From 49c6bed924d5543276f2392ab616394a1517732f Mon Sep 17 00:00:00 2001 From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com> Date: Thu, 29 Feb 2024 19:44:50 -0600 Subject: [PATCH 1/2] chore: Update ci to use nf-core/setup-nextflow v2 --- .github/actions/create-lint-wf/action.yml | 2 +- .github/workflows/create-test-lint-wf-template.yml | 2 +- .github/workflows/create-test-wf.yml | 2 +- .github/workflows/pytest.yml | 2 +- .github/workflows/rich-codex.yml | 2 +- .github/workflows/sync.yml | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/.github/actions/create-lint-wf/action.yml b/.github/actions/create-lint-wf/action.yml index 51bf2ae5f7..1741b934f2 100644 --- a/.github/actions/create-lint-wf/action.yml +++ b/.github/actions/create-lint-wf/action.yml @@ -17,7 +17,7 @@ runs: # Set up Nextflow - name: Install Nextflow - uses: nf-core/setup-nextflow@v1 + uses: nf-core/setup-nextflow@v2 with: version: ${{ matrix.NXF_VER }} diff --git a/.github/workflows/create-test-lint-wf-template.yml b/.github/workflows/create-test-lint-wf-template.yml index 188cccfd75..5f5d545199 100644 --- a/.github/workflows/create-test-lint-wf-template.yml +++ b/.github/workflows/create-test-lint-wf-template.yml @@ -72,7 +72,7 @@ jobs: pip install . - name: Install Nextflow - uses: nf-core/setup-nextflow@v1 + uses: nf-core/setup-nextflow@v2 with: version: latest-everything diff --git a/.github/workflows/create-test-wf.yml b/.github/workflows/create-test-wf.yml index cd36d4e62d..d68bfae71c 100644 --- a/.github/workflows/create-test-wf.yml +++ b/.github/workflows/create-test-wf.yml @@ -59,7 +59,7 @@ jobs: pip install . - name: Install Nextflow - uses: nf-core/setup-nextflow@v1 + uses: nf-core/setup-nextflow@v2 with: version: ${{ matrix.NXF_VER }} diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index eec676a746..7481d0a155 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -119,7 +119,7 @@ jobs: run: echo "date=$(date +'%Y-%m')" >> $GITHUB_ENV - name: Install Nextflow - uses: nf-core/setup-nextflow@v1 + uses: nf-core/setup-nextflow@v2 - name: Look if nf-test is already installed and write to env variable id: check-nftest diff --git a/.github/workflows/rich-codex.yml b/.github/workflows/rich-codex.yml index 8748f3d7b3..3cef06c7c3 100644 --- a/.github/workflows/rich-codex.yml +++ b/.github/workflows/rich-codex.yml @@ -15,7 +15,7 @@ jobs: cache-dependency-path: setup.py - name: Install Nextflow - uses: nf-core/setup-nextflow@v1 + uses: nf-core/setup-nextflow@v2 - name: Cache nf-test installation id: cache-software diff --git a/.github/workflows/sync.yml b/.github/workflows/sync.yml index c998552ddd..19e895f452 100644 --- a/.github/workflows/sync.yml +++ b/.github/workflows/sync.yml @@ -67,7 +67,7 @@ jobs: pip install . - name: Install Nextflow - uses: nf-core/setup-nextflow@v1 + uses: nf-core/setup-nextflow@v2 with: version: "latest-everything" From ae4725156c7694f248cdf51a0cad41cf7c5e312c Mon Sep 17 00:00:00 2001 From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com> Date: Thu, 29 Feb 2024 19:45:43 -0600 Subject: [PATCH 2/2] chore: Update CHANGELOG --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index 6d59140f95..9d2be810fd 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,6 +10,8 @@ ### General +- Update ci to use nf-core/setup-nextflow v2 + ## [v2.13.1 - Tin Puppy Patch](https://github.com/nf-core/tools/releases/tag/2.13) - [2024-02-29] ### Template