add a tabix tabix test

nf-core · Sep 5, 2024 · b6e19d8 · b6e19d8
1 parent 05c238e
commit b6e19d8
Showing 1 changed file with 9 additions and 0 deletions.
diff --git a/tests/modules/test_lint.py b/tests/modules/test_lint.py
@@ -186,6 +186,15 @@ def test_modules_lint_trimgalore(self):
         assert len(module_lint.passed) > 0
         assert len(module_lint.warned) >= 0
 
+    def test_modules_lint_tabix_tabix(self):
+        """Test linting the tabix/tabix module"""
+        self.mods_install.install("tabix/tabix")
+        module_lint = nf_core.modules.lint.ModuleLint(directory=self.pipeline_dir)
+        module_lint.lint(print_results=False, module="tabix/tabix")
+        assert len(module_lint.failed) == 0, f"Linting failed with {[x.__dict__ for x in module_lint.failed]}"
+        assert len(module_lint.passed) > 0
+        assert len(module_lint.warned) >= 0
+
     def test_modules_lint_empty(self):
         """Test linting a pipeline with no modules installed"""
         self.mods_remove.remove("fastqc", force=True)