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Publishing Research With Knitr And R


Code4Lib 2016 Workshop


This workshop introduces the participants the fundementals of literate programming using the R Statistical Package, the Knitr Package and Shiny.

The contents are primary samples and other materials to be used in the workshop.

Tentative Schedule

9:00 - 9:30 Brief Introduction to R and R Studio

  • Introductions

  • History of R

  • Literate Programming and Open Science

  • Tour of R and R Studio

9:30 - 10:00 Knitr with Markdown and Latex

  • Make Default Documents

  • Explanation

    • Code Chunks
    • Chunk Labels
    • Chunk options

10:00 - 10:15 Break

10:15 - 11:00 More with Knitr

  • Code Chunk Options

  • Figures

  • Tables

  • CSS

11:00 - 11:30 Presentations with Knitr

  • Making Slides

  • Different Slide Modules

  • Layouts

11:30 - 12:00 Play Time / OverRun

12:00 - 13:30 Lunch

13:00 - 14:00 Introduction to Shiny

  • Basic Concepts

  • Limits of Shiny

  • Hello World Application

  • Adding A Figure

14:00 - 15:00 Exploring Shiny

  • Input Widgets

  • Reactive functions

  • Formatting/Layouts

  • CSS

15:00 - 15:15 Break

15:15 - 16:00 More Shiny

  • Shiny Presentations

  • Publishing to Shiny Apps

  • Additional Topics

16:00 - 16:30 Play Time/Advanced Topics