diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index eb7144b5fd0..f1af760e182 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -624,8 +624,6 @@ jobs: path: modules/nf-core/wittyer - profile: conda path: modules/nf-core/islandpath - - profile: conda - path: modules/nf-core/liftoff - profile: conda path: subworkflows/nf-core/vcf_annotate_ensemblvep - profile: conda diff --git a/modules/nf-core/liftoff/environment.yml b/modules/nf-core/liftoff/environment.yml new file mode 100644 index 00000000000..7f3eadf4c53 --- /dev/null +++ b/modules/nf-core/liftoff/environment.yml @@ -0,0 +1,9 @@ +name: liftoff + +channels: + - conda-forge + - bioconda + - defaults + +dependencies: + - bioconda::liftoff=1.6.3 diff --git a/modules/nf-core/liftoff/main.nf b/modules/nf-core/liftoff/main.nf index a107d50b4cb..4db5da2f462 100644 --- a/modules/nf-core/liftoff/main.nf +++ b/modules/nf-core/liftoff/main.nf @@ -2,6 +2,7 @@ process LIFTOFF { tag "$meta.id" label 'process_high' + conda "${moduleDir}/environment.yml" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/liftoff:1.6.3--pyhdfd78af_0': 'biocontainers/liftoff:1.6.3--pyhdfd78af_0' }" diff --git a/modules/nf-core/liftoff/tests/tags.yml b/modules/nf-core/liftoff/tests/tags.yml deleted file mode 100644 index 4d0adb62c6c..00000000000 --- a/modules/nf-core/liftoff/tests/tags.yml +++ /dev/null @@ -1,2 +0,0 @@ -liftoff: - - "modules/nf-core/liftoff/**"