From 064d40d846dced357cdcc6362ed2c3279cf76512 Mon Sep 17 00:00:00 2001
From: Phil Ewels <phil.ewels@scilifelab.se>
Date: Thu, 3 Feb 2022 15:30:48 +0100
Subject: [PATCH 1/2] Bump tower cli version to v0.5

---
 CHANGELOG.md | 4 ++++
 Dockerfile   | 2 +-
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 0a39fac..2f88cf7 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,5 +1,9 @@
 # nf-core/tower-action: Changelog
 
+## [[v2.3](https://github.com/nf-core/tower-action/releases/tag/v2.2)] - 2022-02-03
+
+Bump Tower CLI to version 0.5
+
 ## [[v2.2](https://github.com/nf-core/tower-action/releases/tag/v2.2)] - 2022-01-12
 
 Add option to pass nextflow config to Tower CLI.
diff --git a/Dockerfile b/Dockerfile
index 88252bf..f3e4912 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,6 +1,6 @@
 FROM alpine
 
-ARG TOWER_CLI_VERSION="0.4"
+ARG TOWER_CLI_VERSION="0.5"
 
 # Install Tower CLI
 RUN apk add --no-cache curl ca-certificates

From ff581ba4e47737cc7682d4b9c02f75e67fc54d91 Mon Sep 17 00:00:00 2001
From: Phil Ewels <phil.ewels@scilifelab.se>
Date: Thu, 3 Feb 2022 16:11:13 +0100
Subject: [PATCH 2/2] Update 'pipeline' default to include the GitHub URL
 prefix

---
 CHANGELOG.md | 15 +++++++++++++--
 README.md    |  6 +++---
 action.yml   |  2 +-
 3 files changed, 17 insertions(+), 6 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 2f88cf7..9bd427c 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,8 +1,19 @@
 # nf-core/tower-action: Changelog
 
-## [[v2.3](https://github.com/nf-core/tower-action/releases/tag/v2.2)] - 2022-02-03
+## [[v3.0](https://github.com/nf-core/tower-action/releases/tag/v3.0)]
 
-Bump Tower CLI to version 0.5
+### :warning: BREAKING CHANGE :warning
+
+The new version 0.5 of the Tower CLI only supports full URLs and no longer works with short-form
+GitHub repository names (`user/repo`). The full GitHub repository URL now needs to be used
+(`https://github.com/user/repo`).
+
+If you are setting `pipeline` in your workflow, please update it accordingly.
+Note that the default value is the current repo, so in most cases this value
+does not need to be specified.
+
+* Bump Tower CLI to version 0.5
+* Prefix the default value for `pipeline` with `https://github.com/` to match changed behaviour in the Tower CLI
 
 ## [[v2.2](https://github.com/nf-core/tower-action/releases/tag/v2.2)] - 2022-01-12
 
diff --git a/README.md b/README.md
index a4aa493..e660c58 100644
--- a/README.md
+++ b/README.md
@@ -113,12 +113,12 @@ Default: `api.tower.nf`
 
 ### `pipeline`
 
-**[Optional]** Pipeline repository name.
+**[Optional]** Workspace pipeline name or full pipeline URL.
 
-For example, `nf-core/rnaseq` or `https://github.com/nf-core/sarek`.
+For example, `https://github.com/nf-core/sarek`.
 Can also be the name of a preconfigured pipeline in Nextflow Tower.
 
-Default: The current GitHub repository (`github.repository`).
+Default: The current GitHub repository (`https://github.com/${{github.repository}}`).
 
 ### `revision`
 
diff --git a/action.yml b/action.yml
index 4567419..a912c15 100644
--- a/action.yml
+++ b/action.yml
@@ -23,7 +23,7 @@ inputs:
     default: https://api.tower.nf
   pipeline:
     description: Pipeline repository
-    default: ${{ github.repository }}
+    default: https://github.com/${{ github.repository }}
     required: false
   revision:
     description: Pipeline revision (release / branch)