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modules.json
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modules.json
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{
"name": "nf-core/nascent",
"homePage": "https://github.com/nf-core/nascent",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bbmap/pileup": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"]
},
"bedtools/genomecov": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"]
},
"bedtools/intersect": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"]
},
"bedtools/merge": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"]
},
"bedtools/sort": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "3c77ca9aac783e76c3614a06db3bfe4fef619bde",
"installed_by": ["fastq_align_bowtie2", "modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "1fea64f5132a813ec97c1c6d3a74e0aee7142b6d",
"installed_by": ["modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "1e2b7fb7106852388610c0360d234b0829eb980e",
"installed_by": ["fastq_align_bwa", "modules"]
},
"bwamem2/index": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"bwamem2/mem": {
"branch": "master",
"git_sha": "1e2b7fb7106852388610c0360d234b0829eb980e",
"installed_by": ["modules"]
},
"cat/cat": {
"branch": "master",
"git_sha": "81f27e75847087865299cc46605deb3b09b4e0a2",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "02fd5bd7275abad27aad32d5c852e0a9b1b98882",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "de45447d060b8c8b98575bc637a4a575fd0638e1",
"installed_by": ["modules"]
},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "1b0ffa4e5aed5b7e3cd4311af31bd3b2c8345051",
"installed_by": ["modules"]
},
"deeptools/bamcoverage": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"dragmap/align": {
"branch": "master",
"git_sha": "3c77ca9aac783e76c3614a06db3bfe4fef619bde",
"installed_by": ["modules"],
"patch": "modules/nf-core/dragmap/align/dragmap-align.diff"
},
"dragmap/hashtable": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "003920c7f9a8ae19b69a97171922880220bedf56",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "f4ae1d942bd50c5c0b9bd2de1393ce38315ba57c",
"installed_by": ["modules"]
},
"gffread": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "3a5fef109d113b4997c9822198664ca5f2716208",
"installed_by": ["modules"]
},
"homer/findpeaks": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["homer/groseq"]
},
"homer/maketagdirectory": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["homer/groseq"]
},
"homer/makeucscfile": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["homer/groseq"]
},
"homer/pos2bed": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["homer/groseq"]
},
"multiqc": {
"branch": "master",
"git_sha": "ccacf6f5de6df3bc6d73b665c1fd2933d8bbc290",
"installed_by": ["modules"]
},
"pints/caller": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"],
"patch": "modules/nf-core/pints/caller/pints-caller.diff"
},
"preseq/ccurve": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["modules"]
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "9a88058962c0ee1715f2ad0e017c37e0cd75e532",
"installed_by": ["modules"]
},
"rseqc/inferexperiment": {
"branch": "master",
"git_sha": "41f4baa439663b9027727d83a3293db93bad3f8c",
"installed_by": ["modules"]
},
"rseqc/readdistribution": {
"branch": "master",
"git_sha": "d5f5ce9474983fe0973b26c39728b5c57b13c8d4",
"installed_by": ["modules"]
},
"rseqc/readduplication": {
"branch": "master",
"git_sha": "41f4baa439663b9027727d83a3293db93bad3f8c",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_dedup_stats_samtools_umitools", "bam_sort_stats_samtools"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_stats_samtools"]
},
"subread/featurecounts": {
"branch": "master",
"git_sha": "f6bba1a67cdbb605f24d7a4e8dd383b0eec45b52",
"installed_by": ["modules"]
},
"umitools/dedup": {
"branch": "master",
"git_sha": "ff7e93715a2acecf3f143ec78c9858deba2984d0",
"installed_by": ["bam_dedup_stats_samtools_umitools"]
},
"untar": {
"branch": "master",
"git_sha": "e719354ba77df0a1bd310836aa2039b45c29d620",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_dedup_stats_samtools_umitools": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["subworkflows"]
},
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["fastq_align_bowtie2", "fastq_align_bwa", "subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
"installed_by": ["bam_dedup_stats_samtools_umitools", "bam_sort_stats_samtools", "subworkflows"]
},
"fastq_align_bowtie2": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["subworkflows"]
},
"fastq_align_bwa": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["subworkflows"]
},
"homer/groseq": {
"branch": "master",
"git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
"installed_by": ["subworkflows"]
}
}
}
}
}
}