From 2a104cf86d892055400ade16f2007d839a3e950d Mon Sep 17 00:00:00 2001 From: Alida Avola <81253886+AvolaAmg@users.noreply.github.com> Date: Thu, 31 Oct 2024 16:09:04 +0000 Subject: [PATCH] [NTR] CGRP-expressing neuron (#2712) Fixes #2445 --- src/ontology/cl-edit.owl | 20 +- src/ontology/components/mappings.owl | 20 +- src/ontology/imports/go_terms.txt | 1 + src/ontology/imports/merged_import.owl | 301 ++++++++++++++++++------- src/patterns/definitions.owl | 4 +- 5 files changed, 252 insertions(+), 94 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index ac1c26870..7d13c698e 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3079,6 +3079,7 @@ Declaration(Class(obo:CL_4042029)) Declaration(Class(obo:CL_4042030)) Declaration(Class(obo:CL_4042031)) Declaration(Class(obo:CL_4042032)) +Declaration(Class(obo:CL_4042033)) Declaration(Class(obo:CL_4047006)) Declaration(Class(obo:CL_4047007)) Declaration(Class(obo:CL_4047011)) @@ -3347,7 +3348,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition") AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to") -# Annotation Property: obo:IAO_0000700 (preferred_root) +# Annotation Property: obo:IAO_0000700 (has ontology root term) AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root") @@ -3441,11 +3442,11 @@ AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym") AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference") -# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym) +# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym) AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym") -# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym) +# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym) AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym") @@ -6845,6 +6846,7 @@ SubClassOf(obo:CL_0000378 obo:CL_0000630) AnnotationAssertion(rdfs:label obo:CL_0000379 "sensory processing neuron") SubClassOf(obo:CL_0000379 obo:CL_0000540) SubClassOf(obo:CL_0000379 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001017)) +SubClassOf(obo:CL_0000379 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0050893)) # Class: obo:CL_0000380 (thecogen cell) @@ -32639,6 +32641,18 @@ SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002202 obo:UBERON_0004026 SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061534)) SubClassOf(obo:CL_4042032 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000012318)) +# Class: obo:CL_4042033 (CGRP-expressing neuron) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34061020") obo:IAO_0000115 obo:CL_4042033 "An interneuron neuron characterized by the expression of calcitonin gene-related peptide (CGRP), a 37-amino acid neuropeptide. This neuron type is involved in nociception and pain modulation by facilitating the transmission of nociceptive signals from peripheral sensory nerve endings to central nervous system structures. This neuron type is found in the dorsal root ganglia (DRG) and trigeminal ganglion, and the spinal cord dorsal horn.") +AnnotationAssertion(terms:contributor obo:CL_4042033 ) +AnnotationAssertion(terms:date obo:CL_4042033 "2024-10-30T15:35:08Z"^^xsd:dateTime) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34061020") oboInOwl:hasExactSynonym obo:CL_4042033 "Calcitonin gene-related peptide neuron") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34061020") oboInOwl:hasRelatedSynonym obo:CL_4042033 "CGRP-expressing interneuron") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34061020") oboInOwl:hasRelatedSynonym obo:CL_4042033 "CGRP-positive neuron") +AnnotationAssertion(rdfs:label obo:CL_4042033 "CGRP-expressing neuron"@en) +SubClassOf(obo:CL_4042033 obo:CL_0000526) +SubClassOf(obo:CL_4042033 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001017)) + # Class: obo:CL_4047006 (fetal artery endothelial cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_4047006 "An endothelial cell that lines an artery in the fetal circulatory system.") diff --git a/src/ontology/components/mappings.owl b/src/ontology/components/mappings.owl index 670fec541..38aa1c55c 100644 --- a/src/ontology/components/mappings.owl +++ b/src/ontology/components/mappings.owl @@ -819,6 +819,15 @@ ZFA:0009066 + + ZFA:0009067 + + + + + ZFA:0009067 + + ZFA:0009068 @@ -4550,18 +4559,9 @@ FBbt:00006009 - - ZFA:0009067 - - - - - ZFA:0009067 - - - + diff --git a/src/ontology/imports/go_terms.txt b/src/ontology/imports/go_terms.txt index 67d08ac7f..b35611877 100644 --- a/src/ontology/imports/go_terms.txt +++ b/src/ontology/imports/go_terms.txt @@ -13,3 +13,4 @@ GO:0036053 GO:0036376 GO:1990573 GO:0045428 +GO:0050893 diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 80dc4c77c..f60347f34 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-10-17") + +Annotation(owl:versionInfo "2024-10-30") Declaration(Class()) Declaration(Class()) @@ -45,7 +45,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4649,6 +4648,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8646,6 +8646,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8735,6 +8736,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8749,7 +8752,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -8956,6 +8959,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -9043,6 +9047,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -10872,6 +10877,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -14336,8 +14343,8 @@ We don't have definitions of 'meaning' or 'expression' or 'property'. For 'refer Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with."