modules/nf-core/mmseqs/createindex/tests/main.nf.test.snap
@@ -5,7 +5,11 @@
                 "versions.yml:md5,63073370e7d20afd4773f5e6e7581582"
             ]
         ],
-        "timestamp": "2023-11-28T11:59:51.777561277"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-09T10:43:46.152721"
     },
     "createindex_filtered_files": {
         "content": [
@@ -49,6 +53,10 @@
                 "mmseqs_seq_h.index:md5,0040e6a02964914a87ef1efbe9011cbf"
             ]
         ],
-        "timestamp": "2023-11-28T11:59:51.728054679"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-09T10:43:46.077636"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/mmseqs/createtsv/tests/main.nf.test b/modules/nf-core/mmseqs/createtsv/tests/main.nf.test
index 99e79e0c8f2..e9d4f9949ca 100644
--- a/modules/nf-core/mmseqs/createtsv/tests/main.nf.test
+++ b/modules/nf-core/mmseqs/createtsv/tests/main.nf.test
@@ -123,8 +123,7 @@ nextflow_process {
         then {
             assertAll(
                 { assert process.success },
-                { assert snapshot(process.out.tsv).match("tsv") },
-                { assert snapshot(process.out.versions).match("versions") }
+                { assert snapshot(process.out).match() }
             )
         }
     }
diff --git a/modules/nf-core/mmseqs/createtsv/tests/main.nf.test.snap b/modules/nf-core/mmseqs/createtsv/tests/main.nf.test.snap
index 5b8f9569d27..1087de88d55 100644
--- a/modules/nf-core/mmseqs/createtsv/tests/main.nf.test.snap
+++ b/modules/nf-core/mmseqs/createtsv/tests/main.nf.test.snap
@@ -1,34 +1,4 @@
 {
-    "versions": {
-        "content": [
-            [
-                "versions.yml:md5,20a853f50c920d431e5ab7593ca79e6f"
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-03-12T11:53:02.392516336"
-    },
-    "tsv": {
-        "content": [
-            [
-                [
-                    {
-                        "id": "test_result",
-                        "single_end": true
-                    },
-                    "test_result.tsv:md5,4e7ba50ce2879660dc6595286bf0d097"
-                ]
-            ]
-        ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-03-12T11:53:02.311022721"
-    },
     "mmseqs/createtsv - bacteroides_fragilis - taxonomy - stub": {
         "content": [
             {
@@ -60,9 +30,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-03-12T11:53:11.715695614"
+        "timestamp": "2024-07-12T13:55:17.642787"
     },
     "mmseqs/createtsv - sarscov2 - cluster - stub": {
         "content": [
@@ -95,9 +65,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-03-12T11:53:21.386186911"
+        "timestamp": "2024-07-12T13:55:33.645454"
     },
     "mmseqs/createtsv - bacteroides_fragilis - taxonomy": {
         "content": [
@@ -130,8 +100,43 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
+        },
+        "timestamp": "2024-07-12T13:54:45.718678"
+    },
+    "mmseqs/createtsv - sarscov2 - cluster": {
+        "content": [
+            {
+                "0": [
+                    [
+                        {
+                            "id": "test_result",
+                            "single_end": true
+                        },
+                        "test_result.tsv:md5,4e7ba50ce2879660dc6595286bf0d097"
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,20a853f50c920d431e5ab7593ca79e6f"
+                ],
+                "tsv": [
+                    [
+                        {
+                            "id": "test_result",
+                            "single_end": true
+                        },
+                        "test_result.tsv:md5,4e7ba50ce2879660dc6595286bf0d097"
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,20a853f50c920d431e5ab7593ca79e6f"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-03-12T11:52:51.792345007"
+        "timestamp": "2024-07-12T13:55:02.731974"
     }
-}
+}
\ No newline at end of file
diff --git a/modules/nf-core/mmseqs/linclust/tests/main.nf.test b/modules/nf-core/mmseqs/linclust/tests/main.nf.test
index 02a6cd6259a..02383ae3409 100644
--- a/modules/nf-core/mmseqs/linclust/tests/main.nf.test
+++ b/modules/nf-core/mmseqs/linclust/tests/main.nf.test
@@ -8,6 +8,7 @@ nextflow_process {
     tag "modules_nfcore"
     tag "mmseqs"
     tag "mmseqs/linclust"
+    tag "untar"
 
