Skip to content

Issues: nf-core/tools

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

251 Open 794 Closed
251 Open 794 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Add and lint module Renovate comments modules Related to tools for working with DSL2 modules
#3184 opened Sep 27, 2024 by ewels
4 tasks
Remove for loops from the pipeline template
#3183 opened Sep 27, 2024 by bentsherman 3.0
v3.0 release: Write a blog post enhancement
#3181 opened Sep 26, 2024 by ewels 3.0
@mashehu
Download: Fix support for Seqera Community Containers bug Something isn't working high-priority
#3179 opened Sep 24, 2024 by MatthiasZepper
5
Add ability to install a subworkflow composed nf-core and non-nfcore modules/subworkflows. enhancement high-priority
#3175 opened Sep 17, 2024 by kenibrewer 3.1
@jvfe
2
Add ability to install a nf-core module into a private module library enhancement high-priority
#3174 opened Sep 17, 2024 by kenibrewer 3.1
5
Comment in 'nf-core create-params-file --show-hidden' indicates hidden parameters are missing. Params are there bug Something isn't working
#3172 opened Sep 16, 2024 by FriederikeHanssen
Remove import statements from pipeline template high-priority template nf-core pipeline/component template
#3165 opened Sep 11, 2024 by ewels 3.0
1
Singularity container symlinks not consistently created bug Something isn't working download nf-core download
#3162 opened Sep 7, 2024 by muffato
1
@muffato
error_retry label not recognized as standard label for certain module structures bug Something isn't working good-first-issue linting
#3160 opened Sep 6, 2024 by Felix-Kummer
2
nf-core pipelines bump-version command should update pipeline version in nf-test snapshots enhancement
#3158 opened Sep 4, 2024 by maxulysse
modules update with patch deletes files in templates bug Something isn't working
#3157 opened Sep 3, 2024 by FriederikeHanssen
1
Schema: Support multi-line text inputs schema
#3145 opened Aug 28, 2024 by ewels
1
Pass a list of modules/subworkflows(files) to nf-core modules lint enhancement
#3140 opened Aug 26, 2024 by edmundmiller
Add a linting test for the metro map enhancement
#3135 opened Aug 23, 2024 by maxulysse
Remove try-catch blocks around institutional configs high-priority template nf-core pipeline/component template
#3132 opened Aug 21, 2024 by bentsherman 3.0
14
Move igenomes config into pipeline code high-priority
#3131 opened Aug 21, 2024 by bentsherman 3.0
3
Add -w, --fail-warned option to nf-core schema lint enhancement
#3123 opened Aug 16, 2024 by theJasonFan
Lint for test data paths and produce a warning/error if the config map is used? enhancement
#3114 opened Aug 13, 2024 by GallVp
@GallVp
MultiQC results not cacheable bug Something isn't working
#3110 opened Aug 12, 2024 by apeltzer
nf-core sync does not respect existing template config on dev branch
#3109 opened Aug 8, 2024 by awgymer
modules linting: Check that version.yml has version of all items in environment.yml linting modules Related to tools for working with DSL2 modules
#3107 opened Aug 8, 2024 by mashehu
Print test directory path in output from nf-core test enhancement
#3106 opened Aug 7, 2024 by erikrikarddaniel
Test pipelines with Singularity & Conda enhancement infrastructure pipeline-testing template nf-core pipeline/component template
#3098 opened Aug 5, 2024 by mirpedrol
1
Manual include or exclude specific files in template
#3088 opened Jul 30, 2024 by adamrtalbot
ProTip! Updated in the last three days: updated:>2024-09-26.