{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":157735234,"defaultBranch":"master","name":"nascent","ownerLogin":"nf-core","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-11-15T15:46:09.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/35520196?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1727196497.0","currentOid":""},"activityList":{"items":[{"before":"e8a0e4633c60674784fc8afc28efff0081581705","after":"75040bc3d6bf82f5114e9356adfdc77dc5826ff9","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-28T17:10:00.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"fix(pints): Bump up memory\n\nLooks like it's using quite a bit of memory, wondering if the lack of\nCPU usage is because of the memory bottleneck.\n\nAlso might use a scratch directive, because it's reading 200G of data,\nand writing 30-40g over the course of it apparently.","shortMessageHtmlLink":"fix(pints): Bump up memory"}},{"before":"fd30ade5018841af7dbb95c66c0ba305b6336175","after":"e8a0e4633c60674784fc8afc28efff0081581705","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-27T19:13:13.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"feat(grohmm): Add Native MultiQC support","shortMessageHtmlLink":"feat(grohmm): Add Native MultiQC support"}},{"before":"f02892c4552c1817caa2fd9198dec1b0de02c68e","after":"fd30ade5018841af7dbb95c66c0ba305b6336175","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-26T19:57:03.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"refactor(grohmm): Use each input\n\nDidn't know that was a thing!","shortMessageHtmlLink":"refactor(grohmm): Use each input"}},{"before":"7a93f89dfcd53108de58d15ca66822ecb14ed3a0","after":"f02892c4552c1817caa2fd9198dec1b0de02c68e","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-26T19:43:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"refactor(grohmm): Use each input\n\nDidn't know that was a thing!","shortMessageHtmlLink":"refactor(grohmm): Use each input"}},{"before":"a47a0ef6d37ee2dde5b0d1290461eb8709ad5847","after":"7a93f89dfcd53108de58d15ca66822ecb14ed3a0","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-26T19:41:42.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test(grohmm): Update all the snapshots","shortMessageHtmlLink":"test(grohmm): Update all the snapshots"}},{"before":"af193904b813c320f1e8b98dcf31a2e8bb56ed62","after":"a47a0ef6d37ee2dde5b0d1290461eb8709ad5847","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-25T21:33:47.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test(grohmm): Update all the snapshots","shortMessageHtmlLink":"test(grohmm): Update all the snapshots"}},{"before":"e96bc6a08923dab5ac3f705c6f6df8594a148343","after":"af193904b813c320f1e8b98dcf31a2e8bb56ed62","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-25T21:31:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test(grohmm): Update all the snapshots","shortMessageHtmlLink":"test(grohmm): Update all the snapshots"}},{"before":"986f5b94953d9985a03ada56f9708b93a64cbd80","after":"e96bc6a08923dab5ac3f705c6f6df8594a148343","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-25T21:28:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"fix(grohmm): Update groHMM with fix\n\nNow it handles when there are no broken transcripts(ie with a test dataset)","shortMessageHtmlLink":"fix(grohmm): Update groHMM with fix"}},{"before":"3b50af3050e2c43d453fa96a7e0c940e6297eab2","after":"986f5b94953d9985a03ada56f9708b93a64cbd80","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-25T18:39:36.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"fix(grohmm): Clean up tuning file to match","shortMessageHtmlLink":"fix(grohmm): Clean up tuning file to match"}},{"before":"8288656b0e7fc0dd9f815d3cebeb607e6e1f08af","after":"3b50af3050e2c43d453fa96a7e0c940e6297eab2","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-24T17:26:24.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"refactor(grohmm): Get jobs running for every set of possibilities","shortMessageHtmlLink":"refactor(grohmm): Get jobs running for every set of possibilities"}},{"before":"e71e6c507843215d7a94e6b61cabf749ea14d9cc","after":"46c516cd7b0dbc1023a3f6844ba05a3c412c7c6b","ref":"refs/heads/bwamemory","pushedAt":"2024-09-24T16:48:28.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"style: Clean up groovy formatting","shortMessageHtmlLink":"style: Clean up groovy formatting"}},{"before":null,"after":"8288656b0e7fc0dd9f815d3cebeb607e6e1f08af","ref":"refs/heads/grohmm-overhaul","pushedAt":"2024-09-24T16:48:17.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"fix(grohmm): Remove keytype\n\nIt's in the vignette but the actual function call and docs don't have a\nuse for it. It just defaults to gene_id.\nhttps://github.com/bioinformaticsorphanage/groHMM/blob/86486c388d12a636041c1fc40d1308f96abb5161/R/makeConsensusAnnotations.R#L47-L53","shortMessageHtmlLink":"fix(grohmm): Remove keytype"}},{"before":"97bc18ccf7e772404a70f8d70231ba6cff2f5d72","after":"e71e6c507843215d7a94e6b61cabf749ea14d9cc","ref":"refs/heads/bwamemory","pushedAt":"2024-09-24T16:45:04.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"fix(grohmm): Remove keytype\n\nIt's in the vignette but the actual function call and docs don't have a\nuse for it. It just defaults to gene_id.\nhttps://github.com/bioinformaticsorphanage/groHMM/blob/86486c388d12a636041c1fc40d1308f96abb5161/R/makeConsensusAnnotations.R#L47-L53","shortMessageHtmlLink":"fix(grohmm): Remove keytype"}},{"before":"a6bedd9d0c55574306c0c3a88e2920a5c303233b","after":"97bc18ccf7e772404a70f8d70231ba6cff2f5d72","ref":"refs/heads/bwamemory","pushedAt":"2024-09-23T22:02:10.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test(grohmm): Use kgChr7 gtf","shortMessageHtmlLink":"test(grohmm): Use kgChr7 gtf"}},{"before":"8d2444b1005752fc8af481a5caa3c4e3773662a9","after":"a6bedd9d0c55574306c0c3a88e2920a5c303233b","ref":"refs/heads/bwamemory","pushedAt":"2024-09-23T02:20:13.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test: Setup tests for grohmm","shortMessageHtmlLink":"test: Setup tests for grohmm"}},{"before":"e52fa91e39a994c0ebbf907d79e2776bb7c020e7","after":"8d2444b1005752fc8af481a5caa3c4e3773662a9","ref":"refs/heads/bwamemory","pushedAt":"2024-09-18T23:33:59.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"chore: Add working","shortMessageHtmlLink":"chore: Add working"}},{"before":"3708d867c0801ab90a9192d0496c23e7236bb9b4","after":"e52fa91e39a994c0ebbf907d79e2776bb7c020e7","ref":"refs/heads/bwamemory","pushedAt":"2024-09-16T02:03:56.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"refactor: Setup transcript calling","shortMessageHtmlLink":"refactor: Setup transcript calling"}},{"before":"94014007e7f7d4fc4aa30e5787058a2d77eea1fc","after":"3708d867c0801ab90a9192d0496c23e7236bb9b4","ref":"refs/heads/bwamemory","pushedAt":"2024-09-14T20:59:21.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"feat: Add grohmm min and max tuning params","shortMessageHtmlLink":"feat: Add grohmm min and max tuning params"}},{"before":"5b222ffef478ef503931dee3fe4df59bb46eb92d","after":"fd747f19c47591f696e319a9aac354805f8114e0","ref":"refs/heads/dev","pushedAt":"2024-09-13T14:16:03.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"Merge pull request #163\n\nstyle: Make version snapshots pretty","shortMessageHtmlLink":"Merge pull request #163"}},{"before":"606db764156131d22c28120cc6805801faf24ebb","after":"3b082852a6bb0f5d7fe26199c1ee7e01d77a5c62","ref":"refs/heads/clean-version-snapshots","pushedAt":"2024-09-13T13:43:47.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test: Give up on flaky test","shortMessageHtmlLink":"test: Give up on flaky test"}},{"before":"f40087b9c085af441fcc7a7b75eb9863011a88c7","after":"606db764156131d22c28120cc6805801faf24ebb","ref":"refs/heads/clean-version-snapshots","pushedAt":"2024-09-13T11:51:55.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test: Give up on flaky test","shortMessageHtmlLink":"test: Give up on flaky test"}},{"before":"2ed7486cf0e4536e4e4030b7a941c0577a8d93bc","after":"f40087b9c085af441fcc7a7b75eb9863011a88c7","ref":"refs/heads/clean-version-snapshots","pushedAt":"2024-09-13T11:26:56.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test: Give up on flaky test","shortMessageHtmlLink":"test: Give up on flaky test"}},{"before":"dea83aea3dbcf06ebf75d6d45ccd0df6091837e5","after":"2ed7486cf0e4536e4e4030b7a941c0577a8d93bc","ref":"refs/heads/clean-version-snapshots","pushedAt":"2024-09-12T21:38:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test: Give up on flaky test","shortMessageHtmlLink":"test: Give up on flaky test"}},{"before":null,"after":"dea83aea3dbcf06ebf75d6d45ccd0df6091837e5","ref":"refs/heads/clean-version-snapshots","pushedAt":"2024-09-12T19:30:15.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"style: Make version snapshots pretty","shortMessageHtmlLink":"style: Make version snapshots pretty"}},{"before":"c858c5c5ad2414fa28aeac2c02f23412b15efed0","after":"94014007e7f7d4fc4aa30e5787058a2d77eea1fc","ref":"refs/heads/bwamemory","pushedAt":"2024-09-12T17:37:39.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"fix(grohmm): Link up tuning files and samples","shortMessageHtmlLink":"fix(grohmm): Link up tuning files and samples"}},{"before":"6e84eb2468e022ec140ca90e44fdcbf366462f91","after":"c858c5c5ad2414fa28aeac2c02f23412b15efed0","ref":"refs/heads/bwamemory","pushedAt":"2024-09-11T22:50:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"fix(grohmm): bam => bams","shortMessageHtmlLink":"fix(grohmm): bam => bams"}},{"before":null,"after":"6e84eb2468e022ec140ca90e44fdcbf366462f91","ref":"refs/heads/bwamemory","pushedAt":"2024-09-11T22:30:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"style: Clean up groovy formatting","shortMessageHtmlLink":"style: Clean up groovy formatting"}},{"before":"531378a5932809196f4a4bd4b831c0ece9325748","after":null,"ref":"refs/heads/gffread_bug","pushedAt":"2024-09-11T17:19:23.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"}},{"before":"b35668bab06caad16bb9535abb4f813ac3c8566f","after":"5b222ffef478ef503931dee3fe4df59bb46eb92d","ref":"refs/heads/dev","pushedAt":"2024-09-11T16:22:17.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"Merge pull request #162\n\nFix GFFREAD bug","shortMessageHtmlLink":"Merge pull request #162"}},{"before":"49f9b85f77383a7744aa0858f2fd6bd1f1065c83","after":"531378a5932809196f4a4bd4b831c0ece9325748","ref":"refs/heads/gffread_bug","pushedAt":"2024-09-11T16:21:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"edmundmiller","name":"Edmund Miller","path":"/edmundmiller","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20095261?s=80&v=4"},"commit":{"message":"test: Add a note about a flaky test","shortMessageHtmlLink":"test: Add a note about a flaky test"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0yOFQxNzoxMDowMC4wMDAwMDBazwAAAATDdbt7","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0xMVQxNjoyMTo1OS4wMDAwMDBazwAAAASzbgwx"}},"title":"Activity ยท nf-core/nascent"}