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Validate data #102

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will-moore opened this issue Aug 9, 2021 · 4 comments
Open

Validate data #102

will-moore opened this issue Aug 9, 2021 · 4 comments
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@will-moore
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See ome/ome_zarr_test_suite#11

Currently ome-zarr-py doesn't validate data, e.g. checking that essential metadata is present or that data is expected dimensions.

Maybe add this functionality to the info command by default (perhaps with a --no-validate option)?

@joshmoore
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cc: @glyg

@will-moore
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As discussed on ome/ngff#58 - assigning this to @glyg for the code-based validation of the zarr data that can't be covered by JSON schema validation. Thanks!

@dstansby
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Would be great to have an ome_zarr validate command 😄

@glyg
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glyg commented Apr 21, 2024

Hi @dstansby
Apologies for the stale issue. I do not have the bandwidth to look into that, and won't before several months. Integration of ome-zarr in our projects is in the pipe though so if you can wait that long I'll be happy to address it :).

I think a request to https://ome.github.io/ome-ngff-validator/ would do a lot of the work

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