add python script for ensemble vortex generation (#21)

* add python script for ensemble vortex generation

* Fix code style issues with oitnb

* write perturber class

* Fix code style issues with oitnb

* store variable information in classes

* add random test (ignore until stochastic)

* Fix code style issues with oitnb

* use `pint` for unit conversion and storage (#22)

* use `pint` for unit conversion and storage

* move perturbations into class implementations

* Fix code style issues with oitnb

* rename validation time property

* re-enable test with deterministic run

* add windows to tests

* remove environment.yml

* use CRS and transformer from `pyproj`

* update reference files

* Removing dependence on adcircpy (#23)

* Removing dependence on adcircpy
- [for now] copying over besttrackforcing from adcircpy into tropicalcyclone.atcf module
- removed NWS, BLAdh, geo, and time interval properties as they are related to adcirc inputs
- add test/output folders to .gitignore

* adding some help info for atcf tracks and adding __init__.py to subdirectories to find them

* Fix code style issues with oitnb

* remove unused imports

* refactor / fix plotting

* Fix code style issues with oitnb

* use inverse geodetic calc to get distance and bearing

* update dependencies

* update dependencies

* explicitly add GDAL

* remove GDAL

* Fix code style issues with oitnb

* update reference files

* fix configuration caching

* Fix code style issues with oitnb

Co-authored-by: William Pringle <[email protected]>
Co-authored-by: Lint Action <[email protected]>

.github/workflows/tests.yml

@@ -9,7 +9,7 @@ jobs:
     strategy:
       fail-fast: true
       matrix:
-        os: [ ubuntu-latest ]
+        os: [ ubuntu-latest, windows-latest ]
         python-version: [ 3.8, 3.9 ]
     steps:
       - name: Checkout repository
@@ -41,7 +41,7 @@ jobs:
           # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
           flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
       - name: Run tests with coverage
-        run: pytest --cov=ensembleperturbation --numprocesses auto --ignore=tests/test_parser.py
+        run: pytest --cov=ensembleperturbation --numprocesses auto
       - name: Upload coverage to Codecov
         if: matrix.python-version == 3.9
         uses: codecov/codecov-action@v1

.gitignore

@@ -141,3 +141,4 @@ cython_debug/
 
 .idea/
 /examples/data/*
+/tests/data/output

ensembleperturbation/parsing/adcirc.py

@@ -10,8 +10,8 @@
 from pandas import DataFrame
 from shapely.geometry import Point
 
-from ..utilities import get_logger
-from .utilities import decode_time
+from ensembleperturbation.parsing.utilities import decode_time
+from ensembleperturbation.utilities import get_logger
 
 LOGGER = get_logger('parsing.adcirc')
 

ensembleperturbation/parsing/comparison.py

@@ -12,8 +12,12 @@
 from pyproj import CRS, Geod
 import shapely
 
-from ..utilities import get_logger
-from .adcirc import fort61_stations_zeta, fort62_stations_uv, parse_adcirc_outputs
+from ensembleperturbation.parsing.adcirc import (
+    fort61_stations_zeta,
+    fort62_stations_uv,
+    parse_adcirc_outputs,
+)
+from ensembleperturbation.utilities import get_logger
 
 LOGGER = get_logger('parsing.comparison')