     test("Should cluster an mmseqs database") {
 
@@ -40,12 +41,14 @@ nextflow_process {
                         File[] listOfFiles = folder.listFiles()
                         listOfFiles = listOfFiles.sort { it.name }
                         assert listOfFiles.length == 4
-                        assert snapshot("${get(0).get(1)}/${listOfFiles[0].name}").match("test_output_cluster.0")
-                        assert snapshot("${get(0).get(1)}/${listOfFiles[2].name}").match("test_output_cluster.dbtype")
-                        assert snapshot("${get(0).get(1)}/${listOfFiles[3].name}").match("test_output_cluster.index")
+                        assert snapshot(
+                            "${get(0).get(1)}/${listOfFiles[0].name}",
+                            "${get(0).get(1)}/${listOfFiles[2].name}",
+                            "${get(0).get(1)}/${listOfFiles[3].name}",
+                            process.out.versions
+                        ).match()
                     }
                 },
-                { assert process.out.versions }
             )
         }
     }
diff --git a/modules/nf-core/mmseqs/linclust/tests/main.nf.test.snap b/modules/nf-core/mmseqs/linclust/tests/main.nf.test.snap
index 9922e0e4984..c3c986470ee 100644
--- a/modules/nf-core/mmseqs/linclust/tests/main.nf.test.snap
+++ b/modules/nf-core/mmseqs/linclust/tests/main.nf.test.snap
@@ -1,20 +1,17 @@
 {
-    "test_output_cluster.index": {
+    "Should cluster an mmseqs database": {
         "content": [
-            "test_output_cluster.index:md5,38908275cdd5727ae0eb9be017f9ca13"
+            "test_output_cluster.0:md5,fe0181e97deccd7c807e9c14f81ebdc0",
+            "test_output_cluster.dbtype:md5,5c879eb8a8613fd4537b919e7d68d089",
+            "test_output_cluster.index:md5,38908275cdd5727ae0eb9be017f9ca13",
+            [
+                "versions.yml:md5,65ce4e8b36259f881d11b0d8caaee69a"
+            ]
         ],
-        "timestamp": "2023-11-21T15:28:32.839871644"
-    },
-    "test_output_cluster.0": {
-        "content": [
-            "test_output_cluster.0:md5,fe0181e97deccd7c807e9c14f81ebdc0"
-        ],
-        "timestamp": "2023-11-21T15:28:32.805287285"
-    },
-    "test_output_cluster.dbtype": {
-        "content": [
-            "test_output_cluster.dbtype:md5,5c879eb8a8613fd4537b919e7d68d089"
-        ],
-        "timestamp": "2023-11-21T15:28:32.829174852"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-09T10:43:54.574245"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/rgi/main/tests/main.nf.test b/modules/nf-core/rgi/main/tests/main.nf.test
index fce16564539..1fca563a969 100644
--- a/modules/nf-core/rgi/main/tests/main.nf.test
+++ b/modules/nf-core/rgi/main/tests/main.nf.test
@@ -16,11 +16,11 @@ nextflow_process {
             script "modules/nf-core/untar/main.nf"
             process {
             """
-            file('https://card.mcmaster.ca/latest/data', checkIfExists: true).copyTo('data.tar.gz')
+            file('https://card.mcmaster.ca/latest/data', checkIfExists: true).copyTo('card-data.tar.bz2')
 
