Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[PRE REVIEW]: pyMechT: A Python package for mechanics of soft tissues #7295

Open
editorialbot opened this issue Sep 27, 2024 · 12 comments
Open
Assignees
Labels
pre-review Python TeX Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials

Comments

@editorialbot
Copy link
Collaborator

editorialbot commented Sep 27, 2024

Submitting author: @ankushaggarwal (Ankush Aggarwal)
Repository: https://github.com/ankushaggarwal/pymecht
Branch with paper.md (empty if default branch): paper
Version: v1.1.2
Editor: @Kevin-Mattheus-Moerman
Reviewers: Pending
Managing EiC: Kevin M. Moerman

Status

status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/9e6d337614f479fa681d57bff102ff71"><img src="https://joss.theoj.org/papers/9e6d337614f479fa681d57bff102ff71/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/9e6d337614f479fa681d57bff102ff71/status.svg)](https://joss.theoj.org/papers/9e6d337614f479fa681d57bff102ff71)

Author instructions

Thanks for submitting your paper to JOSS @ankushaggarwal. Currently, there isn't a JOSS editor assigned to your paper.

@ankushaggarwal if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

@editorialbot commands
@editorialbot editorialbot added pre-review Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials labels Sep 27, 2024
@editorialbot
Copy link
Collaborator Author

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf

@editorialbot
Copy link
Collaborator Author

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1016/j.cma.2022.115812 is OK
- 10.1016/j.jmbbm.2023.105657 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Heterogeneity and multi-scale modeling in vascular...

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None

@editorialbot
Copy link
Collaborator Author

Software report:

github.com/AlDanial/cloc v 1.90  T=0.05 s (1036.5 files/s, 207299.3 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
SVG                              6              5              5           3056
Python                          16            551            980           2294
Jupyter Notebook                 3              0           1447            203
reStructuredText                12             76             98            196
Markdown                         2             52              0            174
YAML                             4             19             44             86
TeX                              1              2              0             28
DOS Batch                        1              8              1             26
TOML                             1              4              8             17
make                             1              4              7              9
-------------------------------------------------------------------------------
SUM:                            47            721           2590           6089
-------------------------------------------------------------------------------

Commit count by author:

   209	Ankush Aggarwal
    23	r-williams-2
    18	Ross Williams
     3	rosnelclaire
     1	ankushaggarwal

@editorialbot
Copy link
Collaborator Author

Paper file info:

📄 Wordcount for paper.md is 1404

✅ The paper includes a Statement of need section

@editorialbot
Copy link
Collaborator Author

License info:

✅ License found: MIT License (Valid open source OSI approved license)

@editorialbot
Copy link
Collaborator Author

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

@editorialbot
Copy link
Collaborator Author

Five most similar historical JOSS papers:

pyomeca: An Open-Source Framework for Biomechanical Analysis
Submitting author: @romainmartinez
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @BKillen05, @mitkof6
Similarity score: 0.7558

biorbd: A C++, Python and MATLAB library to analyze and simulate the human body biomechanics
Submitting author: @pariterre
Handling editor: @trallard (Retired)
Reviewers: @trallard, @abhishektha
Similarity score: 0.7469

Tyssue: an epithelium simulation library
Submitting author: @glyg
Handling editor: @pdebuyl (Active)
Reviewers: @fcooper8472, @SergeDmi
Similarity score: 0.7402

GIBBON: The Geometry and Image-Based Bioengineering add-On
Submitting author: @Kevin-Mattheus-Moerman
Handling editor: @cMadan (Retired)
Reviewers: @siboles
Similarity score: 0.7367

BasicTools: a numerical simulation toolbox
Submitting author: @fbordeu
Handling editor: @diehlpk (Active)
Reviewers: @hvonwah, @sthavishtha
Similarity score: 0.7337

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

@Kevin-Mattheus-Moerman
Copy link
Member

@ankushaggarwal Dear author, thanks for this submission. I am the AEiC on this track and here to help process the initial steps. Before we proceed, please can you have a look at the following points:

  • Please spell out UK as United Kingdom in your affiliations.

@Kevin-Mattheus-Moerman
Copy link
Member

I'll assign myself as editor as soft tissue biomechanics is part of my expertise, and other editors in this domain are currently busy handling other submissions. So I will be the editor responsible for finding reviewers here and you can address me if you have any questions.

@Kevin-Mattheus-Moerman
Copy link
Member

@editorialbot assign me as editor

@editorialbot
Copy link
Collaborator Author

Assigned! @Kevin-Mattheus-Moerman is now the editor

@ankushaggarwal
Copy link

@ankushaggarwal Dear author, thanks for this submission. I am the AEiC on this track and here to help process the initial steps. Before we proceed, please can you have a look at the following points:

* [ ]  Please spell out UK as United Kingdom in your affiliations.

Sure, I have updated this.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
pre-review Python TeX Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials
Projects
None yet
Development

No branches or pull requests

3 participants