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Releases: nf-core/nascent

Usul

05 Mar 17:18
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Added

Changed

  • #117 - Use fromSamplesheet
  • Updating naming scheme to use things from the Dune universe

Tin Snake

17 Feb 15:45
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Fixed

  • [#109] - Fixed bug where using AWS igenomes or passing a pre-made index fails because of an update to the module expects them to have a metamap. Generation was still working. (@MathewBerg9)

Full Changelog: 2.1.0...2.1.1

Aluminium Squirrel

15 Feb 15:42
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Added

  • [#94] - Added a second BEDTools intersect step to allow filtering and overlapping in the same workflow. (@emiller88)
  • [#101] - Initialized nf-test (@emiller88 )

Changed

  • [#103] - Updated Modules

Fixed

Titanium Oyster

24 Oct 14:49
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Added

  • DSL2 conversion
  • [#28] - Added DRAGMAP alignment
  • [#64] - Added CHM13 igenomes config
  • [#39] - Add PINTS for TSS identification
  • [#71] - Add FASTP for adapter trimming
  • [#77] - Add dedup subworkflow

Fixed

  • [#33] - groHMM works on full runs. Added the keep standard chromosomes function to standardize bam files.

Dependencies

  • Updated Nextflow version to v21.10.6

nf-core/nascent version 1.0

16 Apr 08:36
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Initial release of the nf-core/nascent transcription processing pipeline made by @ignaciot @magruca !

This pipeline is designed to process the sequencing output of nascent transcription assays, like GRO-seq or PRO-seq. It produces bedGraph- and bigWig-formatted outputs after mapping strand-specific reads, as well as other useful outputs like quality control reports or IGV-ready (Integrative Genomics Viewer) TDF files.