             input[0] = [
                 [ ],
-                file("data.tar.gz")
+                file("card-data.tar.bz2")
             ]
             """
             }
@@ -42,9 +42,9 @@ nextflow_process {
         when {
             process {
                 """
-                input[0] = [                                                                                                                                                                   
-                    [ id:'test', single_end:false ], // meta map                                                                                                                            
-                    file(params.test_data['haemophilus_influenzae']['genome']['genome_fna_gz'], checkIfExists: true)                                                                        
+                input[0] = [
+                    [ id:'test', single_end:false ], // meta map
+                    file(params.test_data['haemophilus_influenzae']['genome']['genome_fna_gz'], checkIfExists: true)
                 ]
                 input[1] = RGI_CARDANNOTATION.out.db
                 input[2] = []
@@ -74,9 +74,9 @@ nextflow_process {
         when {
             process {
                 """
-                input[0] = [                                                                                                                                                                   
-                    [ id:'test', single_end:false ], // meta map                                                                                                                            
-                    file(params.test_data['haemophilus_influenzae']['genome']['genome_fna_gz'], checkIfExists: true)                                                                        
+                input[0] = [
+                    [ id:'test', single_end:false ], // meta map
+                    file(params.test_data['haemophilus_influenzae']['genome']['genome_fna_gz'], checkIfExists: true)
                 ]
                 input[1] = RGI_CARDANNOTATION.out.db
                 input[2] = []
diff --git a/modules/nf-core/rtgtools/rocplot/meta.yml b/modules/nf-core/rtgtools/rocplot/meta.yml
index 927cff90c35..2b4d43d7c91 100644
--- a/modules/nf-core/rtgtools/rocplot/meta.yml
+++ b/modules/nf-core/rtgtools/rocplot/meta.yml
@@ -11,7 +11,7 @@ tools:
       homepage: "https://www.realtimegenomics.com/products/rtg-tools"
       documentation: "https://github.com/RealTimeGenomics/rtg-tools"
       tool_dev_url: "https://github.com/RealTimeGenomics/rtg-tools"
-      licence: "['BSD']"
+      licence: ["BSD"]
 input:
   - meta:
       type: map
diff --git a/modules/nf-core/rtgtools/rocplot/tests/main.nf.test b/modules/nf-core/rtgtools/rocplot/tests/main.nf.test
index 160eafcf901..0a79a385b94 100644
--- a/modules/nf-core/rtgtools/rocplot/tests/main.nf.test
+++ b/modules/nf-core/rtgtools/rocplot/tests/main.nf.test
@@ -7,6 +7,8 @@ nextflow_process {
     tag "modules_nfcore"
     tag "rtgtools"
     tag "rtgtools/rocplot"
+    tag "rtgtools/vcfeval"
+    tag "untar"
 
     test("homo_sapiens - tsv") {
 
diff --git a/modules/nf-core/rtgtools/rocplot/tests/main.nf.test.snap b/modules/nf-core/rtgtools/rocplot/tests/main.nf.test.snap
index 389ffb5bb15..f4dee3a1b96 100644
--- a/modules/nf-core/rtgtools/rocplot/tests/main.nf.test.snap
+++ b/modules/nf-core/rtgtools/rocplot/tests/main.nf.test.snap
@@ -5,6 +5,10 @@
             "test.svg",
             "versions.yml"
         ],
-        "timestamp": "2023-10-24T12:48:36.35343056"
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.2"
+        },
+        "timestamp": "2024-07-09T10:44:42.642303"
     }
 }
\ No newline at end of file
diff --git a/modules/nf-core/shasum/environment.yml b/modules/nf-core/shasum/environment.yml
index 1041bc3018b..8af2d378374 100644
--- a/modules/nf-core/shasum/environment.yml
+++ b/modules/nf-core/shasum/environment.yml
@@ -4,4 +4,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - conda-forge::coreutils=9.1
+  - conda-forge::coreutils=8.30
diff --git a/modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test.snap b/modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test.snap
index 6989f937e2f..1460532c773 100644
--- a/modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test.snap
+++ b/modules/nf-core/summarizedexperiment/summarizedexperiment/tests/main.nf.test.snap
@@ -12,9 +12,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-02-09T13:57:39.545403663"
+        "timestamp": "2024-07-11T16:41:31.796715"
     },
     "gene_log_single_matrix_stub": {
         "content": [
@@ -29,9 +29,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-02-09T13:58:23.258210775"
+        "timestamp": "2024-07-11T16:42:47.12955"
     },
     "versions_single_matrix": {
         "content": [
@@ -58,9 +58,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-02-09T13:57:52.234643863"
+        "timestamp": "2024-07-11T16:41:54.028064"
     },
     "gene_log_multi_matrix_rowdata": {
         "content": "7c35131fdd46dcdba6c71f7f11d5b2c7",
@@ -78,9 +78,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-03-08T14:46:04.546156"
+        "timestamp": "2024-07-11T16:41:54.080728"
     },
     "versions_multi_matrix_stub": {
         "content": [
@@ -90,9 +90,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-03-08T14:46:21.128541"
+        "timestamp": "2024-07-11T16:42:21.425746"
     },
     "versions_multi_matrix_rowdata_coldata_stub": {
         "content": [
@@ -102,9 +102,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-03-08T14:45:43.440258"
+        "timestamp": "2024-07-11T16:41:31.837174"
     },
     "gene_log_multi_matrix": {
         "content": "7c35131fdd46dcdba6c71f7f11d5b2c7",
@@ -127,9 +127,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-02-09T13:58:07.904228634"
+        "timestamp": "2024-07-11T16:42:21.370562"
     },
     "gene_log_single_matrix": {
         "content": "7c35131fdd46dcdba6c71f7f11d5b2c7",
@@ -147,9 +147,9 @@
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-03-08T14:46:37.670798"
+        "timestamp": "2024-07-11T16:42:47.173221"
     },
     "versions_multi_matrix_rowdata": {
         "content": [
diff --git a/modules/nf-core/untar/environment.yml b/modules/nf-core/untar/environment.yml
index 0c9cbb101d0..4f498244afb 100644
--- a/modules/nf-core/untar/environment.yml
+++ b/modules/nf-core/untar/environment.yml
@@ -1,11 +1,9 @@
 name: untar
-
 channels:
   - conda-forge
   - bioconda
   - defaults
-
 dependencies:
   - conda-forge::grep=3.11
-  - conda-forge::sed=4.7
+  - conda-forge::sed=4.8
   - conda-forge::tar=1.34
diff --git a/modules/nf-core/untar/main.nf b/modules/nf-core/untar/main.nf
index 8a75bb957d1..9bd8f554611 100644
--- a/modules/nf-core/untar/main.nf
+++ b/modules/nf-core/untar/main.nf
@@ -4,8 +4,8 @@ process UNTAR {
 
