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Using a sequence of "b0" models doesn't currently work #118

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arokem opened this issue Dec 15, 2022 · 1 comment
Open

Using a sequence of "b0" models doesn't currently work #118

arokem opened this issue Dec 15, 2022 · 1 comment

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@arokem
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arokem commented Dec 15, 2022

Using:

models = ("b0", "b0")
...

em_affines = estimator.fit(
        dwdata=dwi_motion, align_kwargs=None, models=models, seed=None
    )

results in an error:

No such file or directory: '/home/tmgomez/eddymotion/src/eddymotion/config/dwi-to-b0_level1.json'

Is there a particular way to pass a sequence of models that avoids this? Or maybe we are not intended to use the "b0" model more than once?

@oesteban
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I didn't care to write ANTs parameters for a second level - but we probably want to have this for consistency.

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