diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 16968f70f..a6f805929 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-12-08") + +Annotation(owl:versionInfo "2024-01-02") Declaration(Class()) Declaration(Class()) @@ -12126,6 +12126,8 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -12188,7 +12190,6 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) -Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -12402,6 +12403,18 @@ AnnotationAssertion( "abbreviation") SubAnnotationPropertyOf( ) +# Annotation Property: (dubious synonym) + +AnnotationAssertion( "A synonym type for describing dubious synonyms") +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "2023-03-03"^^xsd:date) +AnnotationAssertion(rdfs:label "dubious synonym") + +# Annotation Property: () + +SubAnnotationPropertyOf( ) + # Annotation Property: (plural form) AnnotationAssertion( "CHEBI:23367 (molecular entity) has an exact synonym (molecular entities), which is of the type OMO:0003004 (plural form)") @@ -12699,10 +12712,6 @@ SubAnnotationPropertyOf( < SubAnnotationPropertyOf( ) -# Annotation Property: () - -SubAnnotationPropertyOf( ) - # Annotation Property: () SubAnnotationPropertyOf( ) @@ -137977,7 +137986,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Mongolian gerbil") -AnnotationAssertion(Annotation( ) "Mongolian jird") +AnnotationAssertion(Annotation( ) "Mongolian jird") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:10047") AnnotationAssertion(rdfs:label "Meriones unguiculatus") @@ -137998,8 +138007,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Mus") -AnnotationAssertion(Annotation( ) "mice") -AnnotationAssertion(Annotation( ) "mouse") +AnnotationAssertion(Annotation( ) "mice") +AnnotationAssertion(Annotation( ) "mouse") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:10088") AnnotationAssertion(rdfs:label "Mus ") @@ -138012,7 +138021,7 @@ AnnotationAssertion( "NCBITaxon:85055") AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "house mouse") -AnnotationAssertion(Annotation( ) "mouse") +AnnotationAssertion(Annotation( ) "mouse") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:10090") AnnotationAssertion(rdfs:label "Mus musculus") @@ -138022,8 +138031,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "rat") -AnnotationAssertion(Annotation( ) "rats") +AnnotationAssertion(Annotation( ) "rat") +AnnotationAssertion(Annotation( ) "rats") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:10114") AnnotationAssertion(rdfs:label "Rattus") @@ -138035,9 +138044,9 @@ AnnotationAssertion( "NCBITaxon:36465") AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Norway rat") -AnnotationAssertion(Annotation( ) "brown rat") -AnnotationAssertion(Annotation( ) "rat") -AnnotationAssertion(Annotation( ) "rats") +AnnotationAssertion(Annotation( ) "brown rat") +AnnotationAssertion(Annotation( ) "rat") +AnnotationAssertion(Annotation( ) "rats") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Mus norvegicus") AnnotationAssertion( "NCBITaxon:10116") @@ -138167,8 +138176,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "fish") -AnnotationAssertion(Annotation( ) "fishes") +AnnotationAssertion(Annotation( ) "fish") +AnnotationAssertion(Annotation( ) "fishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Agnatha") AnnotationAssertion(Annotation( ) "Hyperotreti") @@ -138181,8 +138190,8 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "fish") -AnnotationAssertion(Annotation( ) "fishes") +AnnotationAssertion(Annotation( ) "fish") +AnnotationAssertion(Annotation( ) "fishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Agnatha") AnnotationAssertion(Annotation( ) "Cephalaspidomorphi") @@ -138238,9 +138247,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "fish") -AnnotationAssertion(Annotation( ) "fishes") -AnnotationAssertion(Annotation( ) "lobe-finned fishes") +AnnotationAssertion(Annotation( ) "fish") +AnnotationAssertion(Annotation( ) "fishes") +AnnotationAssertion(Annotation( ) "lobe-finned fishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Actinistia") AnnotationAssertion(Annotation( ) "Choanichthyes") @@ -138414,7 +138423,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "gamophytes") +AnnotationAssertion(Annotation( ) "gamophytes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Conjugatophyceae") AnnotationAssertion(Annotation( ) "Gamophyceae") @@ -138936,7 +138945,7 @@ AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "PMID:11557979") AnnotationAssertion( "PMID:9727836") -AnnotationAssertion(Annotation( ) "mandibulates") +AnnotationAssertion(Annotation( ) "mandibulates") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:197563") AnnotationAssertion(rdfs:label "Mandibulata") @@ -139252,7 +139261,7 @@ AnnotationAssertion( "PMID:23020233") AnnotationAssertion( "PMID:30257078") AnnotationAssertion(Annotation( ) "eucaryotes") -AnnotationAssertion(Annotation( ) "eukaryotes") +AnnotationAssertion(Annotation( ) "eukaryotes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Eucarya") AnnotationAssertion(Annotation( ) "Eucaryotae") @@ -139453,7 +139462,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "puffer fishes") +AnnotationAssertion(Annotation( ) "puffer fishes") AnnotationAssertion(Annotation( ) "puffers") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:31031") @@ -139474,7 +139483,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "tiger puffer") +AnnotationAssertion(Annotation( ) "tiger puffer") AnnotationAssertion(Annotation( ) "torafugu") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Fugu rubripes") @@ -139575,7 +139584,7 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "ape") +AnnotationAssertion(Annotation( ) "ape") AnnotationAssertion(Annotation( ) "apes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:314295") @@ -139595,9 +139604,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "higher plants") -AnnotationAssertion(Annotation( ) "land plants") -AnnotationAssertion(Annotation( ) "plants") +AnnotationAssertion(Annotation( ) "higher plants") +AnnotationAssertion(Annotation( ) "land plants") +AnnotationAssertion(Annotation( ) "plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "land plants") AnnotationAssertion( "NCBITaxon:3193") @@ -139766,7 +139775,7 @@ AnnotationAssertion( "PMID:30257078") AnnotationAssertion(Annotation( ) "Chlorophyta/Embryophyta group") AnnotationAssertion(Annotation( ) "chlorophyte/embryophyte group") -AnnotationAssertion(Annotation( ) "green plants") +AnnotationAssertion(Annotation( ) "green plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Chlorobionta") AnnotationAssertion(Annotation( ) "Chloroplastida") @@ -139807,7 +139816,7 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "metazoans") -AnnotationAssertion(Annotation( ) "multicellular animals") +AnnotationAssertion(Annotation( ) "multicellular animals") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Animalia") AnnotationAssertion(Annotation( ) "animals") @@ -139859,7 +139868,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "deuterostomes") +AnnotationAssertion(Annotation( ) "deuterostomes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:33511") AnnotationAssertion(rdfs:label "Deuterostomia") @@ -139957,7 +139966,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "PMID:25249442") -AnnotationAssertion(Annotation( ) "angiosperms") +AnnotationAssertion(Annotation( ) "angiosperms") AnnotationAssertion(Annotation( ) "flowering plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Angiospermae") @@ -139991,7 +140000,7 @@ SubClassOf( ) AnnotationAssertion( "NCBITaxon:8521") AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "scincomorph lizards") +AnnotationAssertion(Annotation( ) "scincomorph lizards") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Lacertilia") AnnotationAssertion(Annotation( ) "Scincomorpha") @@ -140148,7 +140157,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "glaucocystophytes") +AnnotationAssertion(Annotation( ) "glaucocystophytes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Glaucophyceae") AnnotationAssertion(Annotation( ) "Glaucophyta") @@ -140302,8 +140311,8 @@ AnnotationAssertion( "NCBITaxon:55678") AnnotationAssertion( "NCBITaxon:6422") AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "pogonophores") -AnnotationAssertion(Annotation( ) "vestimentiferans") +AnnotationAssertion(Annotation( ) "pogonophores") +AnnotationAssertion(Annotation( ) "vestimentiferans") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Frenulata") AnnotationAssertion(Annotation( ) "Lamellibrachiidae") @@ -140335,7 +140344,7 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Common warthog") -AnnotationAssertion(Annotation( ) "warthog") +AnnotationAssertion(Annotation( ) "warthog") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:41426") AnnotationAssertion(rdfs:label "Phacochoerus africanus") @@ -140384,9 +140393,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "entoprocts") +AnnotationAssertion(Annotation( ) "entoprocts") AnnotationAssertion(Annotation( ) "goblet worms") -AnnotationAssertion(Annotation( ) "nodding heads") +AnnotationAssertion(Annotation( ) "nodding heads") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Endoprocta") AnnotationAssertion(Annotation( ) "Kamptozoa") @@ -140413,8 +140422,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "dinosaur") -AnnotationAssertion(Annotation( ) "dinosaurs") +AnnotationAssertion(Annotation( ) "dinosaur") +AnnotationAssertion(Annotation( ) "dinosaurs") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:436486") AnnotationAssertion(rdfs:label "Dinosauria") @@ -140609,7 +140618,7 @@ AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "PMID:17572334") AnnotationAssertion(Annotation( ) "ascomycetes") -AnnotationAssertion(Annotation( ) "sac fungi") +AnnotationAssertion(Annotation( ) "sac fungi") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "ascomycete fungi") AnnotationAssertion( "NCBITaxon:4890") @@ -140694,14 +140703,16 @@ SubClassOf( (Saccharomyces cerevisiae) AnnotationAssertion( ) +AnnotationAssertion( "NCBITaxon:41870") AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "S. cerevisiae") -AnnotationAssertion(Annotation( ) "baker's yeast") -AnnotationAssertion(Annotation( ) "brewer's yeast") +AnnotationAssertion(Annotation( ) "Saccharomyces cerevisiae 'var. diastaticus'") +AnnotationAssertion(Annotation( ) "baker's yeast") +AnnotationAssertion(Annotation( ) "brewer's yeast") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Candida robusta") AnnotationAssertion(Annotation( ) "Mycoderma cerevisiae") AnnotationAssertion(Annotation( ) "Saccharomyces capensis") +AnnotationAssertion(Annotation( ) "Saccharomyces diastaticus") AnnotationAssertion(Annotation( ) "Saccharomyces italicus") AnnotationAssertion(Annotation( ) "Saccharomyces oviformis") AnnotationAssertion(Annotation( ) "Saccharomyces uvarum var. melibiosus") @@ -140785,7 +140796,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "vascular plants") +AnnotationAssertion(Annotation( ) "vascular plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "vascular plants") AnnotationAssertion( "NCBITaxon:58023") @@ -140796,7 +140807,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "seed plants") +AnnotationAssertion(Annotation( ) "seed plants") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "seed plants") AnnotationAssertion( "NCBITaxon:58024") @@ -140830,7 +140841,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "cnidarians") -AnnotationAssertion(Annotation( ) "coelenterates") +AnnotationAssertion(Annotation( ) "coelenterates") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Coelenterata") AnnotationAssertion(Annotation( ) "cnidarians") @@ -140851,7 +140862,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "flatworm") +AnnotationAssertion(Annotation( ) "flatworm") AnnotationAssertion(Annotation( ) "flatworms") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "flatworms") @@ -140938,8 +140949,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "bootlace worms") -AnnotationAssertion(Annotation( ) "nemertines") +AnnotationAssertion(Annotation( ) "bootlace worms") +AnnotationAssertion(Annotation( ) "nemertines") AnnotationAssertion(Annotation( ) "ribbon worms") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Nemertini") @@ -140955,9 +140966,9 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "nematode") -AnnotationAssertion(Annotation( ) "nematodes") -AnnotationAssertion(Annotation( ) "roundworm") +AnnotationAssertion(Annotation( ) "nematode") +AnnotationAssertion(Annotation( ) "nematodes") +AnnotationAssertion(Annotation( ) "roundworm") AnnotationAssertion(Annotation( ) "roundworms") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Nemata") @@ -140971,8 +140982,10 @@ DisjointClasses( ) AnnotationAssertion( "NCBITaxon:33251") +AnnotationAssertion( "NCBITaxon:6308") AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion(Annotation( ) "Strongylida") AnnotationAssertion( "NCBITaxon:6236") AnnotationAssertion(rdfs:label "Rhabditida") SubClassOf( ) @@ -141011,9 +141024,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Neandertal") -AnnotationAssertion(Annotation( ) "Neandertal man") -AnnotationAssertion(Annotation( ) "Neanderthal") -AnnotationAssertion(Annotation( ) "Neanderthal man") +AnnotationAssertion(Annotation( ) "Neandertal man") +AnnotationAssertion(Annotation( ) "Neanderthal") +AnnotationAssertion(Annotation( ) "Neanderthal man") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Homo neanderthalensis") AnnotationAssertion( "NCBITaxon:63221") @@ -141065,7 +141078,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "molluscs") +AnnotationAssertion(Annotation( ) "molluscs") AnnotationAssertion(Annotation( ) "mollusks") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "molluscs") @@ -141159,7 +141172,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "chelicerates") +AnnotationAssertion(Annotation( ) "chelicerates") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:6843") AnnotationAssertion(rdfs:label "Chelicerata") @@ -141194,7 +141207,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "butterflies and moths") -AnnotationAssertion(Annotation( ) "moths") +AnnotationAssertion(Annotation( ) "moths") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "moths") AnnotationAssertion( "NCBITaxon:7088") @@ -141259,7 +141272,7 @@ AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Drosophila") AnnotationAssertion(Annotation( ) "fruit flies") -AnnotationAssertion(Annotation( ) "fruit fly") +AnnotationAssertion(Annotation( ) "fruit fly") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:7215") AnnotationAssertion(rdfs:label "Drosophila ") @@ -141284,7 +141297,7 @@ AnnotationAssertion( "NCBITaxon:27527") AnnotationAssertion( "NCBITaxon:27531") AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "hymenopterans") +AnnotationAssertion(Annotation( ) "hymenopterans") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "hymenopterans") AnnotationAssertion( "NCBITaxon:7399") @@ -141328,7 +141341,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "brachiopods") +AnnotationAssertion(Annotation( ) "brachiopods") AnnotationAssertion(Annotation( ) "lampshells") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Lophophorata") @@ -141363,8 +141376,8 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "sea stars") -AnnotationAssertion(Annotation( ) "starfish") +AnnotationAssertion(Annotation( ) "sea stars") +AnnotationAssertion(Annotation( ) "starfish") AnnotationAssertion(Annotation( ) "starfishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "starfish") @@ -141385,7 +141398,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "sea urchin") +AnnotationAssertion(Annotation( ) "sea urchin") AnnotationAssertion(Annotation( ) "sea urchins") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "sea urchins") @@ -141472,8 +141485,8 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "amphioxi") -AnnotationAssertion(Annotation( ) "amphioxius") +AnnotationAssertion(Annotation( ) "amphioxi") +AnnotationAssertion(Annotation( ) "amphioxius") AnnotationAssertion(Annotation( ) "lancelets") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Branchiostomidae") @@ -141572,8 +141585,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Atlantic hagfish") -AnnotationAssertion(Annotation( ) "common hagfish") -AnnotationAssertion(Annotation( ) "hagfish") +AnnotationAssertion(Annotation( ) "common hagfish") +AnnotationAssertion(Annotation( ) "hagfish") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:7769") AnnotationAssertion(rdfs:label "Myxine glutinosa") @@ -141595,8 +141608,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "cartilaginous fishes") -AnnotationAssertion(Annotation( ) "fish") -AnnotationAssertion(Annotation( ) "fishes") +AnnotationAssertion(Annotation( ) "fish") +AnnotationAssertion(Annotation( ) "fishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "cartilaginous fishes") AnnotationAssertion( "NCBITaxon:7777") @@ -141660,9 +141673,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "dipnoans") -AnnotationAssertion(Annotation( ) "fish") -AnnotationAssertion(Annotation( ) "fishes") +AnnotationAssertion(Annotation( ) "dipnoans") +AnnotationAssertion(Annotation( ) "fish") +AnnotationAssertion(Annotation( ) "fishes") AnnotationAssertion(Annotation( ) "lungfishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Choanichthyes") @@ -141678,7 +141691,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "lobe-finned fishes") +AnnotationAssertion(Annotation( ) "lobe-finned fishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Osteichthyes") AnnotationAssertion(Annotation( ) "coelacanths") @@ -141709,8 +141722,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "fish") -AnnotationAssertion(Annotation( ) "fishes") +AnnotationAssertion(Annotation( ) "fish") +AnnotationAssertion(Annotation( ) "fishes") AnnotationAssertion(Annotation( ) "ray-finned fishes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Actinopterygi") @@ -141841,9 +141854,9 @@ AnnotationAssertion( "NCBITaxon:27702") AnnotationAssertion( "NCBITaxon:37966") AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "leopard danio") -AnnotationAssertion(Annotation( ) "zebra danio") -AnnotationAssertion(Annotation( ) "zebra fish") +AnnotationAssertion(Annotation( ) "leopard danio") +AnnotationAssertion(Annotation( ) "zebra danio") +AnnotationAssertion(Annotation( ) "zebra fish") AnnotationAssertion(Annotation( ) "zebrafish") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Brachydanio rerio") @@ -142005,7 +142018,7 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "big salamanders") +AnnotationAssertion(Annotation( ) "big salamanders") AnnotationAssertion(Annotation( ) "mole salamanders") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:8295") @@ -142037,8 +142050,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "anurans") -AnnotationAssertion(Annotation( ) "frogs") +AnnotationAssertion(Annotation( ) "anurans") +AnnotationAssertion(Annotation( ) "frogs") AnnotationAssertion(Annotation( ) "frogs