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With the development of #91, it has become clear that we don't want to be fitting models in background pixels, nor have the background be considered by the cost function of ANTs.
Therefore, eddymotion should be very reluctant to go ahead without a brain mask.
Incidentally, I believe can easily include SynthStrip into dMRIPrep and then dilate that mask so that distortions do not cause cropping of the brain.
WDYT?
The text was updated successfully, but these errors were encountered:
With the development of #91, it has become clear that we don't want to be fitting models in background pixels, nor have the background be considered by the cost function of ANTs.
Therefore, eddymotion should be very reluctant to go ahead without a brain mask.
Incidentally, I believe can easily include SynthStrip into dMRIPrep and then dilate that mask so that distortions do not cause cropping of the brain.
WDYT?
The text was updated successfully, but these errors were encountered: