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Template: Update modules and and local subworkflow syntax #3166

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1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -38,6 +38,7 @@
- add option to exclude tower.yml from pipeline template ([#3134](https://github.com/nf-core/tools/pull/3134))
- run nf-core lint `--release` on PRs to master ([#3148](https://github.com/nf-core/tools/pull/3148))
- Add tests to ensure all files are part of a template customisation group and all groups are tested ([#3099](https://github.com/nf-core/tools/pull/3099))
- Update the syntax of `utils_nfcore_pipeline_pipeline` local subworkflow ([#3166](https://github.com/nf-core/tools/pull/3166))
- Replaces the old custom `check_max()` function with the Nextflow native `resourceLimits` directive ([#3037](https://github.com/nf-core/tools/pull/3037))
- Fixed release announcement hashtags for Mastodon ([#3099](https://github.com/nf-core/tools/pull/3176))

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4 changes: 2 additions & 2 deletions nf_core/pipeline-template/modules.json
Original file line number Diff line number Diff line change
Expand Up @@ -8,12 +8,12 @@
{%- if fastqc %}
"fastqc": {
"branch": "master",
"git_sha": "285a50500f9e02578d90b3ce6382ea3c30216acd",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": ["modules"]
}{% endif %}{%- if multiqc %}{% if fastqc %},{% endif %}
"multiqc": {
"branch": "master",
"git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"installed_by": ["modules"]
}
{%- endif %}
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5 changes: 4 additions & 1 deletion nf_core/pipeline-template/modules/nf-core/fastqc/main.nf

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225 changes: 161 additions & 64 deletions nf_core/pipeline-template/modules/nf-core/fastqc/tests/main.nf.test

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