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
-        'nf-core/ubuntu:20.04' }"
+        'https://depot.galaxyproject.org/singularity/ubuntu:22.04' :
+        'nf-core/ubuntu:22.04' }"
 
     input:
     tuple val(meta), path(archive)
@@ -52,8 +52,29 @@ process UNTAR {
     stub:
     prefix    = task.ext.prefix ?: ( meta.id ? "${meta.id}" : archive.toString().replaceFirst(/\.[^\.]+(.gz)?$/, ""))
     """
-    mkdir $prefix
-    touch ${prefix}/file.txt
+    mkdir ${prefix}
+    ## Dry-run untaring the archive to get the files and place all in prefix
+    if [[ \$(tar -taf ${archive} | grep -o -P "^.*?\\/" | uniq | wc -l) -eq 1 ]]; then
+        for i in `tar -tf ${archive}`;
+        do
+            if [[ \$(echo "\${i}" | grep -E "/\$") == "" ]];
+            then
+                touch \${i}
+            else
+                mkdir -p \${i}
+            fi
+        done
+    else
+        for i in `tar -tf ${archive}`;
+        do
+            if [[ \$(echo "\${i}" | grep -E "/\$") == "" ]];
+            then
+                touch ${prefix}/\${i}
+            else
+                mkdir -p ${prefix}/\${i}
+            fi
+        done
+    fi
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
diff --git a/modules/nf-core/untar/tests/main.nf.test b/modules/nf-core/untar/tests/main.nf.test
index 2a7c97bf81e..c957517aaa6 100644
--- a/modules/nf-core/untar/tests/main.nf.test
+++ b/modules/nf-core/untar/tests/main.nf.test
@@ -6,6 +6,7 @@ nextflow_process {
     tag "modules"
     tag "modules_nfcore"
     tag "untar"
+
     test("test_untar") {
 
         when {
@@ -19,10 +20,9 @@ nextflow_process {
         then {
             assertAll (
                 { assert process.success },
-                { assert snapshot(process.out.untar).match("test_untar") },
+                { assert snapshot(process.out).match() },
             )
         }
-
     }
 
     test("test_untar_onlyfiles") {
@@ -38,10 +38,48 @@ nextflow_process {
         then {
             assertAll (
                 { assert process.success },
-                { assert snapshot(process.out.untar).match("test_untar_onlyfiles") },
+                { assert snapshot(process.out).match() },
             )
         }
+    }
+
+    test("test_untar - stub") {
+
+        options "-stub"
 
+        when {
+            process {
+                """
+                input[0] = [ [], file(params.modules_testdata_base_path + 'genomics/sarscov2/genome/db/kraken2.tar.gz', checkIfExists: true) ]
+                """
+            }
+        }
+
+        then {
+            assertAll (
+                { assert process.success },
+                { assert snapshot(process.out).match() },
+            )
+        }
     }
 