and toads") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Salientia") @@ -142052,7 +142065,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "PMID:2385174") -AnnotationAssertion(Annotation( ) "pipid frogs") +AnnotationAssertion(Annotation( ) "pipid frogs") AnnotationAssertion(Annotation( ) "tongueless frogs") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:8352") @@ -142075,9 +142088,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "African clawed frog") -AnnotationAssertion(Annotation( ) "clawed frog") -AnnotationAssertion(Annotation( ) "common platanna") -AnnotationAssertion(Annotation( ) "platanna") +AnnotationAssertion(Annotation( ) "clawed frog") +AnnotationAssertion(Annotation( ) "common platanna") +AnnotationAssertion(Annotation( ) "platanna") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Bufo laevis") AnnotationAssertion( "NCBITaxon:8355") @@ -142134,7 +142147,7 @@ AnnotationAssertion( "GC_ID:1") AnnotationAssertion( "PMID:22839753") AnnotationAssertion( "PMID:25450099") -AnnotationAssertion(Annotation( ) "anapsid reptiles") +AnnotationAssertion(Annotation( ) "anapsid reptiles") AnnotationAssertion(Annotation( ) "turtles") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Anapsida") @@ -142190,7 +142203,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "common caiman") +AnnotationAssertion(Annotation( ) "common caiman") AnnotationAssertion(Annotation( ) "spectacled caiman") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Caiman sclerops") @@ -142218,7 +142231,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "beaked reptiles") -AnnotationAssertion(Annotation( ) "rhynchocephalians") +AnnotationAssertion(Annotation( ) "rhynchocephalians") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Rhynchocephalia") AnnotationAssertion(Annotation( ) "Rhynchosauria") @@ -142249,7 +142262,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "hatteria") +AnnotationAssertion(Annotation( ) "hatteria") AnnotationAssertion(Annotation( ) "tuatara") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Hatteria punctata") @@ -142413,7 +142426,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "African ostrich") -AnnotationAssertion(Annotation( ) "ostrich") +AnnotationAssertion(Annotation( ) "ostrich") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Struthio camelus domesticus") AnnotationAssertion( "NCBITaxon:8801") @@ -142525,9 +142538,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Gallus domesticus") -AnnotationAssertion(Annotation( ) "bantam") +AnnotationAssertion(Annotation( ) "bantam") AnnotationAssertion(Annotation( ) "chicken") -AnnotationAssertion(Annotation( ) "chickens") +AnnotationAssertion(Annotation( ) "chickens") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Gallus gallus domesticus") AnnotationAssertion(Annotation( ) "Phasianus gallus") @@ -142613,8 +142626,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "duck-billed platypus") -AnnotationAssertion(Annotation( ) "duckbill platypus") +AnnotationAssertion(Annotation( ) "duck-billed platypus") +AnnotationAssertion(Annotation( ) "duckbill platypus") AnnotationAssertion(Annotation( ) "platypus") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Platypus anatinus") @@ -142647,7 +142660,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Australian echidna") -AnnotationAssertion(Annotation( ) "short-beaked echidna") +AnnotationAssertion(Annotation( ) "short-beaked echidna") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Myrmecophaga aculeata") AnnotationAssertion( "NCBITaxon:9261") @@ -142671,7 +142684,7 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "American opossums") +AnnotationAssertion(Annotation( ) "American opossums") AnnotationAssertion(Annotation( ) "opossums") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9265") @@ -142746,8 +142759,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "eutherian mammals") -AnnotationAssertion(Annotation( ) "placental mammals") +AnnotationAssertion(Annotation( ) "eutherian mammals") +AnnotationAssertion(Annotation( ) "placental mammals") AnnotationAssertion(Annotation( ) "placentals") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Placentalia") @@ -142772,7 +142785,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "armadillo") +AnnotationAssertion(Annotation( ) "armadillo") AnnotationAssertion(Annotation( ) "armadillos") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9359") @@ -142820,8 +142833,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "European hedgehog") -AnnotationAssertion(Annotation( ) "common hedgehog") +AnnotationAssertion(Annotation( ) "European hedgehog") +AnnotationAssertion(Annotation( ) "common hedgehog") AnnotationAssertion(Annotation( ) "western