diff --git a/.github/workflows/add-netlify-link.yml b/.github/workflows/add-netlify-link.yml
index 393ac2ef7d..33113f0fa4 100644
--- a/.github/workflows/add-netlify-link.yml
+++ b/.github/workflows/add-netlify-link.yml
@@ -12,7 +12,7 @@ jobs:
     steps:
       - name: Check for changed files
         id: changed-files
-        uses: tj-actions/changed-files@c65cd883420fd2eb864698a825fc4162dd94482c # v44
+        uses: tj-actions/changed-files@48d8f15b2aaa3d255ca5af3eba4870f807ce6b3c # v45
 
       - name: Add Netlify link to PR
         if: steps.changed-files.outputs.all_changed_files != ''
diff --git a/.github/workflows/add-tools-api-docs.yml b/.github/workflows/add-tools-api-docs.yml
index a4f6d0b42e..a539076ab4 100644
--- a/.github/workflows/add-tools-api-docs.yml
+++ b/.github/workflows/add-tools-api-docs.yml
@@ -72,7 +72,7 @@ jobs:
           git commit -m "[automated] Update nf-core/tools API docs for ${{ inputs.ref_name }}"
 
       - name: Create PR
-        uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c # v6
+        uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f # v7
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
           commit-message: Update nf-core/tools API docs for ${{inputs.ref_name}}
diff --git a/.github/workflows/build-json-files-and-md-cache.yml b/.github/workflows/build-json-files-and-md-cache.yml
index 27b8b39321..28abfdb5eb 100644
--- a/.github/workflows/build-json-files-and-md-cache.yml
+++ b/.github/workflows/build-json-files-and-md-cache.yml
@@ -87,7 +87,7 @@ jobs:
       # Create a PR if there are too many lines changed
       - name: Create PR with changes
         if: ${{ steps.check_lines.outputs.changes }}
-        uses: peter-evans/create-pull-request@c5a7806660adbe173f04e3e038b0ccdcd758773c # v6
+        uses: peter-evans/create-pull-request@5e914681df9dc83aa4e4905692ca88beb2f9e91f # v7
         with:
           token: ${{ secrets.CREATE_PR_TOKEN }}
           commit-message: 'chore: update pipeline.json and component.json'