From 25b6c49e9250abe312c16802a0d8699b133af4e6 Mon Sep 17 00:00:00 2001 From: ZhuBry Date: Thu, 1 Feb 2024 08:21:06 -0500 Subject: [PATCH] updated docker link --- website/docs/Guides/Visualization.md | 1 + website/docs/getting_started.md | 15 +-------------- 2 files changed, 2 insertions(+), 14 deletions(-) diff --git a/website/docs/Guides/Visualization.md b/website/docs/Guides/Visualization.md index e36689b0f..c1bb687d8 100644 --- a/website/docs/Guides/Visualization.md +++ b/website/docs/Guides/Visualization.md @@ -18,6 +18,7 @@ dot -Tpdf -o example_file.pdf example_file.dot The above command will create a example_file.pdf file that shows the graph. For large graphs, Adobe Acrobat Reader may have troubles rendering the graph in which case we recommend opening the PDF file using the "Preview" image viewer software available in MacOS. Below are examples of different levels of debruijn graphs that can be produced from Lancet2 outputs: + (a) Raw: ![raw_dot](../../static/img/raw_dot.png) (b) Compressed: ![compressed_dot](../../static/img/compressed_dot.png) (c) Fully pruned: ![final_dot](../../static/img/final_dot.png) diff --git a/website/docs/getting_started.md b/website/docs/getting_started.md index 60af26011..b37be1bb4 100644 --- a/website/docs/getting_started.md +++ b/website/docs/getting_started.md @@ -37,12 +37,7 @@ lancet2 --version ### Docker -Pre-build docker images for Lancet2 are available on [DockerHub](https://hub.docker.com/r/rmusunuri/lancet2) - -```bash -docker pull rmusunuri/lancet2:gcc -docker run rmusunuri/lancet2:gcc lancet2 --version -``` +Pre-built docker images for Lancet2 are available [here](https://console.cloud.google.com/artifacts/docker/nygc-app-c-148c/us-central1/lancet-public/lancet) You can also build a new image from the Dockerfile provided in the repository: @@ -52,14 +47,6 @@ docker build --platform linux/amd64 -t lancet2 -f docker/gcc.Dockerfile . docker run --platform linux/amd64 -it lancet2 lancet2 --version ``` -### Singularity/Apptainer - -To build a [Singularity/Apptainer](https://apptainer.org/) container directly from the DockerHub images use the following command - -```bash -singularity build lancet2.sif docker://rmusunuri/lancet2:gcc -``` - ## Basic Usage Here is a basic run of the Lancet tool from the newly created build directory: