diff --git a/modules.json b/modules.json
index 41c03f3e..11019be3 100644
--- a/modules.json
+++ b/modules.json
@@ -107,8 +107,7 @@
                     },
                     "pints/caller": {
                         "branch": "master",
-                        "git_sha": "ad1e966b5123a2af6be786f35628c40f64771097",
-                        "patch": "modules/nf-core/pints/caller/pints-caller.diff"
+                        "git_sha": "a8c6d338a76df3736215c93c27d9ccc7b88e9cf4"
                     },
                     "preseq/ccurve": {
                         "branch": "master",
diff --git a/modules/nf-core/pints/caller/main.nf b/modules/nf-core/pints/caller/main.nf
index c06c5dad..ddbbd8ae 100644
--- a/modules/nf-core/pints/caller/main.nf
+++ b/modules/nf-core/pints/caller/main.nf
@@ -15,7 +15,7 @@ process PINTS_CALLER {
     tuple val(meta), path("*_bidirectional_peaks.bed") , optional:true, emit: bidirectional_TREs
     tuple val(meta), path("*_unidirectional_peaks.bed"), optional:true, emit: unidirectional_TREs
     tuple val(meta), path("peakcalling_*.log")                        , emit: peakcalling_log
-    path  "versions.yml"     , emit: versions
+    path  "versions.yml"                                              , emit: versions
 
     when:
     task.ext.when == null || task.ext.when
diff --git a/modules/nf-core/pints/caller/meta.yml b/modules/nf-core/pints/caller/meta.yml
index 647e5b89..fd649816 100644
--- a/modules/nf-core/pints/caller/meta.yml
+++ b/modules/nf-core/pints/caller/meta.yml
@@ -46,14 +46,21 @@ output:
       type: file
       description: Divergent TREs
       pattern: "*_divergent_peaks.bed"
+      optional: true
   - bidirectional_TREs:
       type: file
       description: Divergent TREs and convergent TREs
       pattern: "*_bidirectional_peaks.bed"
+      optional: true
   - unidirectional_TREs:
       type: file
       description: Unidirectional TREs, maybe lncRNAs transcribed from enhancers (e-lncRNAs)
       pattern: "*_unidirectional_peaks.bed"
+      optional: true
+  - peakcalling_log:
+      type: file
+      description: Peakcalling log for debugging purposes
+      pattern: "peakcalling_*.log"
 
 authors:
   - "@Emiller88"
diff --git a/modules/nf-core/pints/caller/pints-caller.diff b/modules/nf-core/pints/caller/pints-caller.diff
deleted file mode 100644
index eba13264..00000000
--- a/modules/nf-core/pints/caller/pints-caller.diff
+++ /dev/null
@@ -1,19 +0,0 @@
-Changes in module 'nf-core/pints/caller'
---- modules/nf-core/pints/caller/main.nf
-+++ modules/nf-core/pints/caller/main.nf
-@@ -11,9 +11,10 @@
-     tuple val(meta), path(bams)
- 
-     output:
--    tuple val(meta), path("*_divergent_peaks.bed")     , emit: divergent_TREs
--    tuple val(meta), path("*_bidirectional_peaks.bed") , emit: bidirectional_TREs
--    tuple val(meta), path("*_unidirectional_peaks.bed"), emit: unidirectional_TREs
-+    tuple val(meta), path("*_divergent_peaks.bed")     , optional:true, emit: divergent_TREs
-+    tuple val(meta), path("*_bidirectional_peaks.bed") , optional:true, emit: bidirectional_TREs
-+    tuple val(meta), path("*_unidirectional_peaks.bed"), optional:true, emit: unidirectional_TREs
-+    tuple val(meta), path("peakcalling_*.log")                        , emit: peakcalling_log
-     path  "versions.yml"     , emit: versions
- 
-     when:
-
-************************************************************