pyproject.toml

[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"

[project]
name = "pydra-mrtrix3"
description = "pydra-mrtrix3 contains Pydra task specifications for MRtrix3 tools"
readme = "README.rst"
requires-python = ">=3.8"
dependencies = [
    "fileformats-medimage_mrtrix3 >=3.0.4a5",
    "numpy",
    "pydra >=0.23",
]
license = { file = "LICENSE" }
authors = [{ name = "Thomas G. Close", email = "tom.g.close@gmail.com" }]
maintainers = [{ name = "Thomas G. Close", email = "tom.g.close@gmail.com" }]
keywords = ["pydra"]
classifiers = [
    "Development Status :: 2 - Pre-Alpha",
    "Environment :: Console",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: Apache Software License",
    "Operating System :: MacOS :: MacOS X",
    "Operating System :: POSIX :: Linux",
    "Programming Language :: Python :: 3",
    "Topic :: Scientific/Engineering",
]
dynamic = ["version"]

[project.optional-dependencies]
dev = [
    "black",
    "pre-commit",
    "black >=22.12.0",
    "click >=8.1.3",
    "tqdm",
    "attrs >=23.1.0",
    "fileformats-extras >= 0.12.1",
]
doc = [
    "packaging",
    "sphinx >=2.1.2",
    "sphinx_rtd_theme",
    "sphinxcontrib-apidoc ~=0.3.0",
    "sphinxcontrib-napoleon",
    "sphinxcontrib-versioning",
]
test = [
    "pytest >= 4.4.0",
    "pytest-cov",
    "pytest-env",
    "pytest-xdist",
    "pytest-rerunfailures",
    "codecov",
    "fileformats-medimage_mrtrix3-extras",
]

[tool.hatch.version]
source = "vcs"

[tool.hatch.build.hooks.vcs]
version-file = "pydra/tasks/mrtrix3/_version.py"

[tool.hatch.build.targets.wheel]
packages = ["pydra"]
include-only = ["pydra/tasks/mrtrix3"]

[tool.black]
target-version = ["py38"]
exclude = "_version.py"

[tool.codespell]
ignore-words = ".codespell-ignorewords"

[tool.flake8]
doctests = true
per-file-ignores = ["__init__.py:F401"]
max-line-length = 88
select = "C,E,F,W,B,B950"
extend-ignore = ['E203', 'E501', 'E129', 'W503']


[tool.mypy]
python_version = "3.8"
ignore_missing_imports = true
strict = true
namespace_packages = true
explicit_package_bases = true
exclude = ["tests", "scripts", "docs", "build", "dist"]