@en) -AnnotationAssertion(rdfs:label "definition") AnnotationAssertion(rdfs:label "definition"@en) +AnnotationAssertion(rdfs:label "definition") # Annotation Property: (editor note) @@ -14358,8 +14365,8 @@ AnnotationAssertion( "true"^^xsd:boolean) AnnotationAssertion( "term_tracker_item") AnnotationAssertion(rdfs:comment "The 'tracker item' can associate a tracker with a specific ontology term."@en) -AnnotationAssertion(rdfs:label "term tracker item") AnnotationAssertion(rdfs:label "term tracker item"@en) +AnnotationAssertion(rdfs:label "term tracker item") # Annotation Property: (expand expression to) @@ -14374,15 +14381,15 @@ AnnotationAssertion( "has_ontology_root_term") AnnotationAssertion( "true"^^xsd:boolean) AnnotationAssertion( "has_ontology_root_term") -AnnotationAssertion(rdfs:label "has ontology root term") AnnotationAssertion(rdfs:label "has ontology root term"@en) +AnnotationAssertion(rdfs:label "has ontology root term") # Annotation Property: (term replaced by) AnnotationAssertion( "Use on obsolete terms, relating the term to another term that can be used as a substitute"@en) AnnotationAssertion(rdfs:comment "Add as annotation triples in the granting ontology"@en) -AnnotationAssertion(rdfs:label "term replaced by") AnnotationAssertion(rdfs:label "term replaced by"@en) +AnnotationAssertion(rdfs:label "term replaced by") # Annotation Property: (defined by construct) @@ -14881,12 +14888,12 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "part_of") -AnnotationAssertion(rdfs:label "part of") AnnotationAssertion(rdfs:label "part of"@en) +AnnotationAssertion(rdfs:label "part of") AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(rdfs:seeAlso ) -AnnotationAssertion(rdfs:seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Part_of"^^xsd:anyURI) +AnnotationAssertion(rdfs:seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of") SubObjectPropertyOf( ) InverseObjectProperties( ) TransitiveObjectProperty() @@ -14906,8 +14913,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "has_part") -AnnotationAssertion(rdfs:label "has part") AnnotationAssertion(rdfs:label "has part"@en) +AnnotationAssertion(rdfs:label "has part") SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -14920,8 +14927,8 @@ AnnotationAssertion( "preceded_by") AnnotationAssertion( ) AnnotationAssertion( "preceded_by") -AnnotationAssertion(rdfs:label "preceded by") AnnotationAssertion(rdfs:label "preceded by"@en) +AnnotationAssertion(rdfs:label "preceded by") SubObjectPropertyOf( ) InverseObjectProperties( ) TransitiveObjectProperty() @@ -14936,8 +14943,8 @@ AnnotationAssertion( "precedes") AnnotationAssertion( ) AnnotationAssertion( "precedes") -AnnotationAssertion(rdfs:label "precedes") AnnotationAssertion(rdfs:label "precedes"@en) +AnnotationAssertion(rdfs:label "precedes") SubObjectPropertyOf( ) TransitiveObjectProperty() ObjectPropertyDomain( ) @@ -14954,8 +14961,8 @@ AnnotationAssertion( ) AnnotationAssertion( "occurs_in") AnnotationAssertion(rdfs:comment "Paraphrase of definition: a relation between a process and an independent continuant, in which the process takes place entirely within the independent continuant") -AnnotationAssertion(rdfs:label "occurs in") AnnotationAssertion(rdfs:label "occurs in"@en) +AnnotationAssertion(rdfs:label "occurs in") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Occurs_in"^^xsd:anyURI) InverseObjectProperties( ) ObjectPropertyDomain( ) @@ -15003,8 +15010,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "bearer_of") AnnotationAssertion( "bearer_of") -AnnotationAssertion(rdfs:label "bearer of") AnnotationAssertion(rdfs:label "has characteristic"@en) +AnnotationAssertion(rdfs:label "bearer of") InverseFunctionalObjectProperty() ObjectPropertyRange( ) @@ -15015,8 +15022,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "participates_in") AnnotationAssertion( "participates_in") -AnnotationAssertion(rdfs:label "participates in") AnnotationAssertion(rdfs:label "participates in"@en) +AnnotationAssertion(rdfs:label "participates in") InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -15029,8 +15036,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "has_participant") AnnotationAssertion( "has_participant") -AnnotationAssertion(rdfs:label "has participant") AnnotationAssertion(rdfs:label "has participant"@en) +AnnotationAssertion(rdfs:label "has participant") ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -15137,8 +15144,8 @@ AnnotationAssertion( ) AnnotationAssertion( "bounding_layer_of") AnnotationAssertion(rdfs:comment "A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane.") -AnnotationAssertion(rdfs:label "bounding layer of") AnnotationAssertion(rdfs:label "bounding layer of"@en) +AnnotationAssertion(rdfs:label "bounding layer of") SubObjectPropertyOf( ) ObjectPropertyDomain( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) ObjectPropertyRange( ) @@ -15183,8 +15190,8 @@ AnnotationAssertion( "immediately_preceded_by") AnnotationAssertion( "immediately_preceded_by") AnnotationAssertion(rdfs:comment "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)"@en) -AnnotationAssertion(rdfs:label "immediately preceded by") AnnotationAssertion(rdfs:label "immediately preceded by"@en) +AnnotationAssertion(rdfs:label "immediately preceded by") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15196,8 +15203,8 @@ AnnotationAssertion( ) AnnotationAssertion( "immediately_precedes") AnnotationAssertion(rdfs:comment "X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)"@en) -AnnotationAssertion(rdfs:label "immediately precedes") AnnotationAssertion(rdfs:label "immediately precedes"@en) +AnnotationAssertion(rdfs:label "immediately precedes") SubObjectPropertyOf( ) # Object Property: (has soma location) @@ -15303,8 +15310,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "overlaps") -AnnotationAssertion(rdfs:label "overlaps") AnnotationAssertion(rdfs:label "overlaps"@en) +AnnotationAssertion(rdfs:label "overlaps") SubObjectPropertyOf( ) SymmetricObjectProperty() @@ -15425,8 +15432,8 @@ AnnotationAssertion( "has_component") AnnotationAssertion( ) AnnotationAssertion( "has_component") -AnnotationAssertion(rdfs:label "has component") AnnotationAssertion(rdfs:label "has component"@en) +AnnotationAssertion(rdfs:label "has component") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) @@ -15490,8 +15497,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "regulates") -AnnotationAssertion(rdfs:label "regulates") AnnotationAssertion(rdfs:label "regulates"@en) +AnnotationAssertion(rdfs:label "regulates") SubObjectPropertyOf( ) InverseObjectProperties( ) TransitiveObjectProperty() @@ -15509,8 +15516,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "negatively_regulates") -AnnotationAssertion(rdfs:label "negatively regulates") AnnotationAssertion(rdfs:label "negatively regulates"@en) +AnnotationAssertion(rdfs:label "negatively regulates") SubObjectPropertyOf( ) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15525,8 +15532,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "positively_regulates") -AnnotationAssertion(rdfs:label "positively regulates") AnnotationAssertion(rdfs:label "positively regulates"@en) +AnnotationAssertion(rdfs:label "positively regulates") SubObjectPropertyOf( ) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15540,8 +15547,8 @@ AnnotationAssertion( "capable_of") AnnotationAssertion( ) AnnotationAssertion( "capable_of") -AnnotationAssertion(rdfs:label "capable of") AnnotationAssertion(rdfs:label "capable of"@en) +AnnotationAssertion(rdfs:label "capable of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -15553,8 +15560,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "capable_of_part_of") AnnotationAssertion( "capable_of_part_of") -AnnotationAssertion(rdfs:label "capable of part of") AnnotationAssertion(rdfs:label "capable of part of"@en) +AnnotationAssertion(rdfs:label "capable of part of") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15577,8 +15584,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "adjacent_to") -AnnotationAssertion(rdfs:label "adjacent to") AnnotationAssertion(rdfs:label "adjacent to"@en) +AnnotationAssertion(rdfs:label "adjacent to") SubObjectPropertyOf( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -15615,8 +15622,8 @@ AnnotationAssertion( "starts_with") AnnotationAssertion( ) AnnotationAssertion( "starts_with") -AnnotationAssertion(rdfs:label "starts with") AnnotationAssertion(rdfs:label "starts with"@en) +AnnotationAssertion(rdfs:label "starts with") SubObjectPropertyOf( ) SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -15651,8 +15658,8 @@ AnnotationAssertion( "ends_with") AnnotationAssertion( ) AnnotationAssertion( "ends_with") -AnnotationAssertion(rdfs:label "ends with") AnnotationAssertion(rdfs:label "ends with"@en) +AnnotationAssertion(rdfs:label "ends with") SubObjectPropertyOf( ) SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -15665,8 +15672,8 @@ AnnotationAssertion( "has_start_location") AnnotationAssertion( ) AnnotationAssertion( "has_start_location") -AnnotationAssertion(rdfs:label "has start location") AnnotationAssertion(rdfs:label "has start location"@en) +AnnotationAssertion(rdfs:label "has start location") SubObjectPropertyOf( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -15679,8 +15686,8 @@ AnnotationAssertion( "has_end_location") AnnotationAssertion( ) AnnotationAssertion( "has_end_location") -AnnotationAssertion(rdfs:label "has end location") AnnotationAssertion(rdfs:label "has end location"@en) +AnnotationAssertion(rdfs:label "has end location") SubObjectPropertyOf( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -15696,8 +15703,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "has_input") -AnnotationAssertion(rdfs:label "has input") AnnotationAssertion(rdfs:label "has input"@en) +AnnotationAssertion(rdfs:label "has input") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Has_input"^^xsd:anyURI) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15714,8 +15721,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "has_output") -AnnotationAssertion(rdfs:label "has output") AnnotationAssertion(rdfs:label "has output"@en) +AnnotationAssertion(rdfs:label "has output") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Has_output"^^xsd:anyURI) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15829,8 +15836,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "results_in_developmental_progression_of") AnnotationAssertion( "results_in_developmental_progression_of") -AnnotationAssertion(rdfs:label "results in developmental progression of") AnnotationAssertion(rdfs:label "results in developmental progression of"@en) +AnnotationAssertion(rdfs:label "results in developmental progression of") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15846,8 +15853,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "results_in_development_of") -AnnotationAssertion(rdfs:label "results in development of") AnnotationAssertion(rdfs:label "results in development of"@en) +AnnotationAssertion(rdfs:label "results in development of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15860,8 +15867,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "results_in_formation_of") -AnnotationAssertion(rdfs:label "results in formation of") AnnotationAssertion(rdfs:label "results in formation of anatomical entity"@en) +AnnotationAssertion(rdfs:label "results in formation of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15876,8 +15883,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "results_in_morphogenesis_of") -AnnotationAssertion(rdfs:label "results in morphogenesis of") AnnotationAssertion(rdfs:label "results in morphogenesis of"@en) +AnnotationAssertion(rdfs:label "results in morphogenesis of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15891,8 +15898,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "results_in_maturation_of") -AnnotationAssertion(rdfs:label "results in maturation of") AnnotationAssertion(rdfs:label "results in maturation of"@en) +AnnotationAssertion(rdfs:label "results in maturation of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15944,8 +15951,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "results_in_acquisition_of_features_of") -AnnotationAssertion(rdfs:label "results in acquisition of features of") AnnotationAssertion(rdfs:label "results in acquisition of features of"@en) +AnnotationAssertion(rdfs:label "results in acquisition of features of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) ObjectPropertyRange( ) @@ -15990,8 +15997,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "regulates_levels_of") AnnotationAssertion( "regulates_levels_of") -AnnotationAssertion(rdfs:label "regulates levels of") AnnotationAssertion(rdfs:label "regulates levels of"@en) +AnnotationAssertion(rdfs:label "regulates levels of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -16004,8 +16011,8 @@ AnnotationAssertion( "regulated_by") AnnotationAssertion( ) AnnotationAssertion( "regulated_by") -AnnotationAssertion(rdfs:label "regulated by") AnnotationAssertion(rdfs:label "regulated by"@en) +AnnotationAssertion(rdfs:label "regulated by") SubObjectPropertyOf( ) TransitiveObjectProperty() ObjectPropertyDomain( ) @@ -16019,8 +16026,8 @@ AnnotationAssertion( "negatively_regulated_by") AnnotationAssertion( ) AnnotationAssertion( "negatively_regulated_by") -AnnotationAssertion(rdfs:label "negatively regulated by") AnnotationAssertion(rdfs:label "negatively regulated by"@en) +AnnotationAssertion(rdfs:label "negatively regulated by") SubObjectPropertyOf( ) # Object Property: (positively regulated by) @@ -16031,8 +16038,8 @@ AnnotationAssertion( "positively_regulated_by") AnnotationAssertion( ) AnnotationAssertion( "positively_regulated_by") -AnnotationAssertion(rdfs:label "positively regulated by") AnnotationAssertion(rdfs:label "positively regulated by"@en) +AnnotationAssertion(rdfs:label "positively regulated by") SubObjectPropertyOf( ) # Object Property: (related via localization to) @@ -16052,8 +16059,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "has_target_start_location") -AnnotationAssertion(rdfs:label "has target start location") AnnotationAssertion(rdfs:label "has target start location"@en) +AnnotationAssertion(rdfs:label "has target start location") SubObjectPropertyOf( ) # Object Property: (has target end location) @@ -16066,8 +16073,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "has_target_end_location") -AnnotationAssertion(rdfs:label "has target end location") AnnotationAssertion(rdfs:label "has target end location"@en) +AnnotationAssertion(rdfs:label "has target end location") SubObjectPropertyOf( ) # Object Property: (results in transport along) @@ -16077,8 +16084,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "results_in_transport_along") AnnotationAssertion( "results_in_transport_along") -AnnotationAssertion(rdfs:label "results in transport along") AnnotationAssertion(rdfs:label "results in transport along"@en) +AnnotationAssertion(rdfs:label "results in transport along") SubObjectPropertyOf( ) # Object Property: (results in transport across) @@ -16089,8 +16096,8 @@ AnnotationAssertion( "results_in_transport_across") AnnotationAssertion( ) AnnotationAssertion( "results_in_transport_across") -AnnotationAssertion(rdfs:label "results in transport across") AnnotationAssertion(rdfs:label "results in transport across"@en) +AnnotationAssertion(rdfs:label "results in transport across") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -16100,8 +16107,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "results_in_growth_of") AnnotationAssertion( "results_in_growth_of") -AnnotationAssertion(rdfs:label "results in growth of") AnnotationAssertion(rdfs:label "results in growth of"@en) +AnnotationAssertion(rdfs:label "results in growth of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -16111,8 +16118,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "results_in_transport_to_from_or_in") AnnotationAssertion( "results_in_transport_to_from_or_in") -AnnotationAssertion(rdfs:label "results in transport to from or in") AnnotationAssertion(rdfs:label "results in transport to from or in"@en) +AnnotationAssertion(rdfs:label "results in transport to from or in") SubObjectPropertyOf( ) # Object Property: (member of) @@ -16146,8 +16153,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "output_of") -AnnotationAssertion(rdfs:label "output of") AnnotationAssertion(rdfs:label "output of"@en) +AnnotationAssertion(rdfs:label "output of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -16265,8 +16272,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "causally_downstream_of") AnnotationAssertion( "causally_downstream_of") -AnnotationAssertion(rdfs:label "causally downstream of") AnnotationAssertion(rdfs:label "causally downstream of"@en) +AnnotationAssertion(rdfs:label "causally downstream of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -16300,8 +16307,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "causally_upstream_of") -AnnotationAssertion(rdfs:label "causally upstream of") AnnotationAssertion(rdfs:label "causally upstream of"@en) +AnnotationAssertion(rdfs:label "causally upstream of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -16656,8 +16663,8 @@ AnnotationAssertion( ) AnnotationAssertion( "produces") AnnotationAssertion(rdfs:comment "Note that this definition doesn't quite distinguish the output of a transformation process from a production process, which is related to the identity/granularity issue.") -AnnotationAssertion(rdfs:label "produces") AnnotationAssertion(rdfs:label "produces"@en) +AnnotationAssertion(rdfs:label "produces") InverseObjectProperties( ) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -16670,8 +16677,8 @@ AnnotationAssertion( "produced_by") AnnotationAssertion( ) AnnotationAssertion( "produced_by") -AnnotationAssertion(rdfs:label "produced by") AnnotationAssertion(rdfs:label "produced by"@en) +AnnotationAssertion(rdfs:label "produced by") ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -16751,8 +16758,8 @@ AnnotationAssertion( "external") AnnotationAssertion( "has_small_molecule_activator") AnnotationAssertion( "has_small_molecule_activator") -AnnotationAssertion(rdfs:label "has small molecule activator") AnnotationAssertion(rdfs:label "has small molecule activator"@en) +AnnotationAssertion(rdfs:label "has small molecule activator") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -16768,8 +16775,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "acts_on_population_of") -AnnotationAssertion(rdfs:label "acts on population of") AnnotationAssertion(rdfs:label "acts on population of"@en) +AnnotationAssertion(rdfs:label "acts on population of") SubObjectPropertyOf( ) # Object Property: (is small molecule regulator of) @@ -16801,8 +16808,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "results_in_fusion_of") -AnnotationAssertion(rdfs:label "results in fusion of") AnnotationAssertion(rdfs:label "results in fusion of"@en) +AnnotationAssertion(rdfs:label "results in fusion of") SubObjectPropertyOf( ) # Object Property: (has synaptic IO in region) @@ -17085,7 +17092,7 @@ SubClassOf( ) -# Class: (cell) +# Class: () DisjointClasses( ) DisjointClasses( ) @@ -67171,6 +67178,15 @@ AnnotationAssertion(rdfs:label "mult EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (sensory processing) + +AnnotationAssertion(Annotation( "GOC:dph") Annotation( "ISBN:0721662544") "Any neural process required for an organism to sense and interpret the dimensions of a sensory experience: modality, location, intensity and affect.") +AnnotationAssertion( "biological_process") +AnnotationAssertion( "GO:0050893") +AnnotationAssertion(rdfs:label "sensory processing") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (response to stimulus) AnnotationAssertion(Annotation( "GOC:ai") Annotation( "GOC:bf") "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.") @@ -117135,7 +117151,7 @@ AnnotationAssertion( "The definition above excludes protein complexes, which some also consider a protein. Those who wish to refer to a class representing both senses of the word are directed to CHEBI:36080. Note that the definition allows for experimentally-manipulated genes, and allows for artifically-produced derivatives that mimic those found naturally. Proteins (in the sense defined here) that descended from a common ancestor can be classified into families and superfamilies composed of products of evolutionarily-related genes. The domain architecture of a protein is described by the order of its constituent domains. Proteins with the same domains in the same order are defined as homeomorphic [PRO:WCB].") AnnotationAssertion(rdfs:label "protein") SubClassOf( ) -SubClassOf( ) +SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) @@ -118718,6 +118734,7 @@ SubClassOf( (prominin) AnnotationAssertion(Annotation( "InterPro:IPR008795") Annotation( "PMID:11467842") "A protein with core architecture consisting of one Prominin (Pfam:PF05478) domain. The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and human prominin and prominin-like 1 are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain.") +AnnotationAssertion( "PANTHER:PTHR22730") AnnotationAssertion( "PIRSF:PIRSF017831") AnnotationAssertion( "protein") AnnotationAssertion( "PR:000001785") @@ -121095,6 +121112,21 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "netrin-G1") SubClassOf( ) +# Class: (paired box protein Pax-6) + +AnnotationAssertion(Annotation( "PRO:DNx") "A paired box protein PAX group IV that is a translation product of the human PAX6 gene or a 1:1 ortholog thereof.") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "PAX6") +AnnotationAssertion( "aniridia type II protein") +AnnotationAssertion( "oculorhombin") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( ) "AN2") +AnnotationAssertion(Annotation( ) "Pax-6") +AnnotationAssertion(Annotation( ) "Sey") +AnnotationAssertion( "PR:000012318") +AnnotationAssertion(rdfs:comment "Category=gene.") +AnnotationAssertion(rdfs:label "paired box protein Pax-6") +SubClassOf( ) + # Class: (proenkephalin-B) AnnotationAssertion(Annotation( "PRO:DNx") "A protein that is a translation product of the human PDYN gene or a 1:1 ortholog thereof.") @@ -122256,6 +122288,27 @@ AnnotationAssertion(rdfs:comment " AnnotationAssertion(rdfs:label "glycoprotein") SubClassOf( ) +# Class: (paired box protein PAX) + +AnnotationAssertion(Annotation( "PIRSF:PIRSF038195") Annotation( "PMID:9297966") Annotation( "PRO:CNA") "A protein that contains a copy of the 'Paired box' domain (Pfam:PF00292), a conserved amino acid motif with DNA-binding activity. Members of this class are transcription factors involved in pattern formation during embryogenesis, possibly by determining the time and place of organ initiation or morphogenesis.") +AnnotationAssertion( "PIRSF:PIRSF038195") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000037797") +AnnotationAssertion(rdfs:comment "Category=family.") +AnnotationAssertion(rdfs:label "paired box protein PAX") +SubClassOf( ) + +# Class: (paired box protein PAX group IV) + +AnnotationAssertion(Annotation( "PIRSF:PIRSF500778") Annotation( "PMID:11750700") Annotation( "PMID:24951566") Annotation( "PRO:CNA") "A paired box protein PAX that contains, in addition to the 'Paired box' domain (Pfam:PF00292), a C-terminal Homeobox domain (Pfam:PF00046).") +AnnotationAssertion( "PIRSF:PIRSF500778") +AnnotationAssertion(Annotation( "PIRSF:PIRSF500778") "paired box protein, PAX6-type") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000037798") +AnnotationAssertion(rdfs:comment "Category=family.") +AnnotationAssertion(rdfs:label "paired box protein PAX group IV") +SubClassOf( ) + # Class: (cathepsin-like protease) AnnotationAssertion(Annotation( "PRO:DAN") "A protein that is a translation product of some metazoan gene that encodes a signal peptide followed by a single Cathepsin propeptide inhibitor domain (Pfam:PF08246) followed by a single Papain family cysteine protease (Pfam:PF00112) domain at the C terminus.") @@ -122424,20 +122477,20 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -# Class: (protein-containing molecular entity) - -AnnotationAssertion(Annotation( "PRO:DAN") "A molecular entity that minimally consists of a protein.") -AnnotationAssertion(Annotation( "PRO:DAN") "protein") -AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") -AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") -AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") -AnnotationAssertion( "protein") -AnnotationAssertion( "PR:000064867") -AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050565).") -AnnotationAssertion(rdfs:label "protein-containing molecular entity") -EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) -SubClassOf( ) -SubClassOf( ObjectSomeValuesFrom( )) +# Class: (protein-containing material entity) + +AnnotationAssertion(Annotation( "PRO:DAN") "A material entity that minimally consists of a protein.") +AnnotationAssertion(Annotation( "PRO:DAN") "protein") +AnnotationAssertion(Annotation( "PRO:DAN") "protein aggregate") +AnnotationAssertion(Annotation( "PRO:DAN") "protein complex") +AnnotationAssertion(Annotation( "PRO:DAN") "protein-containing complex") +AnnotationAssertion( "protein") +AnnotationAssertion( "PR:000050567") +AnnotationAssertion(rdfs:comment "Note: This includes single proteins and derivatives thereof (PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566).") +AnnotationAssertion(rdfs:label "protein-containing material entity") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) # Class: (SCO-spondin (human)) @@ -122693,7 +122746,7 @@ SubClassOf( ObjectSomeValuesFrom( (natural killer cells antigen CD94 (mouse)) -AnnotationAssertion(Annotation( "OMA:O54707") Annotation( "PRO:DNx") "A killer cell lectin-like receptor subfamily D member 1 that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:O54707") Annotation( "PANTHER:PTHR22800:SF15") Annotation( "PRO:DNx") "A killer cell lectin-like receptor subfamily D member 1 that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:O54707") AnnotationAssertion(Annotation( "UniProtKB:O54707") "CD94 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:O54707") "killer cell lectin-like receptor subfamily D member 1 (mouse)") @@ -122794,7 +122847,7 @@ SubClassOf( ObjectSomeValuesFrom( (CD83 antigen (mouse)) -AnnotationAssertion(Annotation( "OMA:O88324") Annotation( "PRO:DNx") "A CD83 molecule that is encoded in the genome of mouse.") +AnnotationAssertion(Annotation( "OMA:O88324") Annotation( "PANTHER:PTHR15193:SF0") Annotation( "PRO:DNx") "A CD83 molecule that is encoded in the genome of mouse.") AnnotationAssertion( "UniProtKB:O88324") AnnotationAssertion(Annotation( "UniProtKB:O88324") "CD83 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCD83") @@ -122892,7 +122945,6 @@ SubClassOf( ObjectSomeValuesFrom( (eomesodermin homolog (human)) AnnotationAssertion(Annotation( "PRO:CNA") Annotation( "UniProtKB:O95936") "An eomesodermin that is encoded in the genome of human.") -AnnotationAssertion(Annotation(rdfs:label "PR:O95936 located_in GO:0005654") "Reactome:R-HSA-452232") AnnotationAssertion( "UniProtKB:O95936") AnnotationAssertion(Annotation( "UniProtKB:O95936") "T-box brain protein 2 (human)") AnnotationAssertion(Annotation( "UniProtKB:O95936") "T-brain-2 (human)") @@ -126541,6 +126593,25 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (paired box protein Pax-6 (human)) + +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( "UniProtKB:P26367") "A paired box protein Pax-6 that is encoded in the genome of human.") +AnnotationAssertion(Annotation(rdfs:label "PR:P26367 located_in GO:0005654") "Reactome:R-HSA-3009044") +AnnotationAssertion( "UniProtKB:P26367") +AnnotationAssertion(Annotation( "UniProtKB:P26367") "aniridia type II protein (human)") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hPAX6") +AnnotationAssertion(Annotation( "UniProtKB:P26367") "oculorhombin (human)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P26367") Annotation( ) "AN2") +AnnotationAssertion(Annotation( "UniProtKB:P26367") Annotation( ) "PAX6") +AnnotationAssertion( "PR:P26367") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "paired box protein Pax-6 (human)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (platelet-derived growth factor receptor alpha (mouse)) AnnotationAssertion(Annotation( "OMA:P26618") Annotation( "PRO:DNx") "An alpha-type platelet-derived growth factor receptor that is encoded in the genome of mouse.") @@ -126722,7 +126793,7 @@ AnnotationAssertion(Annotation( "ADP-ribosyl cyclase 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "ADPRC 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "T10 (human)") -AnnotationAssertion(Annotation( "UniProtKB:P28907") "cADPR hydrolase 1 (human)") +AnnotationAssertion(Annotation( "UniProtKB:P28907") "cADPr hydrolase 1 (human)") AnnotationAssertion(Annotation( "UniProtKB:P28907") "cyclic ADP-ribose hydrolase 1 (human)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "hCD38") AnnotationAssertion( "protein") @@ -128181,7 +128252,7 @@ AnnotationAssertion(Annotation( "UniProtKB:P56528") "CD38 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "I-19 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "NIM-R5 antigen (mouse)") -AnnotationAssertion(Annotation( "UniProtKB:P56528") "cADPR hydrolase 1 (mouse)") +AnnotationAssertion(Annotation( "UniProtKB:P56528") "cADPr hydrolase 1 (mouse)") AnnotationAssertion(Annotation( "UniProtKB:P56528") "cyclic ADP-ribose hydrolase 1 (mouse)") AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mCD38") AnnotationAssertion( "protein") @@ -128332,6 +128403,24 @@ SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (paired box protein Pax-6 (mouse)) + +AnnotationAssertion(Annotation( "OMA:P63015") Annotation( "PRO:DNx") "A paired box protein Pax-6 that is encoded in the genome of mouse.") +AnnotationAssertion( "UniProtKB:P63015") +AnnotationAssertion(Annotation( "PRO:DNx") Annotation( ) "mPAX6") +AnnotationAssertion(Annotation( "UniProtKB:P63015") "oculorhombin (mouse)") +AnnotationAssertion( "protein") +AnnotationAssertion(Annotation( "UniProtKB:P63015") Annotation( ) "Pax-6") +AnnotationAssertion(Annotation( "UniProtKB:P63015") Annotation( ) "Pax6") +AnnotationAssertion(Annotation( "UniProtKB:P63015") Annotation( ) "Sey") +AnnotationAssertion( "PR:P63015") +AnnotationAssertion(rdfs:comment "Category=organism-gene.") +AnnotationAssertion(rdfs:label "paired box protein Pax-6 (mouse)") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +SubClassOf( ) +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + # Class: (C-X-C chemokine receptor type 4 (mouse)) AnnotationAssertion(Annotation( "OMA:P70658") Annotation( "PRO:DNx") "A C-X-C chemokine receptor type 4 that is encoded in the genome of mouse.") @@ -179582,6 +179671,60 @@ EquivalentClasses( ObjectIntersec SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) +# Class: (hippocampal field) + +AnnotationAssertion(Annotation( "MGI:csmith") Annotation( "MP:0008262") "A part or parts of the hippocampus that have a particular function.") +AnnotationAssertion( "BAMS:HIP") +AnnotationAssertion( "BAMS:Hi/CA") +AnnotationAssertion( "EMAPA:32772") +AnnotationAssertion( "FMA:74041") +AnnotationAssertion( "MA:0002428") +AnnotationAssertion(Annotation( "FMA:74041") "hippocampus subdivision") +AnnotationAssertion(Annotation( "FMA:74041") "subdivision of hippocampus") +AnnotationAssertion( "uberon") +AnnotationAssertion(Annotation( "BAMS:HIP") "hippocampal region") +AnnotationAssertion(Annotation( "MA:0002428") "hippocampus region") +AnnotationAssertion( "UBERON:0003876") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hippocampal field") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) +SubClassOf( ObjectSomeValuesFrom( )) +DisjointClasses( ) + +# Class: (CA4 field of hippocampus) + +AnnotationAssertion(Annotation( "ncithesaurus:CA4_Field_of_the_Cornu_Ammonis") "The last of four regions in the cornu ammonis of the hippocampus and is also part of the hilus of the dentate gyrus. This area contains mostly mossy cells that receive inputs from the dentate gyrus and pyramidal cells in the CA3 region and also projects back to the dentate gyrus.") +AnnotationAssertion( "consider obsoleting. consider - CA3c, hilus") +AnnotationAssertion( "DHBA:10300") +AnnotationAssertion( "EFO:0002457") +AnnotationAssertion( "EMAPA:32771") +AnnotationAssertion( "FMA:75741") +AnnotationAssertion( "HBA:12895") +AnnotationAssertion( "MA:0000953") +AnnotationAssertion( "NCIT:C32249") +AnnotationAssertion( "PBA:10074") +AnnotationAssertion(Annotation( "ncithesaurus:CA4_Field_of_the_Cornu_Ammonis") "UMLS:C2328406") +AnnotationAssertion( "Wikipedia:Region_IV_of_hippocampus_proper") +AnnotationAssertion( "neuronames:181") +AnnotationAssertion( "CA4") +AnnotationAssertion( "CA4 field") +AnnotationAssertion( "CA4 field of Ammon's horn") +AnnotationAssertion( "CA4 field of cornu ammonis") +AnnotationAssertion( "hippocampus CA4") +AnnotationAssertion(Annotation( "FMA:75741") Annotation( "FMA:TA") Annotation( ) "regio IV cornus ammonis") +AnnotationAssertion(Annotation( "FMA:75741") Annotation( "FMA:TA") Annotation( ) "regio IV hippocampi proprii") +AnnotationAssertion( "region 4 of Ammon's horn") +AnnotationAssertion(Annotation( "FMA:75741") "region IV of ammon's horn") +AnnotationAssertion(Annotation( "FMA:75741") "region IV of hippocampus proper") +AnnotationAssertion( "uberon") +AnnotationAssertion( "UBERON:0003884") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "CA4 field of hippocampus") +SubClassOf( ) + # Class: (mesometrium) AnnotationAssertion(Annotation( "OBOL:automatic") "A mesentery that is part of a uterus [Automatically generated definition].") diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index 81c82878e..bb55b889a 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-10-18") + +Annotation(owl:versionInfo "2024-10-30") Declaration(Class()) Declaration(Class())