From 4f26c00cde9954d53541d02dde9bd2a87ffb822b Mon Sep 17 00:00:00 2001 From: Ramprasad Neethiraj <20065894+ramprasadn@users.noreply.github.com> Date: Fri, 4 Oct 2024 10:02:04 +0200 Subject: [PATCH] fix --- CHANGELOG.md | 1 + subworkflows/local/annotation/annotate_cadd.nf | 3 +-- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9c178514..7b000682 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -18,6 +18,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Fixed` +- bcftools annotate declaration in annotate CADD subworkflow [#624](https://github.com/nf-core/raredisease/pull/624) - Rhocallviz subworkflow will only be invocated once per sample [#621](https://github.com/nf-core/raredisease/pull/621) - Allow for VEP version 112 to be used and set it to default [#617](https://github.com/nf-core/raredisease/pull/617) diff --git a/subworkflows/local/annotation/annotate_cadd.nf b/subworkflows/local/annotation/annotate_cadd.nf index 12c596a7..1b582122 100644 --- a/subworkflows/local/annotation/annotate_cadd.nf +++ b/subworkflows/local/annotation/annotate_cadd.nf @@ -30,10 +30,9 @@ workflow ANNOTATE_CADD { ch_vcf .join(CADD.out.tsv) .join(TABIX_CADD.out.tbi) - .combine(ch_header) .set { ch_annotate_in } - BCFTOOLS_ANNOTATE(ch_annotate_in) + BCFTOOLS_ANNOTATE(ch_annotate_in, ch_header) TABIX_ANNOTATE (BCFTOOLS_ANNOTATE.out.vcf)