diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index f414ba55d..0abaa6494 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3035,6 +3035,8 @@ Declaration(Class(obo:CL_4033064)) Declaration(Class(obo:CL_4033065)) Declaration(Class(obo:CL_4033066)) Declaration(Class(obo:CL_4033067)) +Declaration(Class(obo:CL_4033083)) +Declaration(Class(obo:CL_4033084)) Declaration(Class(obo:CL_4040000)) Declaration(Class(obo:CL_4040001)) Declaration(Class(obo:CL_4040002)) @@ -3145,8 +3147,9 @@ Declaration(Class(obo:PR_000007479)) Declaration(Class(obo:PR_000007489)) Declaration(Class(obo:PR_000007785)) Declaration(Class(obo:PR_000009981)) -Declaration(Class(obo:PR_000013047)) Declaration(Class(obo:PR_000010529)) +Declaration(Class(obo:PR_000013047)) +Declaration(Class(obo:PR_000013433)) Declaration(Class(obo:PR_000013502)) Declaration(Class(obo:PR_000014419)) Declaration(Class(obo:PR_000014898)) @@ -7713,7 +7716,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000501 "granulosa cell of o AnnotationAssertion(rdfs:label obo:CL_0000501 "granulosa cell") SubClassOf(obo:CL_0000501 obo:CL_0000174) SubClassOf(obo:CL_0000501 obo:CL_0002174) -SubClassOf(obo:CL_0000501 ObjectSomeValuesFrom(obo:RO_0002207 obo:CL_4033066)) +SubClassOf(obo:CL_0000501 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_4033066)) # Class: obo:CL_0000502 (type D enteroendocrine cell) @@ -9631,8 +9634,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000711 "BTO:0002236") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000711 "MESH:D054885") AnnotationAssertion(rdfs:label obo:CL_0000711 "cumulus cell") SubClassOf(obo:CL_0000711 obo:CL_0000154) -SubClassOf(obo:CL_0000711 obo:CL_0002174) -SubClassOf(obo:CL_0000711 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000501)) +SubClassOf(obo:CL_0000711 obo:CL_0000501) +SubClassOf(obo:CL_0000711 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_4033084)) # Class: obo:CL_0000712 (stratum granulosum cell) @@ -15530,6 +15533,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002174 "FMA:70589") AnnotationAssertion(rdfs:label obo:CL_0002174 "follicular cell of ovary") SubClassOf(obo:CL_0002174 obo:CL_0000500) SubClassOf(obo:CL_0002174 obo:CL_0002078) +SubClassOf(obo:CL_0002174 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001305)) # Class: obo:CL_0002175 (primary follicular cell of ovary) @@ -32053,11 +32057,11 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:32759216") Annotation(ob AnnotationAssertion(rdfs:label obo:CL_4033066 "pre-granulosa cell") SubClassOf(obo:CL_4033066 obo:CL_0000630) SubClassOf(obo:CL_4033066 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992)) -SubClassOf(obo:CL_4033066 ObjectSomeValuesFrom(obo:RO_0002210 obo:CL_0000501)) +SubClassOf(obo:CL_4033066 ObjectSomeValuesFrom(obo:RO_0002210 obo:CL_4033083)) # Class: obo:CL_4033067 (mural granulosa cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27815559") Annotation(oboInOwl:hasDbXref "PMID:33970370") Annotation(oboInOwl:hasDbXref "PMID:34198768") obo:IAO_0000115 obo:CL_4033067 "A follicular cell of ovary that differentiates from a granulosa cell during the secondary follicle stage. Mural granulosa cells line the inner surface of the follicle wall, surrounding the fluid-filled antral cavity. These cells produce oestrogen during the follicular phase in response to follicle-stimulating hormone (FSH), and progesterone after ovulation in response to luteinizing hormone (LH).") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27815559") Annotation(oboInOwl:hasDbXref "PMID:33970370") Annotation(oboInOwl:hasDbXref "PMID:34198768") obo:IAO_0000115 obo:CL_4033067 "A follicular cell of ovary that differentiates from a cuboidal granulosa cell during the secondary follicle stage. Mural granulosa cells line the inner surface of the follicle wall, surrounding the fluid-filled antral cavity. These cells produce oestrogen during the follicular phase in response to follicle-stimulating hormone (FSH), and progesterone after ovulation in response to luteinizing hormone (LH).") AnnotationAssertion(terms:contributor