From 8424cde15cadeb001d40ade10954d659376ec07e Mon Sep 17 00:00:00 2001 From: David Osumi-Sutherland Date: Mon, 23 Sep 2024 14:11:59 +0100 Subject: [PATCH] Update cl-edit.owl (#2597) Fixing Tanycyte location --- src/ontology/cl-edit.owl | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index ebba90639..decb6a92a 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3162,6 +3162,7 @@ Declaration(Class(obo:UBERON_0001004)) Declaration(Class(obo:UBERON_0001335)) Declaration(Class(obo:UBERON_0001786)) Declaration(Class(obo:UBERON_0001881)) +Declaration(Class(obo:UBERON_0002197)) Declaration(Class(obo:UBERON_0002222)) Declaration(Class(obo:UBERON_0002339)) Declaration(Class(obo:UBERON_0002548)) @@ -14553,6 +14554,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002085 "FMA:54560") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29351662") oboInOwl:hasExactSynonym obo:CL_0002085 "stretch cell") AnnotationAssertion(rdfs:label obo:CL_0002085 "tanycyte") SubClassOf(obo:CL_0002085 obo:CL_0000683) +SubClassOf(obo:CL_0002085 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004670)) # Class: obo:CL_0002086 (specialized cardiac myocyte) @@ -32325,7 +32327,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29351662") oboInOwl:hasR AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:26578855") rdfs:comment obo:CL_4042018 "In rodents, this type of tanycyte is more developmentally advanced than alpha1 tanycytes, shows a high neurogenic competence and expresses the following markers DARPP-32, Vimentin, GPR50, Connexin-43, GLT-1, GLUT1(+) (Goodman and Hajihosseini 2015; Prevot et al., 2018)") AnnotationAssertion(rdfs:label obo:CL_4042018 "alpha2-tanycyte"@en) SubClassOf(obo:CL_4042018 obo:CL_0002085) -SubClassOf(obo:CL_4042018 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001932)) +SubClassOf(obo:CL_4042018 ObjectSomeValuesFrom(obo:RO_0002131 obo:UBERON_0001932)) SubClassOf(obo:CL_4042018 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000014419)) # Class: obo:CL_4042019 (beta1-tanycyte) @@ -32337,6 +32339,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29351662") oboInOwl:hasR AnnotationAssertion(rdfs:label obo:CL_4042019 "beta1-tanycyte"@en) SubClassOf(obo:CL_4042019 obo:CL_0002085) SubClassOf(obo:CL_4042019 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006250)) +SubClassOf(obo:CL_4042019 ObjectSomeValuesFrom(obo:RO_0002131 obo:UBERON_0002197)) +SubClassOf(obo:CL_4042019 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0032274)) SubClassOf(obo:CL_4042019 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000007479)) SubClassOf(obo:CL_4042019 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000007489)) @@ -32349,6 +32353,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:29351662") oboInOwl:hasR AnnotationAssertion(rdfs:label obo:CL_4042020 "beta2-tanycyte"@en) SubClassOf(obo:CL_4042020 obo:CL_0002085) SubClassOf(obo:CL_4042020 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0006250)) +SubClassOf(obo:CL_4042020 ObjectSomeValuesFrom(obo:RO_0002131 obo:UBERON_0002197)) SubClassOf(obo:CL_4042020 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000007479)) SubClassOf(obo:CL_4042020 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000007489)) @@ -32358,7 +32363,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10467245") obo:IAO_00001 AnnotationAssertion(terms:contributor obo:CL_4042021 ) AnnotationAssertion(terms:date obo:CL_4042021 "2024-09-02T11:42:12Z"^^xsd:dateTime) AnnotationAssertion(Annotation(oboInOwl:SynonymTypeProperty obo:OMO_0003000) Annotation(oboInOwl:hasDbXref "PMID:12429182") oboInOwl:hasRelatedSynonym obo:CL_4042021 "NRP") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:9354325") Annotation(oboInOwl:hasDbXref "PMID:12429182") rdfs:comment obo:CL_4042021 "In vitro cultures of embryonic mouse neural tubes show that neuronal-restricted precursors (NRPs) are derived from multipotent neuroepithelial cells to give rise to neurons. This progression suggests a linear relationship between multipotent progenitors and neuronal-restricted differentiation. (Mayer-Proschel et al., 1997). In the spinal cord of rats, neural-restricted precursor cells give rise cholinergic, GABAergic, glutametergic neurons (Cao and Howard et al., 2002).") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:12429182") Annotation(oboInOwl:hasDbXref "PMID:9354325") rdfs:comment obo:CL_4042021 "In vitro cultures of embryonic mouse neural tubes show that neuronal-restricted precursors (NRPs) are derived from multipotent neuroepithelial cells to give rise to neurons. This progression suggests a linear relationship between multipotent progenitors and neuronal-restricted differentiation. (Mayer-Proschel et al., 1997). In the spinal cord of rats, neural-restricted precursor cells give rise cholinergic, GABAergic, glutametergic neurons (Cao and Howard et al., 2002).") AnnotationAssertion(rdfs:label obo:CL_4042021 "neuronal-restricted precursor"@en) SubClassOf(obo:CL_4042021 obo:CL_0000123) SubClassOf(obo:CL_4042021 obo:CL_0011026)