European hedgehog") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9365") @@ -142891,7 +142904,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "bushbabies") +AnnotationAssertion(Annotation( ) "bushbabies") AnnotationAssertion(Annotation( ) "lorises") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Loridae") @@ -142914,8 +142927,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "New World monkeys") -AnnotationAssertion(Annotation( ) "monkey") -AnnotationAssertion(Annotation( ) "monkeys") +AnnotationAssertion(Annotation( ) "monkey") +AnnotationAssertion(Annotation( ) "monkeys") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9479") AnnotationAssertion(rdfs:label "Platyrrhini") @@ -142965,8 +142978,8 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "Old World monkeys") -AnnotationAssertion(Annotation( ) "monkey") -AnnotationAssertion(Annotation( ) "monkeys") +AnnotationAssertion(Annotation( ) "monkey") +AnnotationAssertion(Annotation( ) "monkeys") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9527") AnnotationAssertion(rdfs:label "Cercopithecidae") @@ -142985,7 +142998,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "macaque") +AnnotationAssertion(Annotation( ) "macaque") AnnotationAssertion(Annotation( ) "macaques") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9539") @@ -142997,7 +143010,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "gibbons") -AnnotationAssertion(Annotation( ) "lesser apes") +AnnotationAssertion(Annotation( ) "lesser apes") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9577") AnnotationAssertion(rdfs:label "Hylobatidae") @@ -143053,7 +143066,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "humans") +AnnotationAssertion(Annotation( ) "humans") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9605") AnnotationAssertion(rdfs:label "Homo") @@ -143136,9 +143149,9 @@ SubClassOf( ) AnnotationAssertion( "NCBITaxon:77150") AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "black ferret") +AnnotationAssertion(Annotation( ) "black ferret") AnnotationAssertion(Annotation( ) "domestic ferret") -AnnotationAssertion(Annotation( ) "ferret") +AnnotationAssertion(Annotation( ) "ferret") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "Mustela furo") AnnotationAssertion( "NCBITaxon:9669") @@ -143181,10 +143194,10 @@ DisjointClasses( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "crawling seals") -AnnotationAssertion(Annotation( ) "earless seals") -AnnotationAssertion(Annotation( ) "seal") -AnnotationAssertion(Annotation( ) "seals") +AnnotationAssertion(Annotation( ) "crawling seals") +AnnotationAssertion(Annotation( ) "earless seals") +AnnotationAssertion(Annotation( ) "seal") +AnnotationAssertion(Annotation( ) "seals") AnnotationAssertion(Annotation( ) "true seals") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9709") @@ -143195,10 +143208,10 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "cetaceans") -AnnotationAssertion(Annotation( ) "whale") +AnnotationAssertion(Annotation( ) "cetaceans") +AnnotationAssertion(Annotation( ) "whale") AnnotationAssertion(Annotation( ) "whales") -AnnotationAssertion(Annotation( ) "whales, dolphins, and porpoises") +AnnotationAssertion(Annotation( ) "whales, dolphins, and porpoises") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "whales & dolphins") AnnotationAssertion( "NCBITaxon:9721") @@ -143259,7 +143272,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "finback whales") +AnnotationAssertion(Annotation( ) "finback whales") AnnotationAssertion(Annotation( ) "rorquals") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9765") @@ -143348,7 +143361,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "aardvark") -AnnotationAssertion(Annotation( ) "aardvarks") +AnnotationAssertion(Annotation( ) "aardvarks") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9816") AnnotationAssertion(rdfs:label "Orycteropodidae") @@ -143359,7 +143372,7 @@ SubClassOf( ) AnnotationAssertion( "NCBITaxon:39423") AnnotationAssertion( "GC_ID:1") -AnnotationAssertion(Annotation( ) "boars") +AnnotationAssertion(Annotation( ) "boars") AnnotationAssertion(Annotation( ) "pigs") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9821") @@ -143380,9 +143393,9 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "pig") -AnnotationAssertion(Annotation( ) "pigs") -AnnotationAssertion(Annotation( ) "swine") -AnnotationAssertion(Annotation( ) "wild boar") +AnnotationAssertion(Annotation( ) "pigs") +AnnotationAssertion(Annotation( ) "swine") +AnnotationAssertion(Annotation( ) "wild boar") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9823") AnnotationAssertion(rdfs:label "Sus scrofa") @@ -143490,7 +143503,7 @@ SubClassOf( ) AnnotationAssertion( "GC_ID:1") AnnotationAssertion(Annotation( ) "pangolins") -AnnotationAssertion(Annotation( ) "scaly