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We create a BAM index file during the RSeQC step, but don't save it to results. It would probably be better to move this index generation step to an earlier process (or a new process) and save it to results.
From @ewels on June 23, 2017 9:4
We create a BAM index file during the RSeQC step, but don't save it to results. It would probably be better to move this index generation step to an earlier process (or a new process) and save it to results.
Copied from original issue: SciLifeLab#134
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