+    test("test_untar_onlyfiles - stub") {
+
+        options "-stub"
+
+        when {
+            process {
+                """
+                input[0] = [ [], file(params.modules_testdata_base_path + 'generic/tar/hello.tar.gz', checkIfExists: true) ]
+                """
+            }
+        }
+
+        then {
+            assertAll (
+                { assert process.success },
+                { assert snapshot(process.out).match() },
+            )
+        }
+    }
 }
diff --git a/modules/nf-core/untar/tests/main.nf.test.snap b/modules/nf-core/untar/tests/main.nf.test.snap
index 64550292f33..ceb91b7925c 100644
--- a/modules/nf-core/untar/tests/main.nf.test.snap
+++ b/modules/nf-core/untar/tests/main.nf.test.snap
@@ -1,42 +1,158 @@
 {
     "test_untar_onlyfiles": {
         "content": [
-            [
-                [
+            {
+                "0": [
                     [
-                        
-                    ],
+                        [
+                            
+                        ],
+                        [
+                            "hello.txt:md5,e59ff97941044f85df5297e1c302d260"
+                        ]
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,6063247258c56fd271d076bb04dd7536"
+                ],
+                "untar": [
+                    [
+                        [
+                            
+                        ],
+                        [
+                            "hello.txt:md5,e59ff97941044f85df5297e1c302d260"
+                        ]
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,6063247258c56fd271d076bb04dd7536"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.3"
+        },
+        "timestamp": "2024-07-10T12:04:28.231047"
+    },
+    "test_untar_onlyfiles - stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        [
+                            
+                        ],
+                        [
+                            "hello.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        ]
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,6063247258c56fd271d076bb04dd7536"
+                ],
+                "untar": [
                     [
-                        "hello.txt:md5,e59ff97941044f85df5297e1c302d260"
+                        [
+                            
+                        ],
+                        [
+                            "hello.txt:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        ]
                     ]
+                ],
+                "versions": [
+                    "versions.yml:md5,6063247258c56fd271d076bb04dd7536"
                 ]
-            ]
+            }
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-02-28T11:49:41.320643"
+        "timestamp": "2024-07-10T12:04:45.773103"
+    },
+    "test_untar - stub": {
+        "content": [
+            {
+                "0": [
+                    [
+                        [
+                            
+                        ],
+                        [
+                            "hash.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            "opts.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            "taxo.k2d:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        ]
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,6063247258c56fd271d076bb04dd7536"
+                ],
+                "untar": [
+                    [
+                        [
+                            
+                        ],
+                        [
+                            "hash.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            "opts.k2d:md5,d41d8cd98f00b204e9800998ecf8427e",
+                            "taxo.k2d:md5,d41d8cd98f00b204e9800998ecf8427e"
+                        ]
+                    ]
+                ],
+                "versions": [
+                    "versions.yml:md5,6063247258c56fd271d076bb04dd7536"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "24.04.3"
+        },
+        "timestamp": "2024-07-10T12:04:36.777441"
     },
     "test_untar": {
         "content": [
-            [
-                [
+            {
+                "0": [
                     [
-                        
-                    ],
+                        [
+                            
+                        ],
+                        [
+                            "hash.k2d:md5,8b8598468f54a7087c203ad0190555d9",
+                            "opts.k2d:md5,a033d00cf6759407010b21700938f543",
+                            "taxo.k2d:md5,094d5891cdccf2f1468088855c214b2c"
+                        ]
+                    ]
+                ],
+                "1": [
+                    "versions.yml:md5,6063247258c56fd271d076bb04dd7536"
+                ],
+                "untar": [
                     [
-                        "hash.k2d:md5,8b8598468f54a7087c203ad0190555d9",
-                        "opts.k2d:md5,a033d00cf6759407010b21700938f543",
-                        "taxo.k2d:md5,094d5891cdccf2f1468088855c214b2c"
+                        [
+                            
+                        ],
+                        [
+                            "hash.k2d:md5,8b8598468f54a7087c203ad0190555d9",
+                            "opts.k2d:md5,a033d00cf6759407010b21700938f543",
+                            "taxo.k2d:md5,094d5891cdccf2f1468088855c214b2c"
+                        ]
                     ]
+                ],
+                "versions": [
+                    "versions.yml:md5,6063247258c56fd271d076bb04dd7536"
                 ]
-            ]
+            }
         ],
         "meta": {
             "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
+            "nextflow": "24.04.3"
         },
-        "timestamp": "2024-02-28T11:49:33.795172"
+        "timestamp": "2024-07-10T12:04:19.377674"
     }
 }
\ No newline at end of file