anteaters") +AnnotationAssertion(Annotation( ) "scaly anteaters") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9972") AnnotationAssertion(rdfs:label "Manidae") diff --git a/src/ontology/imports/omo_terms.txt b/src/ontology/imports/omo_terms.txt index fd2218045..e3c1145e6 100644 --- a/src/ontology/imports/omo_terms.txt +++ b/src/ontology/imports/omo_terms.txt @@ -1,5 +1,4 @@ +OMO:0003002 OMO:0003004 OMO:0003000 OMO:0003011 - - diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index 26c6bac5e..6cc7f393b 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -31,7 +31,6 @@ synonymtypedef: BRAIN_NAME_ABV "brain name abbreviations (drosophila)" synonymtypedef: COMPARATIVE_PREFERRED "preferred term in the context of comparative anatomy" synonymtypedef: DEPRECATED "A historic synonym, no longer encouraged" synonymtypedef: DEVELOPMENTAL "developmental term" -synonymtypedef: DUBIOUS "dubious or contested synonym" synonymtypedef: HOMOLOGY "a synonym made on the basis of a possibly homologous structure in another species" synonymtypedef: HUMAN_PREFERRED "preferred term when talking about an instance of this class in Homo sapiens" synonymtypedef: INCONSISTENT "indicates that a synonym is used in an inconsistent or confusing way, typically between species" @@ -39,6 +38,7 @@ synonymtypedef: MISSPELLING "a mis-spelling that is in common use and thus recor synonymtypedef: NON_AMNIOTE "synonym that is inappropriate for amniotes" synonymtypedef: NON_MAMMAL "synonym that is inappropriate for mammals" synonymtypedef: OMO:0003000 "abbreviation" +synonymtypedef: OMO:0003002 "dubious synonym" synonymtypedef: OMO:0003004 "plural form" synonymtypedef: OMO:0003011 "latin term" synonymtypedef: PENDING_REVIEW "expert consultation and attribution required" @@ -12443,8 +12443,8 @@ comment: EDITOR_NOTE TODO - add distinct classes for hemal vs neural? subset: vertebrate_core synonym: "cranial articular process of vertebra" EXACT [] synonym: "neural prezygapophyses" RELATED OMO:0003004 [TAO:0001325] -synonym: "neural prezygapophysis" NARROW DUBIOUS [ZFA:0001325] -synonym: "neural prezygopophyses" NARROW DUBIOUS [ZFA:0001325] +synonym: "neural prezygapophysis" NARROW OMO:0003002 [ZFA:0001325] +synonym: "neural prezygopophyses" NARROW OMO:0003002 [ZFA:0001325] synonym: "prezygapophysis" EXACT [] synonym: "processus articularis superior" EXACT [] synonym: "processus articularis superior vertebrae" EXACT OMO:0003011 [FMA:11953, FMA:TA] @@ -12472,7 +12472,7 @@ subset: vertebrate_core synonym: "caudal articular process of vertebra" EXACT [] synonym: "inferior articular process of vertebra" EXACT HUMAN_PREFERRED [FMA:11954] synonym: "neural postzygapophyses" RELATED OMO:0003004 [TAO:0000681] -synonym: "neural postzygapophysis" NARROW DUBIOUS [ZFA:0000681] +synonym: "neural postzygapophysis" NARROW OMO:0003002 [ZFA:0000681] synonym: "neural postzygopophyses" RELATED [TAO:0000681] synonym: "neural postzygopophysis" EXACT [ZFA:0000681] synonym: "postzygapophysis" EXACT [] @@ -36168,7 +36168,7 @@ synonym: "nucleus tuberomamillaris hypothalami" RELATED OMO:0003011 [NeuroNames: synonym: "TM" BROAD OMO:0003000 [BIRNLEX:1271, NIFSTD:NeuroNames_abbrevSource] synonym: "TM" RELATED OMO:0003000 [BIRNLEX:1271] synonym: "tubero-mamillary area" RELATED [NeuroNames:427] -synonym: "tuberomamillary nucleus" RELATED DUBIOUS [EV:0100237] +synonym: "tuberomamillary nucleus" RELATED OMO:0003002 [EV:0100237] synonym: "tuberomammillary hypothalamic nucleus" EXACT [BIRNLEX:1271] synonym: "tuberomammillary nucleus" EXACT [BIRNLEX:1271] synonym: "tuberomammillary nucleus, ventral part" RELATED [NeuroNames:427] @@ -57426,7 +57426,7 @@ name: cuneiform nucleus synonym: "area parabigeminalis (Mai)" RELATED OMO:0003011 [NeuroNames:502] synonym: "CnF" BROAD OMO:0003000 [BIRNLEX:1430, NIFSTD:NeuroNames_abbrevSource] synonym: "cuneiform nucleus (Castaldi)" RELATED [NeuroNames:502] -synonym: "cunieform nucleus" EXACT DUBIOUS [FMA:231327] +synonym: "cunieform nucleus" EXACT OMO:0003002 [FMA:231327] synonym: "nucleus cuneiformis" RELATED OMO:0003011 [NeuroNames:502] synonym: "parabigeminal area (mai)" EXACT [] xref: BAMS:CnF @@ -62615,7 +62615,7 @@ relationship: part_of UBERON:0001723 {gci_relation="part_of", gci_filler="NCBITa id: UBERON:0002928 name: dentate gyrus polymorphic layer def: "A cellular layer of the dentate gyrus enclosed by the granule cell layer. A number of cell types are located in the polymorphic layer but the most prominent is the mossy cell." [http://orcid.org/0000-0002-6601-2165, PMCID:PMC2492885] -synonym: "CA4" RELATED DUBIOUS [PMID:17765709] +synonym: "CA4" RELATED OMO:0003002 [PMID:17765709] synonym: "polymorph layer of the dentate gyrus" RELATED [BAMS:PoDG] xref: BAMS:po xref: BAMS:PoDG @@ -65220,7 +65220,7 @@ synonym: "griseum centrale mesencephali" RELATED OMO:0003011 [NeuroNames:510] synonym: "griseum periventriculare mesencephali" RELATED OMO:0003011 [NeuroNames:510] synonym: "midbrain periaqueductal grey" EXACT [MA:0000209] synonym: "pAG" RELATED [NeuroNames:510] -synonym: "periaquectuctal grey" RELATED DUBIOUS [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, MA:0002895] +synonym: "periaquectuctal grey" RELATED OMO:0003002 [https://sourceforge.net/tracker/?func=detail&aid=3209233&group_id=76834&atid=1205376, MA:0002895] synonym: "periaqueductal gray" EXACT [FMA:74510] synonym: "periaqueductal gray matter" EXACT [FMA:74510] synonym: "periaqueductal gray of tegmentum" EXACT [FMA:74510] @@ -86323,7 +86323,7 @@ synonym: "Bowman's layer" EXACT [FMA:58273] synonym: "Bowman's membrane" EXACT [FMA:58273] synonym: "lamina limitans anterior (cornea)" EXACT [FMA:58273] synonym: "lamina limitans anterior corneae" EXACT OMO:0003011 [FMA:58273, FMA:TA] -synonym: "Reichert's membrane" RELATED DUBIOUS [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957] +synonym: "Reichert's membrane" RELATED OMO:0003002 [http://sourceforge.net/tracker/?func=detail&aid=2956371&group_id=76834&atid=974957] xref: FMA:58273 xref: MA:0001240 xref: NCIT:C32226 @@ -108764,7 +108764,7 @@ name: anterior transverse temporal area 41 alt_id: UBERON:0013574 def: "A subdivision of the cytoarchitecturally defined temporal region of cerebral cortex. It occupies the anterior transverse temporal gyrus (H) in the bank of the lateral sulcus on the dorsal surface of the temporal lobe. Cytoarchitecturally it is bounded medially by the parainsular area 52 (H) and laterally by the posterior transverse temporal area 42 (H) (Brodmann-1909). Adapted from Brain Info." [BIRNLEX:1582] synonym: "anterior transverse temporal area 41" EXACT [FMA:68638] -synonym: "anterior transverse termporal area 41" EXACT DUBIOUS [BIRNLEX:1582] +synonym: "anterior transverse termporal area 41" EXACT OMO:0003002 [BIRNLEX:1582] synonym: "area 41 of Brodmann" EXACT [BIRNLEX:1582, FMA:68638] synonym: "area 41 of Brodmann-1909" EXACT [BIRNLEX:1774] synonym: "area temporalis transversa anterior" EXACT [BIRNLEX:1774] @@ -108801,7 +108801,7 @@ synonym: "Brodmann area 42" EXACT [FMA:68639] synonym: "Brodmann area 42, posterior transverse temporal" EXACT [BIRNLEX:1775] synonym: "Brodmann's area 42" EXACT [BIRNLEX:1589] synonym: "posterior transverse temporal area 42" EXACT [FMA:68639] -synonym: "posterior transverse termporal area 42" EXACT DUBIOUS [BIRNLEX:1589] +synonym: "posterior transverse termporal area 42" EXACT OMO:0003002 [BIRNLEX:1589] xref: BIRNLEX:1589 xref: BIRNLEX:1775 xref: FMA:236867 @@ -109740,8 +109740,8 @@ relationship: part_of UBERON:0001757 ! pinna id: UBERON:0006204 name: inguinal ligament def: "A band running from the pubic tubercle to the anterior superior iliac spine. Its anatomy is very important for operating on hernia patients. It forms the base of the inguinal canal through which an indirect inguinal hernia may develop. The inguinal ligament runs from the anterior superior iliac spine of the ilium to the pubic tubercle of the pubic bone. It is formed by the external abdominal oblique aponeurosis and is continuous with the fascia lata of the thigh." [Wikipedia:Inguinal_ligament] -synonym: "fallopian ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament] -synonym: "Poupart's ligament" EXACT DUBIOUS [FMA:19855, Wikipedia:Inguinal_ligament] +synonym: "fallopian ligament" EXACT OMO:0003002 [FMA:19855, Wikipedia:Inguinal_ligament] +synonym: "Poupart's ligament" EXACT OMO:0003002 [FMA:19855, Wikipedia:Inguinal_ligament] synonym: "Vesalius' ligament" EXACT [FMA:19855] xref: FMA:19855 xref: SCTID:361900000 @@ -169582,7 +169582,7 @@ def: "The zone of the skin that surrounds a lip and is colored red due to thin e synonym: "vermilion border" BROAD [] synonym: "vermilion border of lip" EXACT [] synonym: "vermilion of lip" EXACT [] -synonym: "vermillion" RELATED DUBIOUS [] +synonym: "vermillion" RELATED OMO:0003002 [] xref: FMA:59824 xref: SCTID:362086008 intersection_of: UBERON:0000014 ! zone of skin @@ -176367,7 +176367,7 @@ synonym: "medial part" RELATED [BIRNLEX:2662] synonym: "medial subnucleus of solitary tract" EXACT HUMAN_PREFERRED [BIRNLEX:2662] synonym: "medial subnucleus of the solitary tract" EXACT [NeuroNames:745] synonym: "nucleus of the solitary tract" RELATED [BIRNLEX:2662] -synonym: "solitary nucleus, left, meidal subnucleus" EXACT DUBIOUS [HBA:9661] +synonym: "solitary nucleus, left, meidal subnucleus" EXACT OMO:0003002 [HBA:9661] synonym: "solitary nucleus, medial subnucleus" EXACT [HBA:9661, http://orcid.org/0000-0002-6601-2165] xref: BIRNLEX:2662 xref: HBA:9661