obo:CL_4033067 ) AnnotationAssertion(terms:contributor obo:CL_4033067 ) AnnotationAssertion(terms:date obo:CL_4033067 "2024-06-07T12:15:13Z"^^xsd:dateTime) @@ -32065,9 +32069,38 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_4033067 "EFO:0005289") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1530/REP-16-0500") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033067 "MGC") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34198768") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033067 "mural GC") AnnotationAssertion(rdfs:label obo:CL_4033067 "mural granulosa cell") -SubClassOf(obo:CL_4033067 obo:CL_0002174) +SubClassOf(obo:CL_4033067 obo:CL_0000501) SubClassOf(obo:CL_4033067 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000992)) -SubClassOf(obo:CL_4033067 ObjectSomeValuesFrom(obo:RO_0002207 obo:CL_0000501)) +SubClassOf(obo:CL_4033067 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_4033084)) + +# Class: obo:CL_4033083 (squamous granulosa cell) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28892263") obo:IAO_0000115 obo:CL_4033083 "A granulosa cell that has a squamous morphology and form a single layer around the oocyte in primordial follicles. This cell develops directly into a cuboidal granulosa cell during the primordial-to-primary follicle transition.") +AnnotationAssertion(terms:contributor obo:CL_4033083 ) +AnnotationAssertion(terms:date obo:CL_4033083 "2024-09-24T13:13:24Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:22402964") oboInOwl:hasExactSynonym obo:CL_4033083 "flattened granulosa cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33914868") oboInOwl:hasRelatedSynonym obo:CL_4033083 "pre-granulosa cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33914868") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033083 "squamous GC") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "https://orcid.org/0000-0001-6677-8489") rdfs:comment obo:CL_4033083 "Often in literature squamous granulosa cell and pre-granulosa cell are used as synonyms. However, this term only makes reference to the quiescent granulosa cells that surround the primordial ovarian follicle, while a pre-granulosa cell proliferates to form the primordial follicle (and thus cells become the squamous granulosa cells).") +AnnotationAssertion(rdfs:label obo:CL_4033083 "squamous granulosa cell") +SubClassOf(obo:CL_4033083 obo:CL_0000501) +SubClassOf(obo:CL_4033083 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003981)) +SubClassOf(obo:CL_4033083 ObjectSomeValuesFrom(obo:RO_0002207 obo:CL_4033066)) +SubClassOf(obo:CL_4033083 ObjectSomeValuesFrom(obo:RO_0002210 obo:CL_4033084)) + +# Class: obo:CL_4033084 (cuboidal granulosa cell) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:28892263") obo:IAO_0000115 obo:CL_4033084 "A granulosa cell that has a cuboidal morphology and develops from squamous granulosa cell during the transition between primordial follicle to primary follicle. Cuboidal granulosa cells proliferate to form a second layer within secondary follicles.") +AnnotationAssertion(terms:contributor obo:CL_4033084 ) +AnnotationAssertion(terms:date obo:CL_4033084 "2024-09-24T13:14:57Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19001500") oboInOwl:hasExactSynonym obo:CL_4033084 "columnar granulosa cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:31849844") oboInOwl:hasExactSynonym obo:CL_4033084 "cuboidal epithelial granulosa cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:19001500") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033084 "columnar GC") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33914868") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033084 "cuboidal GC") +AnnotationAssertion(rdfs:label obo:CL_4033084 "cuboidal granulosa cell") +SubClassOf(obo:CL_4033084 obo:CL_0000501) +SubClassOf(obo:CL_4033084 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001305)) +SubClassOf(obo:CL_4033084 ObjectSomeValuesFrom(obo:RO_0002207 obo:CL_4033083)) # Class: obo:CL_4040000 (glial restricted tripotential precursor cell)